D WT_CYTO_ELU

826

91986

5.3

PREDICTED: DNA damage-binding protein 1-like isoform 6 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.13460.13460.2	4.2962	0.3732	1688.523	1688.0043	1	2352.2	82.1%	4	R.LEIYVVTAEGLRPVK.E	2 2 2 2
step05.14728.14728.2	3.0319	0.3723	1204.507	1204.5101	1	1301.8	83.3%	4	K.IAVMELFRPK.G	2 2 2 2
step04.12615.12615.2	2.4964	0.394	1220.494	1220.5095	1	383.3	83.3%	2	K.IAVM*ELFRPK.G	2 2 2 2
step03.14115.14115.2	2.2374	0.2072	1435.575	1435.6903	2	465.8	58.3%	1	K.GESKDLLFILTAK.Y	2 2 2 2
step04.13211.13211.2	3.8925	0.5658	1644.268	1644.8981	1	1512.8	83.3%	2	R.ALYYLQIHPQELR.Q	2 2 2 2
step05.11353.11353.2	3.5951	0.4448	1313.787	1313.5715	1	963.9	81.8%	2	K.KVTLGTQPTVLR.T	2 2 2 2
step05.13079.13079.2	4.4071	0.4507	2584.749	2585.8047	1	630.7	45.5%	4	R.SLSTTNVFACSDRPTVIYSSNHK.L	2 2 2 2
step05.13066.13066.3	4.7156	0.4288	2586.249	2585.8047	1	1211.3	39.8%	4	R.SLSTTNVFACSDRPTVIYSSNHK.L	3 3 3 3
step04.12808.12808.2	6.3572	0.5556	2062.651	2062.2993	1	2732.1	84.4%	2	R.KICYQEVSQCFGVLSSR.I	2 2 2 2
step02.10884.10886.3	7.2537	0.5983	2954.599	2954.1514	1	2720.0	38.8%	1	R.IEVQDTSGGTTALRPSASTQALSSSVSSSK.L	3 3 3 3
step04.13670.13670.2	3.8862	0.4032	1884.565	1885.1271	1	1314.2	75.0%	4	R.TECNHYNNIMALYLK.T	2 2 2 2
step03.14051.14051.2	4.6979	0.4069	1466.781	1465.7432	1	2073.9	87.5%	3	K.TKGDFILVGDLMR.S	2 2 2 2
step03.14138.14138.2	3.7741	0.5343	2180.762	2181.5403	1	319.5	41.7%	2	R.SVLLLAYKPMEGNFEEIAR.D	2 2 2 2
step03.14145.14145.3	3.6618	0.3604	2182.567	2181.5403	1	1468.3	43.1%	1	R.SVLLLAYKPMEGNFEEIAR.D	3 3 3 3
step04.11676.11676.1	1.9047	0.318	974.538	975.0849	1	232.6	66.7%	1	K.IEHSFWR.S	1 1 1
step03.16388.16388.3	7.2568	0.5576	2650.692	2650.9648	1	1803.3	46.7%	4	R.KTEPATGFIDGDLIESFLDISRPK.M	3 3 3
step03.16397.16397.2	5.4603	0.4878	2652.153	2650.9648	1	1175.7	54.3%	3	R.KTEPATGFIDGDLIESFLDISRPK.M	2 2 2
step02.17306.17306.2	4.3861	0.3848	2521.822	2522.7917	1	638.7	45.5%	1	K.TEPATGFIDGDLIESFLDISRPK.M	2 2 2
step02.11352.11352.2	5.3017	0.485	2042.784	2042.2834	1	1654.8	67.6%	3	K.MQEVVANLQYDDGSGMKR.E	2 2 2

Similarities: gi|310129363|ref|XP_0(19:0)
gi|148529014|ref|NP_0(19:0)
gi|310129365|ref|XP_0(14:5)

gi|24234747|ref|NP_00

390

43062

5.3

interleukin enhancer-binding factor 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.11585.11585.2	2.9568	0.4034	1732.612	1732.9556	1	781.9	73.3%	3	R.VKPAPDETSFSEALLK.R	2
*	step04.12676.12676.2	4.2481	0.5063	1889.523	1889.142	1	647.7	78.1%	2	R.VKPAPDETSFSEALLKR.N	2
*	step01.8916.8916.3	3.8931	0.3936	2099.225	2100.316	1	1374.4	35.5%	2	R.NQDLAPNSAEQASILSLVTK.I	3
*	step01.8907.8907.2	5.1628	0.6527	2099.569	2100.316	1	964.1	68.4%	2	R.NQDLAPNSAEQASILSLVTK.I	2
*	step03.15354.15354.3	3.9868	0.3118	2583.574	2583.9216	1	1158.4	34.1%	2	K.INNVIDNLIVAPGTFEVQIEEVR.Q	3
*	step03.15342.15342.2	4.0352	0.3444	2583.812	2583.9216	1	796.8	50.0%	2	K.INNVIDNLIVAPGTFEVQIEEVR.Q	2
*	step04.13811.13811.2	4.1875	0.2942	1769.77	1770.0873	1	1330.0	65.6%	2	K.GTMTTGHNVADLVVILK.I	2
*	step04.13643.13643.2	3.9364	0.406	1784.973	1786.0867	1	719.3	65.6%	1	K.GTM*TTGHNVADLVVILK.I	2
*	step01.11980.11980.2	2.6242	0.266	1410.368	1410.684	1	710.6	61.5%	1	K.ILPTLEAVAALGNK.V	2
*	step03.18653.18653.2	2.6899	0.3324	2094.57	2094.484	1	384.4	34.2%	1	K.ILPTLEAVAALGNKVVESLR.A	2
*	step03.11562.11562.2	3.0041	0.1764	1321.498	1321.5472	2	1001.0	85.0%	2	R.KLDPELHLDIK.V	2

gi|224586882|ref|NP_0

372

40090

9.8

DNA-binding protein A isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.9468.9470.3	4.4454	0.3912	1746.397	1745.9144	1	1988.8	53.6%	1	R.NDTKEDVFVHQTAIK.K	3 3 3 3
	step03.9455.9455.2	5.1334	0.403	1746.56	1745.9144	1	1193.0	75.0%	3	R.NDTKEDVFVHQTAIK.K	2 2 2 2
	step04.9909.9909.2	2.5944	0.2186	1874.921	1874.0874	1	485.6	50.0%	1	R.NDTKEDVFVHQTAIKK.N	2 2 2
	step01.7266.7266.2	4.8597	0.5331	1797.495	1796.8671	1	1378.8	71.9%	3	R.SVGDGETVEFDVVEGEK.G	2 2 2 2
	step01.5765.5765.2	3.7203	0.4508	1783.689	1783.8779	1	1106.1	63.9%	2	K.GAEAANVTGPDGVPVEGSR.Y	2 2
*	step03.10263.10263.3	5.2037	0.5622	2634.231	2633.9226	1	1555.7	39.6%	2	R.IQAGEIGEM*KDGVPEGAQLQGPVHR.N	3
	step02.6376.6376.3	5.2205	0.509	2678.932	2678.8103	1	1264.6	34.0%	2	R.PAPAVGEAEDKENQQATSGPNQPSVR.R	3 3

Similarities: gi|34098946|ref|NP_00(4:3)
gi|224586884|ref|NP_0(6:1)
gi|156415990|ref|NP_0(3:4)

gi|5902102|ref|NP_008

119

13282

11.6

small nuclear ribonucleoprotein Sm D1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.11436.11436.2	4.1668	0.4506	1555.907	1555.7612	1	862.6	79.2%	2	K.NREPVQLETLSIR.G	2
*	step01.14615.14615.2	2.3134	0.1381	2288.859	2288.664	1	327.1	44.7%	1	R.YFILPDSLPLDTLLVDVEPK.V	2

U	gi\|21327708\|ref\|NP_63	9	19	27.6%	391	45374	4.5	nucleosome assembly protein 1-like 1 [Homo sapiens]
U	gi\|4758756\|ref\|NP_004	9	19	27.6%	391	45374	4.5	nucleosome assembly protein 1-like 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.10586.10586.2	2.8666	0.3018	1338.433	1337.419	1	1133.2	77.8%	2	K.FYEEVHDLER.K	2 2
step04.13395.13395.2	3.6403	0.4473	1485.555	1485.751	1	1110.4	72.7%	1	R.KYAVLYQPLFDK.R	2
step06.14536.14536.2	4.3789	0.4265	1641.742	1641.9374	1	1698.6	91.7%	2	R.KYAVLYQPLFDKR.F	2
step06.14532.14532.3	4.0843	0.5051	1643.232	1641.9374	1	806.1	54.2%	2	R.KYAVLYQPLFDKR.F	3
step04.13256.13256.2	3.6543	0.4817	1514.622	1513.7644	1	988.8	72.7%	4	K.YAVLYQPLFDKR.F	2
step02.16970.16970.2	2.7394	0.4195	1337.336	1337.59	1	398.9	80.0%	4	K.GIPEFWLTVFK.N	2
step02.14870.14870.2	3.7272	0.3983	2096.601	2096.3474	1	660.8	50.0%	1	K.NVDLLSDMVQEHDEPILK.H	2
step03.16043.16043.3	5.7579	0.5486	3426.679	3425.7668	1	1028.6	36.6%	2	K.FSDAGQPMSFVLEFHFEPNEYFTNEVLTK.T	3
step01.9219.9219.3	4.5896	0.374	3093.598	3092.237	1	1354.5	34.6%	1	R.SEPDDSDPFSFDGPEIMGCTGCQIDWK.K	3

Similarities: gi|5174613|ref|NP_005(1:8)

U	gi\|212549553\|ref\|NP_0	18	32	27.5%	898	95808	8.8	interleukin enhancer-binding factor 3 isoform d [Homo sapiens]
U	gi\|24234750\|ref\|NP_03	18	32	27.6%	894	95339	8.8	interleukin enhancer-binding factor 3 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.13768.13768.3	4.6303	0.5172	2672.779	2672.8691	1	1165.6	42.0%	2	K.HSSVYPTQEELEAVQNMVSHTER.A	3 3
	step03.13775.13775.2	5.6631	0.5237	2673.047	2672.8691	1	1216.5	56.8%	2	K.HSSVYPTQEELEAVQNMVSHTER.A	2 2
	step04.16641.16641.3	4.8961	0.4116	3331.556	3330.771	1	837.9	29.2%	4	K.VADNLAIQLAAVTEDKYEILQSVDDAAIVIK.N	3 3
	step06.14749.14749.3	3.8384	0.3032	2103.141	2103.451	1	837.4	40.3%	2	K.NTKEPPLSLTIHLTSPVVR.E	3 3
	step06.14742.14742.2	5.5177	0.4669	2103.842	2103.451	1	1238.4	69.4%	2	K.NTKEPPLSLTIHLTSPVVR.E	2 2
	step01.7632.7632.2	3.9321	0.4023	1910.701	1911.1028	1	1165.8	64.7%	1	K.VLAGETLSVNDPPDVLDR.Q	2 2
2	step03.9332.9332.2	2.4229	0.3599	847.187	847.0315	3	758.3	91.7%	2	K.SCVIVIR.V	2 2 2
	step03.11121.11121.2	2.5641	0.3	926.294	926.0969	4	609.6	85.7%	2	R.VPTWGPLR.G	2 2
	step04.9192.9192.2	2.6986	0.3033	1603.088	1601.8135	2	415.3	46.7%	1	K.SIGTANRPMGAGEALR.R	2 2
	step02.9276.9276.2	2.6318	0.3769	1369.539	1369.4657	1	701.4	81.8%	2	R.EDITQSAQHALR.L	2 2
	step05.11413.11413.1	2.2203	0.2547	984.65	985.16437	3	323.8	68.8%	2	R.LAAFGQLHK.V	1 1
	step04.10503.10503.2	2.3148	0.2438	985.49	985.16437	1	872.3	81.2%	1	R.LAAFGQLHK.V	2 2
	step05.10211.10211.2	3.0956	0.2816	1303.533	1302.5471	2	547.9	70.0%	2	R.LNQLKPGLQYK.L	2 2
	step06.14816.14816.3	6.98	0.4169	3319.013	3318.7024	1	2216.9	35.5%	1	K.LVSQTGPVHAPIFTMSVEVDGNSFEASGPSKK.T	3 3
	step04.12201.12201.2	4.898	0.4516	1890.53	1891.0748	1	1959.2	78.1%	2	R.GLKYELISETGGSHDKR.F	2 2 2
	step04.12167.12167.3	3.5458	0.3071	1891.824	1891.0748	1	1063.7	48.4%	1	R.GLKYELISETGGSHDKR.F	3 3 3
	step01.7541.7541.2	3.6529	0.4347	1021.432	1021.1918	1	1489.7	88.9%	2	K.AYAALAALEK.L	2 2
	step03.8363.8363.3	4.4027	0.4599	3014.249	3013.9563	1	1218.3	28.8%	1	R.SGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQGK.Q	3

Similarities: gi|212549555|ref|NP_0(17:1)
gi|21361745|ref|NP_06(3:15)

gi|18104948|ref|NP_00

27.5%

160

18565

10.5

60S ribosomal protein L21 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13049.13049.1	2.0596	0.2543	1243.8	1244.4912	1	271.5	65.0%	2	K.HGVVPLATYMR.I	1
*	step05.13108.13108.2	3.5292	0.4327	1244.589	1244.4912	1	966.9	85.0%	4	K.HGVVPLATYMR.I	2
*	step04.11678.11678.2	5.1387	0.3695	1641.935	1641.8958	1	2212.2	89.3%	2	R.VYNVTQHAVGIVVNK.Q	2
*	step04.11718.11718.1	3.4912	0.3528	1641.971	1641.8958	1	684.1	57.1%	2	R.VYNVTQHAVGIVVNK.Q	1
*	step04.11690.11690.3	4.2741	0.4776	1642.754	1641.8958	1	1315.2	58.9%	1	R.VYNVTQHAVGIVVNK.Q	3
*	step02.15500.15500.2	4.9901	0.5199	2078.728	2079.3586	1	1165.6	58.8%	4	R.TNGKEPELLEPIPYEFMA.-	2
*	step02.2164.2164.2	4.0821	0.4124	2095.488	2095.358	1	955.5	55.9%	2	R.TNGKEPELLEPIPYEFM*A.-	2

U	gi\|145309309\|ref\|NP_0	65	164	27.3%	2570	292278	5.8	probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform 3 [Homo sapiens]
U	gi\|145309311\|ref\|NP_0	65	164	27.4%	2554	290461	5.8	probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.17967.17967.2	4.7054	0.3983	1601.686	1600.8354	1	1841.4	78.6%	5	K.GELEVLLEAAIDLSK.K	2
	step03.17351.17351.2	5.3152	0.511	1729.547	1729.0084	1	2758.2	83.3%	8	K.GELEVLLEAAIDLSKK.G	2
	step01.7092.7092.2	3.0398	0.3556	1219.353	1219.3687	1	723.3	85.0%	1	K.ILTDEAVSGWK.F	2
	step04.13844.13844.3	7.2029	0.52	3140.261	3140.4023	1	1491.2	39.4%	3	K.FHIYNGTRPCESVSSSVQLPEDELFAR.S	3
	step04.13878.13880.2	3.7594	0.4719	3140.537	3140.4023	1	382.8	34.6%	1	K.FHIYNGTRPCESVSSSVQLPEDELFAR.S	2
2	step02.15592.15592.2	2.4853	0.0853	1058.39	1058.2552	7	1011.6	81.2%	2	K.GWLVDLLNK.F	2 2
	step04.13596.13598.2	3.5959	0.4665	1518.506	1518.7012	1	1009.4	75.0%	1	K.FGTLNGFQILHDR.F	2 2
	step04.17980.17980.3	5.0067	0.4606	2955.041	2955.457	1	2209.2	43.5%	2	K.KYFLPIIEM*VPQFLENLTDEELKK.E	3
	step03.20576.20576.2	4.039	0.2319	2810.191	2811.2847	1	570.7	50.0%	2	K.YFLPIIEMVPQFLENLTDEELKK.E	2
	step03.18849.18849.2	4.2024	0.454	2827.846	2827.284	1	685.1	50.0%	4	K.YFLPIIEM*VPQFLENLTDEELKK.E	2
	step02.11914.11914.2	2.8037	0.2616	1463.789	1463.6824	1	497.8	62.5%	1	K.NEAKNDALSM*IIK.S	2 2
	step04.10066.10066.2	2.889	0.4417	1312.552	1312.4558	1	513.5	65.0%	4	K.VISSVSYYTHR.H	2 2
	step02.16750.16750.2	5.1501	0.4074	1929.291	1929.2759	1	2501.1	80.0%	1	R.MAEWIQQNNILSIVLR.D	2
	step03.9345.9345.2	3.1199	0.2027	1713.721	1714.9004	2	623.4	61.5%	2	R.DSLHQPQYVEKLEK.I	2
	step04.14750.14750.2	4.2783	0.5588	2505.923	2506.842	1	875.6	47.7%	2	K.ALTLQDLDNIWAAQAGKHEAIVK.N	2 2
	step02.17048.17048.2	5.0006	0.5181	2268.82	2269.4897	1	1898.2	73.5%	4	K.LAWDFSPEQLDHLFDCFK.A	2
	step06.17508.17508.3	4.5863	0.2995	3113.589	3114.6074	4	975.5	29.6%	2	K.VLNLLWNLAHSDDVPVDIMDLALSAHIK.I	3
	step06.17527.17527.2	4.4229	0.476	3114.287	3114.6074	1	1375.2	46.3%	2	K.VLNLLWNLAHSDDVPVDIMDLALSAHIK.I	2
	step04.17300.17300.2	4.7801	0.4731	3129.451	3130.6067	1	520.8	40.7%	3	K.VLNLLWNLAHSDDVPVDIM*DLALSAHIK.I	2
	step05.17608.17608.3	6.0447	0.4036	3130.141	3130.6067	1	2055.3	42.6%	5	K.VLNLLWNLAHSDDVPVDIM*DLALSAHIK.I	3
	step03.12040.12040.2	3.0626	0.2639	1285.118	1285.5166	1	948.5	75.0%	1	R.TNDKWVIPALK.Q	2 2
	step01.5776.5776.2	3.588	0.553	1316.936	1317.4308	1	1820.1	86.4%	2	R.VVIQSNDDIASR.A	2
	step03.15203.15203.2	5.201	0.5711	1716.836	1717.0026	1	2011.6	82.1%	4	R.AIDLLKEIYTNLGPR.L	2 2
	step02.11970.11970.2	5.5257	0.5191	2261.558	2260.3882	1	979.0	60.5%	2	K.ASYDTLCVLDGDKDSVNCAR.Q	2
	step05.12323.12323.2	2.3305	0.2274	858.206	858.0226	1	598.2	100.0%	2	K.HLSFVVR.F	2
	step02.14535.14535.2	2.6465	0.3225	1889.118	1888.1108	1	500.3	46.9%	2	K.IELFVGGELIDPADDRK.L	3 2
	step05.12293.12293.2	2.8317	0.2478	1027.449	1027.2859	2	903.5	87.5%	1	R.KLIGQLNLK.D	2 2
	step04.10660.10660.2	2.3045	0.2053	1142.617	1142.3737	1	580.6	72.2%	1	K.LIGQLNLKDK.S	2 2
	step02.17657.17657.2	2.932	0.2463	2410.002	2408.8035	1	384.5	37.5%	1	R.YISFLWQVADLGSSLNMPPLR.D	2
	step03.2403.2403.2	4.2896	0.413	1344.764	1344.649	1	1020.2	79.2%	11	K.SGGLPLVLSMLTR.N	2
	step02.15131.15131.2	2.8667	0.3413	1360.614	1360.6484	1	1169.7	70.8%	1	K.SGGLPLVLSM*LTR.N	2
	step05.14329.14329.2	3.9858	0.5401	1314.469	1313.5732	1	1380.6	86.4%	4	K.LLLTAIGYGHVR.A	2 2
	step05.13814.13814.2	2.6304	0.3969	1408.59	1408.5867	1	722.4	81.8%	2	R.AKHSGDYFTLLR.H	2
	step03.16001.16001.3	7.052	0.4411	3286.106	3285.6538	1	2984.6	39.8%	2	R.HLLNYAYNSNINVPNAEVLLNNEIDWLK.R	3
	step04.15764.15764.3	7.968	0.6038	3441.374	3441.8403	1	2568.6	41.1%	6	R.HLLNYAYNSNINVPNAEVLLNNEIDWLKR.I	3 2
	step03.13072.13072.2	3.4638	0.4367	2140.87	2141.368	1	800.1	52.6%	3	K.RTGETGIEETILEGHLGVTK.E	2
	step03.13090.13090.3	4.9575	0.4385	2141.233	2141.368	1	1506.9	40.8%	2	K.RTGETGIEETILEGHLGVTK.E	3
	step02.14006.14006.2	5.4316	0.5534	1986.26	1985.1816	1	2193.3	66.7%	2	R.TGETGIEETILEGHLGVTK.E	2
	step02.11844.11844.2	2.8411	0.4869	1294.571	1294.4786	1	460.1	80.0%	2	K.ELLAFQTSEKK.F	2 2
	step03.15665.15665.2	3.1023	0.4305	2531.081	2531.9302	1	898.0	47.6%	2	K.NAGATCYMNSVIQQLYMIPSIR.N	2 2
	step03.10780.10780.2	2.4025	0.1877	1593.507	1593.7664	1	582.1	66.7%	1	K.TEDRKEYNIGVLR.H	2 2
	step04.19494.19494.3	7.0329	0.5569	3487.218	3486.8313	1	2410.4	31.9%	2	R.LWGEPVNLREQHDALEFFNSLVDSLDEALK.A	3 3
	step02.18884.18884.2	5.641	0.5397	2420.91	2421.6013	1	2091.4	62.5%	5	R.EQHDALEFFNSLVDSLDEALK.A	2 2
	step03.18860.18860.3	5.1264	0.3595	2422.423	2421.6013	1	1666.8	41.2%	6	R.EQHDALEFFNSLVDSLDEALK.A	3 3
	step05.10163.10163.2	2.6081	0.4491	1025.526	1025.2504	1	980.4	94.4%	2	K.ALGHPAMLSK.V	2
	step03.14103.14104.2	4.9399	0.4582	1701.754	1701.8617	1	1400.7	84.6%	2	R.NHQNLLDSLEQYVK.G	2
	step02.10318.10318.2	3.5041	0.4308	1577.375	1577.6709	1	1320.2	73.1%	2	K.GDLLEGANAYHCEK.C	2 2
	step06.14642.14642.3	4.3793	0.4067	1220.651	1220.5724	1	1757.6	65.0%	2	K.KLPPVLAIQLK.R	3
	step04.13517.13517.1	2.266	0.2184	1091.622	1092.3994	2	290.1	66.7%	2	K.LPPVLAIQLK.R	1
	step04.13449.13449.2	2.6627	0.4338	1092.313	1092.3994	1	651.1	88.9%	2	K.LPPVLAIQLK.R	2
	step03.10850.10850.2	2.7187	0.0803	1187.415	1187.2454	1	810.4	85.7%	2	K.RFDYDWER.E	2 2
	step02.13703.13703.2	3.3628	0.4376	1236.146	1235.3284	1	1477.6	93.8%	2	K.FNDYFEFPR.E	2 2
	step01.7420.7420.2	3.4669	0.4371	1523.199	1523.733	1	807.3	76.9%	2	R.ELDMEPYTVAGVAK.L	2
	step01.6809.6809.3	3.9542	0.4263	3006.426	3007.0815	1	553.1	26.9%	1	K.LEGDNVNPESQLIQQSEQSESETAGSTK.Y	3
	step01.6810.6810.2	3.0068	0.3685	1463.783	1464.5808	1	758.5	86.4%	1	R.MDTIDQDDELIR.Y	2
	step06.14639.14639.2	3.969	0.4354	2540.109	2540.9666	1	305.1	31.0%	2	R.YISELAITTRPHQIIMPSAIER.S	2
	step06.14632.14632.3	6.243	0.5309	2541.51	2540.9666	1	2204.7	45.2%	2	R.YISELAITTRPHQIIMPSAIER.S	3
	step04.13235.13235.2	2.6452	0.4317	1199.376	1199.3823	1	554.2	77.8%	3	R.FLFTTGFHTK.K	2 2
	step03.16634.16634.2	4.5947	0.4337	1740.776	1740.9313	1	1963.7	71.4%	4	R.GSASDWYDALCILLR.H	2
	step02.17262.17262.3	4.7377	0.3589	1742.04	1740.9313	1	1480.0	48.2%	2	R.GSASDWYDALCILLR.H	3
	step03.15332.15332.2	4.8381	0.4893	2168.847	2169.5696	1	806.5	50.0%	2	K.LSVPATFMLVSLDEGPGPPIK.Y	2
	step03.15345.15345.3	4.5311	0.3443	2169.857	2169.5696	1	1563.6	40.0%	2	K.LSVPATFMLVSLDEGPGPPIK.Y	3
	step03.14100.14102.2	4.6545	0.5328	2184.82	2185.5688	1	560.0	50.0%	1	K.LSVPATFM*LVSLDEGPGPPIK.Y	2
	step03.15761.15761.2	4.9616	0.372	1918.741	1919.1283	1	3213.6	85.7%	1	R.KWTWAVEWLGDELER.R	2 2
	step02.16797.16797.2	5.2509	0.4471	1791.703	1790.9553	1	1842.2	80.8%	3	K.WTWAVEWLGDELER.R	2 2

Similarities: gi|74319833|ref|NP_00(22:43)

gi|270265835|ref|NP_0

27.3%

1782

199748

6.0

cullin-7 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.13732.13732.3	4.3457	0.4906	1748.749	1748.0183	1	1524.2	53.3%	1	R.VPLGPGLHAYPDELIR.Q	3 3
	step05.13720.13720.2	4.4702	0.5549	1748.794	1748.0183	1	998.8	63.3%	2	R.VPLGPGLHAYPDELIR.Q	2 2
	step04.7878.7878.2	2.2509	0.2628	1408.423	1408.5037	1	382.2	54.5%	1	R.VGHDGHPEYQIR.W	2 2
	step01.7760.7760.2	2.2714	0.1886	1280.369	1280.4275	1	509.9	85.0%	1	K.SVLEEMETDVK.S	2 2
	step04.15890.15890.3	4.0465	0.4146	2032.892	2032.4164	1	996.1	50.0%	1	R.VLDLLMHMLSSPDYQIR.W	3 3
	step04.15885.15885.2	5.6673	0.4947	2033.62	2032.4164	1	1899.4	65.6%	1	R.VLDLLMHMLSSPDYQIR.W	2 2
	step03.15117.15117.2	4.7919	0.1257	2049.064	2048.4158	1	1047.1	71.9%	3	R.VLDLLM*HMLSSPDYQIR.W	2 2
	step03.13312.13312.2	3.8408	0.537	2064.682	2064.4153	1	451.7	62.5%	1	R.VLDLLMHMLSSPDYQIR.W	2 2
*	step03.6238.6238.3	7.4469	0.6232	2745.448	2745.9153	1	2373.9	40.4%	2	R.MIQALSSHDAGEGQCGEEGKAGEGLGR.L	3
*	step03.5824.5824.3	5.4986	0.5045	2761.774	2761.9146	1	1472.7	42.3%	2	R.M*IQALSSHDAGEGQCGEEGKAGEGLGR.L	3
	step04.1302.1302.2	3.0498	0.132	2571.467	2572.0195	1	949.6	43.2%	1	R.GQLELEFSM*AMGTLISELVQAMR.W	2 2
	step03.13158.13158.2	5.1268	0.4915	2767.371	2768.0767	1	1778.2	53.8%	2	R.SPGSIFQPQLADVSPGLPAAQAQPSFR.R	2 2
	step01.8963.8964.2	5.261	0.4619	1988.681	1989.1703	1	2532.9	79.4%	2	K.ILLDLEQALSSEGTQENK.V	2 2
	step01.8967.8967.3	4.5596	0.4566	1988.889	1989.1703	1	1931.8	52.9%	2	K.ILLDLEQALSSEGTQENK.V	3 3
	step06.14430.14430.3	3.7559	0.2613	1209.113	1208.5216	1	1369.5	63.9%	1	K.VKPLLLQLQR.Q	3 3
	step05.12947.12947.1	2.028	0.3168	952.703	953.1638	3	226.1	64.3%	2	R.TLHLTVLR.I	1 1
	step03.17399.17399.3	3.5927	0.4212	2955.606	2956.3953	1	818.6	31.2%	1	K.QLVDFPEALLLPWHEAVDACMACLR.S	3 3
	step05.16763.16763.2	3.9155	0.4504	2215.027	2215.4966	1	583.4	55.9%	2	R.SPNTDREVLQELIFFLHR.L	2 2
	step06.16255.16255.3	5.9792	0.5118	2216.36	2215.4966	1	1795.0	48.5%	4	R.SPNTDREVLQELIFFLHR.L	3 3
	step04.16590.16590.2	4.0471	0.5114	1544.749	1544.8217	1	1022.4	81.8%	2	R.EVLQELIFFLHR.L	2 2
	step01.7733.7733.2	3.6336	0.3408	1319.349	1319.4915	1	1418.3	77.3%	2	R.DYAVVLNQLGAR.D	2 2
	step05.13328.13328.2	2.8685	0.4162	1407.693	1407.6434	1	1448.6	86.4%	2	K.HLGKLELAQELR.D	2 2
	step04.17558.17558.2	4.9525	0.4221	2380.834	2381.7744	1	835.6	45.0%	2	K.LITNILGGCIQMVLGQIEDHR.R	2 2
	step04.17114.17114.2	4.0758	0.4598	2396.979	2397.774	1	572.6	57.5%	4	K.LITNILGGCIQM*VLGQIEDHR.R	2 2
	step02.7218.7218.2	3.1724	0.2863	1642.369	1642.7827	1	1239.8	73.1%	1	R.YLCQGSSVEVKEDK.C	2 2
	step05.13534.13534.2	5.3711	0.6282	2210.571	2211.402	1	1316.4	58.3%	3	K.TYWESNGSAGSHYITLHMR.R	2 2
	step02.12387.12387.3	3.9974	0.3776	2804.024	2805.0657	1	1867.6	37.5%	1	R.VVVCGGDSTSSLHTELNSVNVMPSASR.V	3 3
	step05.12080.12080.2	2.4292	0.2879	913.378	913.0566	1	962.7	92.9%	2	R.SLLHLSSR.L	2 2
	step06.13678.13678.2	3.0135	0.263	2432.502	2433.8276	1	297.5	33.3%	1	R.LTHLLVHVEPCEAPPPVVATPR.P	2 2
	step03.9533.9533.2	2.6102	0.3912	1160.524	1160.2214	1	827.2	83.3%	2	R.SHDWSSLATR.G	2 2
	step03.13738.13738.2	6.3624	0.4665	2300.568	2299.4775	1	2686.2	75.0%	1	R.YCEHFNILQNSSSELFGPR.A	2 2
	step03.14477.14477.2	3.941	0.3967	1731.811	1732.0537	1	2770.6	78.1%	5	R.AAFLLALQNGCAGALLK.L	2 2
	step05.9974.9974.2	2.5774	0.3992	1058.478	1058.2568	1	698.4	75.0%	2	K.KIQVGLGASGK.E	2 2
	step06.14604.14604.2	4.1173	0.4751	1776.646	1775.9852	1	825.7	75.0%	4	R.HSWPVASICHTLNPR.T	2 2
	step06.14329.14329.3	3.5828	0.4676	1776.807	1775.9852	1	892.2	46.4%	2	R.HSWPVASICHTLNPR.T	3 3
	step04.12296.12296.2	3.9912	0.5458	1816.802	1817.079	1	1039.3	62.5%	2	R.GPLDLHEQKDIPGGVLK.I	2 2
	step06.14621.14621.2	3.3262	0.345	1271.644	1271.5312	1	441.9	77.8%	2	R.RNLLNCLIVR.I	2 2
	step02.14433.14433.2	3.0896	0.3052	1115.348	1115.345	1	947.4	87.5%	2	R.NLLNCLIVR.I	2 2
	step04.17966.17966.3	5.0728	0.3621	2532.256	2532.8298	1	1560.9	40.5%	6	K.AHGDEGLHIDQLVCLVLEAWQK.G	3 3
	step04.16893.16893.2	5.6707	0.5674	2020.035	2019.2728	1	1889.8	66.7%	7	K.GSACSSTDVLSCILHLLGK.G	2 2

Similarities: gi|41872646|ref|NP_05(38:2)

U	gi\|148746199\|ref\|NP_0	6	9	27.3%	128	14632	10.8	60S ribosomal protein L31 isoform 2 [Homo sapiens]
U	gi\|4506633\|ref\|NP_000	6	9	28.0%	125	14463	10.5	60S ribosomal protein L31 isoform 1 [Homo sapiens]
U	gi\|153252132\|ref\|NP_0	6	9	28.9%	121	13995	10.8	60S ribosomal protein L31 isoform 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.14435.14435.2	2.4477	0.1003	1210.156	1210.4578	3	332.2	72.2%	1	K.RAPRALKEIR.K	2
step04.14482.14482.3	5.2596	0.4331	2959.063	2959.299	1	1793.2	39.6%	1	R.KRNEDEDSPNKLYTLVTYVPVTTFK.I	3
step04.14514.14514.2	4.7701	0.4944	2959.317	2959.299	1	776.9	47.9%	2	R.KRNEDEDSPNKLYTLVTYVPVTTFK.I	2
step03.14236.14236.3	5.6596	0.4861	2831.321	2831.1262	1	1755.5	40.2%	1	K.RNEDEDSPNKLYTLVTYVPVTTFK.I	3
step02.15288.15288.2	4.7178	0.5258	2674.941	2674.94	1	1196.5	52.3%	2	R.NEDEDSPNKLYTLVTYVPVTTFK.I	2
step01.12251.12251.2	2.9981	0.4044	1645.746	1645.9626	1	626.5	53.8%	2	K.LYTLVTYVPVTTFK.I	2

gi|10835067|ref|NP_00

27.2%

408

46837

7.1

lupus La protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14372.14372.2	6.298	0.5638	2072.861	2073.289	1	3052.8	83.3%	2	K.ICHQIEYYFGDFNLPR.D	2
*	step04.14368.14368.3	4.5671	0.4966	2072.935	2073.289	1	1890.0	56.7%	2	K.ICHQIEYYFGDFNLPR.D	3
*	step01.10350.10350.2	3.8469	0.551	1550.387	1550.7782	1	1045.9	76.9%	1	R.LTTDFNVIVEALSK.S	2
*	step03.5978.5978.2	5.1555	0.5518	1610.842	1609.8242	1	1560.3	80.8%	2	K.SKAELMEISEDKTK.I	2
*	step05.10640.10640.2	3.3434	0.3731	2203.875	2203.4377	1	463.1	50.0%	2	R.RSPSKPLPEVTDEYKNDVK.N	2
*	step03.16052.16052.3	5.1601	0.4756	3133.342	3134.509	1	866.2	35.6%	2	K.GFPTDATLDDIKEWLEDKGQVLNIQMR.R	3
*	step03.15659.15659.3	5.1862	0.5222	3150.715	3150.5085	1	718.1	33.7%	2	K.GFPTDATLDDIKEWLEDKGQVLNIQM*R.R	3
*	step03.14591.14591.2	3.1337	0.3396	1383.882	1383.657	1	1412.1	90.0%	2	K.YKETDLLILFK.D	2
*	step04.12822.12822.1	2.025	0.1445	1237.956	1237.3627	11	285.5	50.0%	1	K.QKLEEDAEM*K.S	1

U	gi\|224591430\|ref\|NP_0	9	18	27.2%	379	43634	9.6	cell growth-regulating nucleolar protein [Homo sapiens]
U	gi\|8923398\|ref\|NP_060	9	18	27.2%	379	43634	9.6	cell growth-regulating nucleolar protein [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.13680.13680.2	3.5521	0.3829	1886.783	1887.1293	1	962.4	73.3%	1	K.VRELLEQISAFDNVPR.K	2
step01.8829.8829.2	2.9393	0.2325	1631.58	1631.8113	1	1186.3	73.1%	2	R.ELLEQISAFDNVPR.K	2
step03.16928.16928.3	6.4392	0.521	2857.884	2858.0686	1	1940.7	43.8%	2	K.VHNESILDQVWNIFSEASNSEPVNK.E	3
step03.16941.16941.2	6.2372	0.5989	2858.999	2858.0686	1	1674.7	50.0%	4	K.VHNESILDQVWNIFSEASNSEPVNK.E	2
step03.4241.4241.3	5.0348	0.3392	2528.748	2528.675	1	2076.5	44.8%	2	R.KKGQEADLEAGGEEVPEANGSAGKR.S	3
step03.5103.5103.3	5.0772	0.4832	2177.522	2177.3342	1	1322.4	47.4%	2	K.MKLPEHPEGGEPEDDEAPAK.G	3
step03.5375.5375.3	6.1777	0.3617	2363.603	2362.5588	1	1147.3	39.3%	2	K.MKLPEHPEGGEPEDDEAPAKGK.F	3
step05.11996.11996.2	2.5213	0.2234	1860.348	1861.0504	20	195.9	50.0%	2	K.KVLAQYYTVTDEHHR.S	2
step03.10449.10449.2	2.8382	0.3397	1732.549	1732.8774	1	994.9	69.2%	1	K.VLAQYYTVTDEHHR.S	2

gi|4503519|ref|NP_003

27.2%

357

37564

5.4

eukaryotic translation initiation factor 3 subunit F [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14666.14666.2	3.5995	0.299	1712.746	1712.9707	1	963.6	71.4%	1	R.LHPVILASIVDSYER.R	2
*	step02.13858.13858.3	6.5215	0.4471	3208.503	3208.409	1	1783.4	38.0%	2	K.HSVEVTNCFSVPHNESEDEVAVDMEFAK.N	3
*	step03.11279.11279.2	3.062	0.4792	1963.394	1963.141	1	504.8	61.8%	4	R.EAPNPIHLTVDTSLQNGR.M	2
*	step01.7366.7366.2	3.2958	0.4706	1658.292	1658.8384	1	492.0	46.9%	1	R.VIGLSSDLQQVGGASAR.I	2
*	step02.19565.19565.2	6.0481	0.6444	2051.639	2051.2832	1	2024.6	72.2%	10	R.IQDALSTVLQYAEDVLSGK.V	2
*	step02.19581.19581.3	5.9883	0.629	2051.869	2051.2832	1	1611.0	51.4%	2	R.IQDALSTVLQYAEDVLSGK.V	3

gi|41872646|ref|NP_05

27.1%

1698

191159

5.9

cullin-7 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.13732.13732.3	4.3457	0.4906	1748.749	1748.0183	1	1524.2	53.3%	1	R.VPLGPGLHAYPDELIR.Q	3 3
step05.13720.13720.2	4.4702	0.5549	1748.794	1748.0183	1	998.8	63.3%	2	R.VPLGPGLHAYPDELIR.Q	2 2
step04.7878.7878.2	2.2509	0.2628	1408.423	1408.5037	1	382.2	54.5%	1	R.VGHDGHPEYQIR.W	2 2
step01.7760.7760.2	2.2714	0.1886	1280.369	1280.4275	1	509.9	85.0%	1	K.SVLEEMETDVK.S	2 2
step04.15890.15890.3	4.0465	0.4146	2032.892	2032.4164	1	996.1	50.0%	1	R.VLDLLMHMLSSPDYQIR.W	3 3
step04.15885.15885.2	5.6673	0.4947	2033.62	2032.4164	1	1899.4	65.6%	1	R.VLDLLMHMLSSPDYQIR.W	2 2
step03.15117.15117.2	4.7919	0.1257	2049.064	2048.4158	1	1047.1	71.9%	3	R.VLDLLM*HMLSSPDYQIR.W	2 2
step03.13312.13312.2	3.8408	0.537	2064.682	2064.4153	1	451.7	62.5%	1	R.VLDLLMHMLSSPDYQIR.W	2 2
step04.1302.1302.2	3.0498	0.132	2571.467	2572.0195	1	949.6	43.2%	1	R.GQLELEFSM*AMGTLISELVQAMR.W	2 2
step03.13158.13158.2	5.1268	0.4915	2767.371	2768.0767	1	1778.2	53.8%	2	R.SPGSIFQPQLADVSPGLPAAQAQPSFR.R	2 2
step01.8963.8964.2	5.261	0.4619	1988.681	1989.1703	1	2532.9	79.4%	2	K.ILLDLEQALSSEGTQENK.V	2 2
step01.8967.8967.3	4.5596	0.4566	1988.889	1989.1703	1	1931.8	52.9%	2	K.ILLDLEQALSSEGTQENK.V	3 3
step06.14430.14430.3	3.7559	0.2613	1209.113	1208.5216	1	1369.5	63.9%	1	K.VKPLLLQLQR.Q	3 3
step05.12947.12947.1	2.028	0.3168	952.703	953.1638	3	226.1	64.3%	2	R.TLHLTVLR.I	1 1
step03.17399.17399.3	3.5927	0.4212	2955.606	2956.3953	1	818.6	31.2%	1	K.QLVDFPEALLLPWHEAVDACMACLR.S	3 3
step05.16763.16763.2	3.9155	0.4504	2215.027	2215.4966	1	583.4	55.9%	2	R.SPNTDREVLQELIFFLHR.L	2 2
step06.16255.16255.3	5.9792	0.5118	2216.36	2215.4966	1	1795.0	48.5%	4	R.SPNTDREVLQELIFFLHR.L	3 3
step04.16590.16590.2	4.0471	0.5114	1544.749	1544.8217	1	1022.4	81.8%	2	R.EVLQELIFFLHR.L	2 2
step01.7733.7733.2	3.6336	0.3408	1319.349	1319.4915	1	1418.3	77.3%	2	R.DYAVVLNQLGAR.D	2 2
step05.13328.13328.2	2.8685	0.4162	1407.693	1407.6434	1	1448.6	86.4%	2	K.HLGKLELAQELR.D	2 2
step04.17558.17558.2	4.9525	0.4221	2380.834	2381.7744	1	835.6	45.0%	2	K.LITNILGGCIQMVLGQIEDHR.R	2 2
step04.17114.17114.2	4.0758	0.4598	2396.979	2397.774	1	572.6	57.5%	4	K.LITNILGGCIQM*VLGQIEDHR.R	2 2
step02.7218.7218.2	3.1724	0.2863	1642.369	1642.7827	1	1239.8	73.1%	1	R.YLCQGSSVEVKEDK.C	2 2
step05.13534.13534.2	5.3711	0.6282	2210.571	2211.402	1	1316.4	58.3%	3	K.TYWESNGSAGSHYITLHMR.R	2 2
step02.12387.12387.3	3.9974	0.3776	2804.024	2805.0657	1	1867.6	37.5%	1	R.VVVCGGDSTSSLHTELNSVNVMPSASR.V	3 3
step05.12080.12080.2	2.4292	0.2879	913.378	913.0566	1	962.7	92.9%	2	R.SLLHLSSR.L	2 2
step06.13678.13678.2	3.0135	0.263	2432.502	2433.8276	1	297.5	33.3%	1	R.LTHLLVHVEPCEAPPPVVATPR.P	2 2
step03.9533.9533.2	2.6102	0.3912	1160.524	1160.2214	1	827.2	83.3%	2	R.SHDWSSLATR.G	2 2
step03.13738.13738.2	6.3624	0.4665	2300.568	2299.4775	1	2686.2	75.0%	1	R.YCEHFNILQNSSSELFGPR.A	2 2
step03.14477.14477.2	3.941	0.3967	1731.811	1732.0537	1	2770.6	78.1%	5	R.AAFLLALQNGCAGALLK.L	2 2
step05.9974.9974.2	2.5774	0.3992	1058.478	1058.2568	1	698.4	75.0%	2	K.KIQVGLGASGK.E	2 2
step06.14604.14604.2	4.1173	0.4751	1776.646	1775.9852	1	825.7	75.0%	4	R.HSWPVASICHTLNPR.T	2 2
step06.14329.14329.3	3.5828	0.4676	1776.807	1775.9852	1	892.2	46.4%	2	R.HSWPVASICHTLNPR.T	3 3
step04.12296.12296.2	3.9912	0.5458	1816.802	1817.079	1	1039.3	62.5%	2	R.GPLDLHEQKDIPGGVLK.I	2 2
step06.14621.14621.2	3.3262	0.345	1271.644	1271.5312	1	441.9	77.8%	2	R.RNLLNCLIVR.I	2 2
step02.14433.14433.2	3.0896	0.3052	1115.348	1115.345	1	947.4	87.5%	2	R.NLLNCLIVR.I	2 2
step04.17966.17966.3	5.0728	0.3621	2532.256	2532.8298	1	1560.9	40.5%	6	K.AHGDEGLHIDQLVCLVLEAWQK.G	3 3
step04.16893.16893.2	5.6707	0.5674	2020.035	2019.2728	1	1889.8	66.7%	7	K.GSACSSTDVLSCILHLLGK.G	2 2

Similarities: gi|270265835|ref|NP_0(38:0)

U	gi\|33239445\|ref\|NP_00	20	42	27.1%	814	92482	5.0	eukaryotic translation initiation factor 3 subunit B [Homo sapiens]
U	gi\|83367072\|ref\|NP_00	20	42	27.1%	814	92482	5.0	eukaryotic translation initiation factor 3 subunit B [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.13642.13642.2	4.3483	0.4902	1951.164	1952.1981	1	2750.1	76.5%	5	K.GYIFLEYASPAHAVDAVK.N	2
step02.14109.14109.2	5.8881	0.5208	2037.213	2036.2303	1	1384.8	71.9%	2	R.TSIFWNDVKDPVSIEER.A	2
step02.14126.14126.3	5.0587	0.4643	2037.565	2036.2303	1	2266.2	57.8%	2	R.TSIFWNDVKDPVSIEER.A	3
step04.10314.10314.2	3.2805	0.3114	1194.56	1194.3241	1	994.8	77.8%	2	K.GTYLATFHQR.G	2
step03.12580.12580.2	4.4129	0.4912	1920.603	1921.0961	1	1516.0	63.3%	1	R.FSHQGVQLIDFSPCER.Y	2
step03.17924.17924.3	6.7788	0.595	3233.215	3232.6943	1	1203.5	35.2%	5	R.YLVTFSPLMDTQDDPQAIIIWDILTGHK.K	3
step03.17373.17373.3	4.3324	0.4316	3248.28	3248.6936	1	586.2	29.6%	2	R.YLVTFSPLM*DTQDDPQAIIIWDILTGHK.K	3
step03.17434.17434.2	2.9745	0.4441	3248.306	3248.6936	1	180.3	27.8%	1	R.YLVTFSPLM*DTQDDPQAIIIWDILTGHK.K	2
step06.16920.16920.3	3.5583	0.3056	3360.055	3360.8672	4	422.4	23.2%	2	R.YLVTFSPLMDTQDDPQAIIIWDILTGHKK.R	3
step06.14482.14482.2	3.8769	0.4388	1703.51	1703.8744	1	1408.0	76.9%	4	R.GFHCESSAHWPIFK.W	2
step06.14500.14500.3	3.7253	0.3275	1704.463	1703.8744	1	1011.1	48.1%	2	R.GFHCESSAHWPIFK.W	3
step02.15096.15096.2	4.127	0.5428	2257.806	2257.6538	1	703.3	47.4%	2	R.MTLDTLSIYETPSMGLLDKK.S	2
step02.16517.16518.2	4.5212	0.4877	2719.036	2719.0024	1	752.4	47.8%	2	K.DFSWSPGGNIIAFWVPEDKDIPAR.V	2
step01.7817.7817.2	3.1363	0.3009	1109.304	1109.2509	1	716.5	81.2%	2	R.NLFNVVDCK.L	2
step01.12443.12443.2	2.221	0.299	1468.229	1468.6389	5	241.0	45.8%	1	K.GTQGVVTNFEIFR.M	2
step04.9789.9789.2	3.4805	0.4329	1097.417	1097.2516	1	1317.9	94.4%	2	K.FAVLHGEAPR.I	2
step04.12105.12105.2	2.4345	0.2562	1080.076	1080.261	1	1014.3	87.5%	1	R.ISVSFYHVK.N	2
step05.13740.13740.2	3.2007	0.3793	1479.5	1479.6633	1	1066.6	72.7%	2	R.YVVTSVSWWSHK.V	2
step02.15298.15298.2	3.6131	0.4935	1656.627	1656.8243	1	1368.0	70.8%	1	K.VDNAYWLWTFQGR.L	2
step03.12294.12294.2	2.4664	0.3981	1023.163	1023.20605	1	781.0	91.7%	1	R.FCQLLWR.P	2

gi|88758578|ref|NP_00

27.0%

226

24621

9.0

cyclin-L2 isoform B [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.16095.16095.2	5.4625	0.4834	2333.999	2333.7031	1	1147.0	55.3%	2	R.LYSGVLITLENCLLPDDKLR.F	2 2
step02.16521.16521.2	4.8566	0.2797	1613.655	1612.9324	1	2096.1	78.6%	2	R.VVGCELIQAAGILLR.L	2 2
step06.13895.13895.2	3.3811	0.4246	1269.568	1269.4805	1	1108.9	83.3%	2	R.IRDVINVFHR.L	2 2
step06.14610.14610.2	3.596	0.2797	1885.041	1884.2516	1	792.8	60.0%	4	K.KKPVPLLLDQDYVNLK.N	2 2

Similarities: gi|88758580|ref|NP_11(4:0)

gi|5453898|ref|NP_006

27.0%

163

18243

8.8

peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13392.13392.3	5.5345	0.503	2788.546	2787.9402	1	693.5	30.2%	2	R.VYYFNHITNASQWERPSGNSSSGGK.N	3
*	step03.13827.13827.2	4.2257	0.4661	2030.982	2031.3219	1	2709.3	75.0%	1	R.TGEMSGPVFTDSGIHIILR.T	2

U	gi\|10800140\|ref\|NP_06	5	8	27.0%	126	13950	10.3	histone H2B type 1-B [Homo sapiens]
U	gi\|4504277\|ref\|NP_003	5	8	27.0%	126	13920	10.3	histone H2B type 2-E [Homo sapiens]
U	gi\|28173554\|ref\|NP_77	5	8	27.0%	126	13908	10.3	histone H2B type 3-B [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.10774.10774.2	2.5795	0.3577	1280.561	1280.4504	1	505.8	77.8%	1	R.KESYSIYVYK.V	2
step02.16359.16359.2	4.1827	0.5462	1744.559	1745.0166	1	2276.9	78.6%	2	K.AMGIMNSFVNDIFER.I	2 2 2
step02.15192.15192.2	3.8368	0.1003	1760.532	1761.016	1	1447.9	67.9%	2	K.AMGIM*NSFVNDIFER.I	2 2 2
step02.14582.14582.2	4.867	0.557	1777.575	1777.0154	1	1741.0	75.0%	2	K.AMGIMNSFVNDIFER.I	2 2 2
step02.12620.12620.2	2.4971	0.149	955.528	954.1885	1	597.0	87.5%	1	R.LLLPGELAK.H	2 2 2

Similarities: gi|10800138|ref|NP_06(4:1)
gi|4504257|ref|NP_003(3:2)
gi|24586679|ref|NP_73(1:4)

U	gi\|10800138\|ref\|NP_06	5	9	27.0%	126	13936	10.3	histone H2B type 1-D [Homo sapiens]
U	gi\|66912162\|ref\|NP_00	5	9	27.0%	126	13920	10.3	histone H2B type 2-F isoform a [Homo sapiens]
U	gi\|4504265\|ref\|NP_003	5	9	27.0%	126	13906	10.3	histone H2B type 1-C/E/F/G/I [Homo sapiens]
U	gi\|238624110\|ref\|NP_0	5	9	25.4%	134	14841	10.3	histone H2B type 2-F isoform b [Homo sapiens]
U	gi\|21396484\|ref\|NP_00	5	9	27.0%	126	13906	10.3	histone H2B type 1-C/E/F/G/I [Homo sapiens]
U	gi\|21166389\|ref\|NP_00	5	9	27.0%	126	13906	10.3	histone H2B type 1-C/E/F/G/I [Homo sapiens]
U	gi\|20336752\|ref\|NP_61	5	9	27.0%	126	13936	10.3	histone H2B type 1-D [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.10002.10002.2	2.6205	0.4202	1266.874	1266.4238	1	565.3	83.3%	2	R.KESYSVYVYK.V	2 2
step02.16359.16359.2	4.1827	0.5462	1744.559	1745.0166	1	2276.9	78.6%	2	K.AMGIMNSFVNDIFER.I	2 2 2
step02.15192.15192.2	3.8368	0.1003	1760.532	1761.016	1	1447.9	67.9%	2	K.AMGIM*NSFVNDIFER.I	2 2 2
step02.14582.14582.2	4.867	0.557	1777.575	1777.0154	1	1741.0	75.0%	2	K.AMGIMNSFVNDIFER.I	2 2 2
step02.12620.12620.2	2.4971	0.149	955.528	954.1885	1	597.0	87.5%	1	R.LLLPGELAK.H	2 2 2

Similarities: gi|10800140|ref|NP_06(4:1)
gi|4504257|ref|NP_003(4:1)
gi|24586679|ref|NP_73(1:4)

U	gi\|14141161\|ref\|NP_00	18	53	26.9%	806	88980	5.8	heterogeneous nuclear ribonucleoprotein U isoform b [Homo sapiens]
U	gi\|74136883\|ref\|NP_11	18	53	26.3%	825	90585	6.0	heterogeneous nuclear ribonucleoprotein U isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.12366.12366.2	3.0121	0.1587	1446.058	1444.7418	1	687.5	77.3%	1	K.LKVSELKEELKK.R	2
step02.11661.11661.3	6.4998	0.6234	3128.614	3128.292	1	2101.3	35.5%	2	R.LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR.S	3
step03.54.54.2	3.0526	0.4232	1715.532	1715.9315	1	418.7	47.1%	19	K.SSGPTSLFAVTVAPPGAR.Q	2
step02.12592.12592.2	3.6081	0.4207	1698.559	1698.8131	1	1761.4	83.3%	2	R.GYFEYIEENKYSR.A	2
step02.7578.7578.2	2.6043	0.1562	997.469	997.0872	2	1006.4	85.7%	2	K.DIDIHEVR.I	2
step03.14489.14489.2	2.6908	0.1981	2725.208	2726.0317	1	870.5	54.8%	4	K.EKPYFPIPEEYTFIQNVPLEDR.V	2
step03.12814.12814.2	4.8271	0.469	1706.306	1706.0583	1	1614.2	76.7%	2	K.KDCEVVMMIGLPGAGK.T	2
step03.10414.10414.2	2.5877	0.3278	1737.328	1738.0573	1	505.2	63.3%	2	K.KDCEVVMMIGLPGAGK.T	2
step04.12605.12605.3	4.4024	0.5307	2189.157	2188.45	1	886.2	36.8%	2	K.HAAENPGKYNILGTNTIMDK.M	3
step04.11930.11930.3	4.2374	0.4304	2204.971	2204.4492	1	2434.4	47.4%	2	K.HAAENPGKYNILGTNTIM*DK.M	3
step01.6941.6941.2	2.7652	0.2948	1399.348	1399.5951	1	1013.5	81.8%	1	K.YNILGTNTIM*DK.M	2
step02.240.240.2	2.2908	0.1047	2553.394	2552.8672	19	125.0	25.4%	1	K.KQMADT#GKLNTLLQRAPQCLGK.F	2
step01.7314.7314.2	4.4479	0.412	1648.747	1648.802	1	2720.6	82.1%	2	R.NFILDQTNVSAAAQR.R	2
step06.14680.14680.2	3.5303	0.4553	1259.596	1258.5114	1	1202.8	88.9%	3	R.KMCLFAGFQR.K	2
step06.13849.13849.2	2.2416	0.4879	1274.397	1274.5107	1	418.8	83.3%	2	R.KM*CLFAGFQR.K	2
step02.13928.13928.2	3.285	0.5238	1129.977	1130.3385	1	1178.1	93.8%	3	K.MCLFAGFQR.K	2
step03.15563.15563.3	4.9604	0.4823	3465.044	3464.8345	1	1243.3	35.7%	1	K.M*KGNFTLPEVAECFDEITYVELQKEEAQK.L	3
step02.16641.16641.2	3.4618	0.3494	3189.364	3189.465	1	654.1	38.5%	2	K.GNFTLPEVAECFDEITYVELQKEEAQK.L	2

U	gi\|157694492\|ref\|NP_0	35	79	26.7%	1328	148854	9.3	myb-binding protein 1A isoform 2 [Homo sapiens]
U	gi\|157694494\|ref\|NP_0	35	79	26.7%	1332	149366	9.3	myb-binding protein 1A isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.16764.16764.2	3.1393	0.2752	2171.955	2172.3806	1	390.6	50.0%	1	R.EFLDFFWDIAKPEQETR.L	2
step03.20369.20369.3	3.762	0.1929	3406.633	3407.8855	1	1050.6	28.6%	1	R.PCYSLALAQLLQSFEDLPLCSILQQIQEK.Y	3
step04.12688.12688.3	3.8199	0.4153	2051.617	2051.2947	1	1093.3	43.8%	2	K.LLQALAQYQNHLQEQPR.K	3
step04.12690.12692.2	5.5031	0.4386	2051.685	2051.2947	1	2219.0	71.9%	2	K.LLQALAQYQNHLQEQPR.K	2
step06.14044.14044.2	5.8619	0.4512	2178.589	2179.4675	1	897.2	55.9%	2	K.LLQALAQYQNHLQEQPRK.A	2
step06.14030.14030.3	3.9597	0.4056	2179.607	2179.4675	1	889.0	41.2%	2	K.LLQALAQYQNHLQEQPRK.A	3
step03.13396.13396.2	4.2126	0.4553	1302.66	1302.5422	1	2018.4	90.9%	2	R.KALVDILSEVSK.A	2
step01.9446.9446.2	2.666	0.3495	1353.877	1354.6172	1	874.9	72.7%	3	K.ATLQEILPEVLK.A	2
step06.15228.15228.2	3.133	0.4702	1223.151	1223.5331	1	919.6	95.0%	2	R.KLPAIALDLLR.L	2
step06.15241.15241.3	3.5184	0.2638	1224.187	1223.5331	1	1144.9	57.5%	2	R.KLPAIALDLLR.L	3
step02.15623.15623.2	2.6672	0.361	1095.531	1095.3602	1	1100.3	88.9%	1	K.LPAIALDLLR.L	2
step05.10393.10393.2	2.85	0.4005	1217.019	1217.4423	1	933.1	77.8%	1	R.LALKEDKFPR.F	2
step03.15082.15082.2	3.9812	0.4624	1607.266	1606.8652	1	1273.6	86.4%	3	K.MQFWPASYLCFR.L	2
step02.14772.14772.2	3.0257	0.4528	1110.463	1110.4148	1	1166.5	90.0%	3	R.LLGAALPLLTK.E	2
step06.15871.15871.2	4.2145	0.4549	1719.385	1719.0219	1	615.6	75.0%	4	R.FLSPPALQGYVAWLR.A	2
step04.15467.15467.3	4.8098	0.4781	1719.465	1719.0219	1	3506.8	64.3%	2	R.FLSPPALQGYVAWLR.A	3
step06.15808.15808.2	3.9073	0.5252	1433.475	1433.6713	1	1807.4	90.0%	2	R.FCLFHSFFVTK.K	2
step03.18572.18572.2	5.041	0.4681	2105.343	2105.3757	1	1601.9	61.1%	8	R.EAVSSAFFSLLQTLSTQFK.Q	2
step02.18627.18627.3	4.3869	0.4097	2105.872	2105.3757	1	989.6	40.3%	2	R.EAVSSAFFSLLQTLSTQFK.Q	3
step06.14225.14225.2	4.4648	0.3577	1512.564	1511.7036	1	1321.1	75.0%	2	R.SVFGHICSHLTPR.A	2
step02.15990.15990.3	5.1892	0.4753	3402.263	3401.592	1	1286.4	33.6%	2	R.ALQLILDVLNPETSEDENDRVVVTDDSDER.R	3
step01.7478.7478.2	2.4909	0.1557	1218.296	1218.4489	9	371.2	60.0%	1	R.EQLMTVLQAGK.A	2
step03.15036.15036.2	3.752	0.4786	1228.464	1228.5033	1	1582.4	90.0%	3	R.VLDLVEVLVTK.Q	2
step04.324.324.3	4.3036	0.3733	2161.424	2161.5703	1	1823.1	47.2%	3	K.QPENALVLELLEPLLSIIR.R	3
step04.314.314.2	4.2306	0.5486	2161.866	2161.5703	1	659.7	52.8%	1	K.QPENALVLELLEPLLSIIR.R	2
step01.8817.8817.2	3.5993	0.5577	1318.357	1317.5122	1	1365.2	86.4%	3	R.VYSTALSSFLTK.R	2
step04.13572.13572.2	2.9091	0.3627	1473.578	1473.6986	1	990.7	70.8%	2	R.VYSTALSSFLTKR.N	2
step03.16910.16910.3	4.245	0.4209	1709.569	1710.0334	1	1808.7	53.6%	2	R.NSPLTVPMFLSLFSR.H	3
step03.16874.16874.2	3.8018	0.4212	1709.744	1710.0334	1	792.2	71.4%	3	R.NSPLTVPMFLSLFSR.H	2
step03.16022.16022.2	3.6389	0.4761	1725.754	1726.0328	1	823.1	75.0%	2	R.NSPLTVPM*FLSLFSR.H	2
step04.10240.10240.2	2.6378	0.2908	1111.439	1111.3131	1	816.8	81.2%	1	R.HQACLLLQK.T	2
step05.16678.16678.2	6.3326	0.5494	2068.099	2068.365	1	2697.2	82.4%	1	K.AQHQQALSSLELLNVLFR.T	2
step06.16558.16558.3	5.3516	0.5972	3137.495	3137.4944	1	954.0	32.8%	2	K.LTLDLTVLLGVLQGQQQSLQQGAHSTGSSR.L	3
step04.12741.12741.2	3.27	0.3956	1306.497	1305.5299	1	1036.5	88.9%	4	R.LHDLYWQAMK.T	2
step04.11213.11213.2	3.0731	0.409	1320.989	1321.5293	1	1266.6	88.9%	2	R.LHDLYWQAM*K.T	2

gi|124256496|ref|NP_0

26.7%

641

70375

6.0

heat shock 70 kDa protein 1-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step01.5757.5757.2	3.6889	0.2971	1229.229	1229.3252	1	1555.9	90.0%	1	K.VEIIANDQGNR.T	2 2 2 2 2 2 2
	step01.6542.6542.2	2.9268	0.5061	1488.301	1488.5806	1	775.6	79.2%	1	R.TTPSYVAFTDTER.L	2 2 2 2 2 2
	step01.9083.9083.3	3.7533	0.4582	1615.799	1615.8721	1	957.9	48.1%	1	K.AFYPEEISSMVLTK.L	3 3
	step01.9063.9063.2	4.021	0.4675	1616.374	1615.8721	1	1170.9	84.6%	2	K.AFYPEEISSMVLTK.L	2 2
	step01.8123.8124.2	4.5561	0.568	1631.77	1631.8715	1	1499.9	84.6%	3	K.AFYPEEISSM*VLTK.L	2 2
	step01.8312.8312.1	2.3475	0.3764	1197.694	1198.3973	1	220.2	59.1%	2	K.DAGVIAGLNVLR.I	1 1
	step01.8306.8306.2	4.3051	0.3167	1198.354	1198.3973	1	1892.4	95.5%	2	K.DAGVIAGLNVLR.I	2 2
	step01.8145.8145.2	5.2752	0.472	1661.552	1660.8926	1	1836.1	86.7%	4	R.IINEPTAAAIAYGLDK.G	2 2 2 2 2
	step02.6032.6032.2	3.7667	0.4341	1676.297	1676.6827	1	1076.7	73.3%	2	K.ATAGDTHLGGEDFDNR.L	2 2 2
*2	step03.11182.11182.1	2.6296	0.2523	1465.874	1466.7108	1	810.5	73.1%	2	K.AKIHDIVLVGGSTR.I	1 1
*2	step03.11132.11132.2	4.5292	0.4353	1466.757	1466.7108	1	2257.2	84.6%	4	K.AKIHDIVLVGGSTR.I	2 2
	step01.11579.11579.2	3.8813	0.4584	2305.313	2305.5935	1	996.4	45.5%	1	K.SINPDEAVAYGAAVQAAILMGDK.S	2 2
	step02.14477.14477.3	3.7711	0.3306	2787.758	2788.0183	1	1002.8	32.6%	2	K.QTQIFTTYSDNQPGVLIQVYEGER.A	3 3
	step03.6900.6900.2	2.3231	0.3762	1017.931	1018.14954	2	570.2	68.8%	2	K.ITITNDKGR.L	2 2 2 2 2
	step02.5450.5450.2	2.6043	0.1702	1004.194	1004.1196	1	809.1	92.9%	2	R.LSKEEIER.M	2 2
	step01.7804.7804.1	2.2078	0.3407	1287.506	1288.4545	1	307.2	65.0%	2	K.NALESYAFNMK.S	1 1
	step01.7766.7766.2	3.8548	0.4061	1289.438	1288.4545	1	1570.4	90.0%	4	K.NALESYAFNMK.S	2 2
	step01.6735.6735.2	2.254	0.3132	1304.385	1304.4539	1	1325.7	80.0%	1	K.NALESYAFNM*K.S	2 2

Similarities: gi|167466173|ref|NP_0(17:1)
gi|5729877|ref|NP_006(4:14)
gi|24234686|ref|NP_69(3:15)
gi|16507237|ref|NP_00(2:16)
gi|34419635|ref|NP_00(4:14)
gi|13676857|ref|NP_06(4:14)

gi|13129016|ref|NP_07

26.5%

102

11835

8.7

DET1- and DDB1-associated protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.12292.12292.2	2.4703	0.2516	1089.491	1089.2726	2	445.0	81.2%	2	R.RPSVYLPTR.E	2
*	step03.4278.4278.2	5.0918	0.5492	2056.64	2056.1802	1	2397.2	82.4%	2	K.KRDQEQVELEGESSAPPR.K	2

gi|153791384|ref|NP_0

26.2%

122

14606

9.4

60S ribosomal protein L22-like 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16269.16269.3	4.4545	0.4046	2811.704	2812.0415	1	859.8	30.4%	1	R.FNLDLTHPVEDGIFDSGNFEQFLR.E	3
	step04.12651.12651.2	2.4172	0.1345	1087.366	1087.2168	1	533.0	78.6%	2	K.NNLRDWLR.V	2 2

Similarities: gi|4506613|ref|NP_000(1:1)

gi|4503523|ref|NP_003

548

63973

6.0

eukaryotic translation initiation factor 3 subunit D [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14559.14559.3	3.7678	0.4212	2634.223	2634.944	1	1207.1	38.6%	1	K.FMTPVIQDNPSGWGPCAVPEQFR.D	3
*	step04.14584.14584.2	4.1092	0.3525	1460.739	1459.7817	1	1612.7	86.4%	6	R.NMLQFNLQILPK.S	2
*	step02.14355.14355.2	3.4571	0.3289	2012.608	2013.2805	1	1513.3	63.3%	2	R.SDWEVKEEMDFPQLMK.M	2
*	step03.10832.10832.2	4.2812	0.3665	1615.666	1615.8119	1	1970.1	84.6%	2	R.IFHTVTTTDDPVIR.K	2
*	step03.10844.10844.3	3.9863	0.2405	1616.685	1615.8119	1	1079.3	57.7%	1	R.IFHTVTTTDDPVIR.K	3
*	step04.10534.10534.2	3.4456	0.4333	1743.756	1743.9849	1	1417.8	78.6%	1	R.IFHTVTTTDDPVIRK.L	2
*	step02.16460.16460.2	6.1524	0.5642	2170.771	2171.454	1	2269.1	65.8%	2	K.TQGNVFATDAILATLMSCTR.S	2
*	step04.13168.13168.2	3.3716	0.4387	2311.959	2311.5566	1	910.6	50.0%	1	R.NLAMEATYINHNFSQQCLR.M	2
*	step02.14576.14576.3	3.8713	0.5973	2946.627	2947.184	1	406.4	35.4%	1	R.YNFPNPNPFVEDDMDKNEIASVAYR.Y	3
*	step06.13290.13290.2	3.0207	0.2491	1601.08	1600.9299	4	281.1	50.0%	1	K.YLILKDPNKQVIR.V	2

gi|66346681|ref|NP_00

402

44257

8.7

plasminogen activator inhibitor 1 RNA-binding protein isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step01.9532.9532.2	5.4439	0.4645	1944.625	1945.0713	1	3149.9	83.3%	2	R.FDQLFDDESDPFEVLK.A	2 2 2 2
step05.10153.10153.2	2.5832	0.3229	1350.572	1350.5886	1	601.0	70.8%	1	R.KNPLPPSVGVVDK.K	2 2 2 2
step06.12132.12132.2	2.8382	0.2229	1478.51	1478.7615	2	790.5	73.1%	4	R.KNPLPPSVGVVDKK.E	2 2 2 2
step04.9279.9279.2	2.4877	0.2648	1350.782	1350.5886	2	393.2	66.7%	2	K.NPLPPSVGVVDKK.E	2 2 2 2
step03.10845.10845.2	4.558	0.3775	2086.671	2087.1926	1	947.5	60.5%	2	R.GGSGSHNWGTVKDELTESPK.Y	2 2
step03.5842.5842.3	4.1952	0.1091	2194.291	2193.1936	1	676.6	45.1%	2	K.SKS#EEAHAEDSVMDHHFR.K	3 3 3 3
step03.6021.6021.3	4.7413	0.552	1898.439	1897.9631	1	1462.6	46.7%	2	K.SEEAHAEDSVMDHHFR.K	3 3 3 3
step03.13737.13737.2	5.1558	0.5759	2088.9	2089.2947	1	1996.8	77.8%	1	R.KPANDITSQLEINFGDLGR.P	2 2 2 2
step01.7577.7577.2	3.0696	0.3577	1761.129	1760.8364	1	1021.6	58.8%	2	K.SSASAPDVDDPEAFPALA.-	2 2 2 2

Similarities: gi|66346679|ref|NP_00(9:0)
gi|66346683|ref|NP_00(8:1)
gi|66346685|ref|NP_05(8:1)

gi|124494254|ref|NP_0

394

43787

6.6

proliferation-associated protein 2G4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.17853.17853.3	5.1844	0.5606	3237.536	3237.614	1	2000.1	31.7%	2	K.IDLGVHVDGFIANVAHTFVVDVAQGTQVTGR.K	3
*	step03.10031.10031.2	2.5933	0.3103	1183.327	1183.3362	1	1034.3	85.0%	1	K.AAHLCAEAALR.L	2
*	step04.9410.9410.2	4.2144	0.5112	1927.768	1928.1383	1	1004.3	68.8%	2	R.LVKPGNQNTQVTEAWNK.V	2
*	step06.14644.14644.3	5.2307	0.5225	2170.633	2170.4712	1	1072.3	48.6%	2	K.VAHSFNCTPIEGMLSHQLK.Q	3
*	step06.14634.14634.2	6.0331	0.5728	2170.898	2170.4712	1	1228.1	61.1%	2	K.VAHSFNCTPIEGMLSHQLK.Q	2
*	step03.13708.13708.2	3.3634	0.4169	1630.784	1630.8682	1	1703.3	91.7%	2	K.HELLQPFNVLYEK.E	2
*	step04.12010.12010.2	2.4853	0.19	1408.514	1408.715	1	430.1	63.6%	1	K.FTVLLMPNGPMR.I	2

U	gi\|301171345\|ref\|NP_0	9	25	26.1%	383	42954	5.1	tubulin alpha-8 chain isoform 2 [Homo sapiens]
U	gi\|9507215\|ref\|NP_061	9	25	22.3%	449	50094	5.1	tubulin alpha-8 chain isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.12845.12845.3	3.7356	0.2584	2416.054	2416.6343	1	1061.1	37.5%	1	R.QLFHPEQLITGKEDAANNYAR.G	3 3 3 3 3 3
step05.11574.11574.2	2.7886	0.2092	1875.627	1876.0665	1	289.6	64.3%	3	R.RNLDIERPTYTNLNR.L	2 2 2 2 2 2 2
step02.16820.16820.2	4.409	0.4792	1488.72	1488.7548	1	1720.2	73.1%	4	R.LISQIVSSITASLR.F	2 2 2 2
step02.15430.15430.2	3.3774	0.4155	2410.488	2410.6665	1	913.1	55.0%	1	R.FDGALNVDLTEFQTNLVPYPR.I	2 2 2 2 2 2 2
step01.11237.11237.2	3.2714	0.3173	1825.594	1826.0858	1	624.9	58.8%	8	K.VGINYQPPTVVPGGDLAK.V	2 2 2 2 2 2 2
step04.12386.12386.2	2.9708	0.3185	1381.589	1381.6246	1	334.7	75.0%	2	R.LDHKFDLMYAK.R	2 2 2 2 2 2 2
step04.12408.12408.1	2.8736	0.3116	1382.03	1381.6246	1	606.4	65.0%	3	R.LDHKFDLMYAK.R	1 1 1 1 1 1 1
step04.12402.12402.3	3.9649	0.4036	1382.125	1381.6246	1	1217.5	62.5%	2	R.LDHKFDLMYAK.R	3 3 3 3 3 3 3
step01.7438.7438.2	2.2063	0.2213	888.049	888.06573	2	781.6	100.0%	1	K.FDLMYAK.R	2 2 2 2 2 2 2 2

gi|5174613|ref|NP_005

375

42823

4.7

nucleosome assembly protein 1-like 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.11409.11409.2	3.5453	0.4764	1911.637	1912.1323	1	534.3	50.0%	2	R.LDNVPHTPSSYIETLPK.A	2
*	step03.11410.11410.3	4.4342	0.4828	1912.378	1912.1323	1	1177.3	45.3%	1	R.LDNVPHTPSSYIETLPK.A	3
	step02.10586.10586.2	2.8666	0.3018	1338.433	1337.419	1	1133.2	77.8%	2	K.FYEEVHDLER.K	2 2
*	step03.17084.17084.2	3.5512	0.5832	1414.514	1413.6466	1	411.4	80.0%	7	K.GIPEFWFTIFR.N	2
*	step01.10247.10247.2	4.5096	0.3902	2136.593	2136.4084	1	1375.7	61.8%	2	R.NVDMLSELVQEYDEPILK.H	2
*	step02.14690.14690.3	7.9808	0.5865	3117.205	3116.2783	1	2402.1	40.4%	2	K.SEPDKADPFSFEGPEIVDCDGCTIDWK.K	3
*	step02.16454.16454.2	2.3497	0.1588	1828.759	1829.0468	1	491.8	60.7%	1	K.QVPNESFFNFFNPLK.A	2

Similarities: gi|21327708|ref|NP_63(1:6)

U	gi\|11056056\|ref\|NP_06	2	2	26.1%	138	15173	10.3	28S ribosomal protein S12, mitochondrial precursor [Homo sapiens]
U	gi\|16950591\|ref\|NP_20	2	2	26.1%	138	15173	10.3	28S ribosomal protein S12, mitochondrial precursor [Homo sapiens]
U	gi\|16950589\|ref\|NP_20	2	2	26.1%	138	15173	10.3	28S ribosomal protein S12, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.8093.8093.2	2.2217	0.2538	1196.16	1196.3815	2	373.9	65.0%	1	K.LGPTEGRPQLK.G	2
	step03.13016.13016.3	3.6965	0.4634	2777.242	2777.0786	1	362.5	30.2%	1	R.EAVCFIPGEGHTLQEHQIVLVEGGR.T	3

U	gi\|4501885\|ref\|NP_001	8	22	25.9%	375	41737	5.5	actin, cytoplasmic 1 [Homo sapiens]
U	gi\|4501887\|ref\|NP_001	8	22	25.9%	375	41793	5.5	actin, cytoplasmic 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.13756.13756.2	3.0851	0.3071	1199.462	1199.4302	2	621.9	75.0%	2	R.AVFPSIVGRPR.H	2 2 2 2 2
step04.9354.9354.2	2.4427	0.2771	1172.291	1172.4069	1	663.4	70.0%	1	R.HQGVMVGMGQK.D	2 2 2 2
step06.14184.14184.2	3.4169	0.447	1517.505	1516.6869	1	1223.6	85.0%	8	K.IWHHTFYNELR.V	2 2 2 2
step03.11460.11460.2	4.6059	0.4139	1956.071	1955.2435	1	992.6	64.7%	3	R.VAPEEHPVLLTEAPLNPK.A	2
step04.14264.14264.2	4.5951	0.6124	3185.298	3185.5994	1	746.3	37.9%	3	R.TTGIVMDSGDGVTHTVPIYEGYALPHAILR.L	2
step04.14246.14246.3	7.2844	0.5495	3186.135	3185.5994	1	2778.8	39.7%	1	R.TTGIVMDSGDGVTHTVPIYEGYALPHAILR.L	3
step04.14001.14002.3	6.4338	0.542	3202.735	3201.5986	1	1833.1	34.5%	2	R.TTGIVM*DSGDGVTHTVPIYEGYALPHAILR.L	3
step01.8051.8051.2	4.7689	0.504	1792.318	1791.94	1	1550.1	80.0%	2	K.SYELPDGQVITIGNER.F	2 2 2 2 2

U	gi\|237649049\|ref\|NP_8	2	4	25.9%	108	12399	9.9	small nuclear ribonucleoprotein Sm D2 isoform 2 [Homo sapiens]
U	gi\|4759158\|ref\|NP_004	2	4	23.7%	118	13527	9.9	small nuclear ribonucleoprotein Sm D2 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.14861.14861.2	5.5713	0.5801	2163.839	2164.3584	1	1605.8	69.4%	2	K.REEEEFNTGPLSVLTQSVK.N	2
	step02.11950.11950.2	2.9625	0.2682	958.28	958.13727	1	910.6	81.2%	2	R.GDSVIVVLR.N	2

gi|224586884|ref|NP_0

25.7%

303

31947

9.7

DNA-binding protein A isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.9468.9470.3	4.4454	0.3912	1746.397	1745.9144	1	1988.8	53.6%	1	R.NDTKEDVFVHQTAIK.K	3 3 3 3
step03.9455.9455.2	5.1334	0.403	1746.56	1745.9144	1	1193.0	75.0%	3	R.NDTKEDVFVHQTAIK.K	2 2 2 2
step04.9909.9909.2	2.5944	0.2186	1874.921	1874.0874	1	485.6	50.0%	1	R.NDTKEDVFVHQTAIKK.N	2 2 2
step01.7266.7266.2	4.8597	0.5331	1797.495	1796.8671	1	1378.8	71.9%	3	R.SVGDGETVEFDVVEGEK.G	2 2 2 2
step01.5765.5765.2	3.7203	0.4508	1783.689	1783.8779	1	1106.1	63.9%	2	K.GAEAANVTGPDGVPVEGSR.Y	2 2
step02.6376.6376.3	5.2205	0.509	2678.932	2678.8103	1	1264.6	34.0%	2	R.PAPAVGEAEDKENQQATSGPNQPSVR.R	3 3

Similarities: gi|34098946|ref|NP_00(4:2)
gi|224586882|ref|NP_0(6:0)
gi|156415990|ref|NP_0(3:3)

U	gi\|4505409\|ref\|NP_002	3	6	25.7%	152	17298	8.4	nucleoside diphosphate kinase B [Homo sapiens]
U	gi\|66392227\|ref\|NP_00	3	6	25.7%	152	17298	8.4	nucleoside diphosphate kinase B [Homo sapiens]
U	gi\|66392205\|ref\|NP_00	3	6	25.7%	152	17298	8.4	nucleoside diphosphate kinase B [Homo sapiens]
U	gi\|66392192\|ref\|NP_00	3	6	25.7%	152	17298	8.4	nucleoside diphosphate kinase B [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.11446.11446.2	2.3886	0.1963	1346.626	1345.572	1	562.7	59.1%	2	R.TFIAIKPDGVQR.G	2 2 2
step05.13657.13657.2	2.9739	0.3337	1176.811	1176.3918	1	507.6	72.2%	2	K.DRPFFPGLVK.Y	2 2
step03.9124.9124.2	3.4662	0.3439	1786.74	1787.0315	1	376.9	56.2%	2	R.VMLGETNPADSKPGTIR.G	2 2 2

Similarities: gi|38045913|ref|NP_93(2:1)
gi|66392203|ref|NP_00(3:0)

gi|310129363|ref|XP_0

25.4%

1009

112176

5.2

PREDICTED: DNA damage-binding protein 1-like isoform 5 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.13460.13460.2	4.2962	0.3732	1688.523	1688.0043	1	2352.2	82.1%	4	R.LEIYVVTAEGLRPVK.E	2 2 2 2
step05.14728.14728.2	3.0319	0.3723	1204.507	1204.5101	1	1301.8	83.3%	4	K.IAVMELFRPK.G	2 2 2 2
step04.12615.12615.2	2.4964	0.394	1220.494	1220.5095	1	383.3	83.3%	2	K.IAVM*ELFRPK.G	2 2 2 2
step03.14115.14115.2	2.2374	0.2072	1435.575	1435.6903	2	465.8	58.3%	1	K.GESKDLLFILTAK.Y	2 2 2 2
step02.13370.13370.2	2.7104	0.3255	1099.465	1099.3904	1	761.3	72.2%	2	K.YLAIAPPIIK.Q	2 2 2
step05.13541.13541.2	3.9637	0.4954	1771.797	1771.9983	1	1163.8	71.9%	1	R.NGIGIHEHASIDLPGIK.G	2 2 2
step04.13211.13211.2	3.8925	0.5658	1644.268	1644.8981	1	1512.8	83.3%	2	R.ALYYLQIHPQELR.Q	2 2 2 2
step05.11353.11353.2	3.5951	0.4448	1313.787	1313.5715	1	963.9	81.8%	2	K.KVTLGTQPTVLR.T	2 2 2 2
step05.13079.13079.2	4.4071	0.4507	2584.749	2585.8047	1	630.7	45.5%	4	R.SLSTTNVFACSDRPTVIYSSNHK.L	2 2 2 2
step05.13066.13066.3	4.7156	0.4288	2586.249	2585.8047	1	1211.3	39.8%	4	R.SLSTTNVFACSDRPTVIYSSNHK.L	3 3 3 3
step04.12808.12808.2	6.3572	0.5556	2062.651	2062.2993	1	2732.1	84.4%	2	R.KICYQEVSQCFGVLSSR.I	2 2 2 2
step02.10884.10886.3	7.2537	0.5983	2954.599	2954.1514	1	2720.0	38.8%	1	R.IEVQDTSGGTTALRPSASTQALSSSVSSSK.L	3 3 3 3
step04.13670.13670.2	3.8862	0.4032	1884.565	1885.1271	1	1314.2	75.0%	4	R.TECNHYNNIMALYLK.T	2 2 2 2
step03.14051.14051.2	4.6979	0.4069	1466.781	1465.7432	1	2073.9	87.5%	3	K.TKGDFILVGDLMR.S	2 2 2 2
step03.14138.14138.2	3.7741	0.5343	2180.762	2181.5403	1	319.5	41.7%	2	R.SVLLLAYKPMEGNFEEIAR.D	2 2 2 2
step03.14145.14145.3	3.6618	0.3604	2182.567	2181.5403	1	1468.3	43.1%	1	R.SVLLLAYKPMEGNFEEIAR.D	3 3 3 3
step04.11676.11676.1	1.9047	0.318	974.538	975.0849	1	232.6	66.7%	1	K.IEHSFWR.S	1 1 1
step03.16388.16388.3	7.2568	0.5576	2650.692	2650.9648	1	1803.3	46.7%	4	R.KTEPATGFIDGDLIESFLDISRPK.M	3 3 3
step03.16397.16397.2	5.4603	0.4878	2652.153	2650.9648	1	1175.7	54.3%	3	R.KTEPATGFIDGDLIESFLDISRPK.M	2 2 2
step02.17306.17306.2	4.3861	0.3848	2521.822	2522.7917	1	638.7	45.5%	1	K.TEPATGFIDGDLIESFLDISRPK.M	2 2 2
step02.11352.11352.2	5.3017	0.485	2042.784	2042.2834	1	1654.8	67.6%	3	K.MQEVVANLQYDDGSGMKR.E	2 2 2

Similarities: gi|310129361|ref|XP_0(19:2)
gi|148529014|ref|NP_0(21:0)
gi|310129365|ref|XP_0(16:5)

gi|10863945|ref|NP_06

25.3%

732

82705

5.8

X-ray repair cross-complementing protein 5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16500.16500.2	4.5611	0.5534	1916.58	1916.1844	1	1878.8	83.3%	4	R.HLMLPDFDLLEDIESK.I	2
*	step05.14400.14400.2	4.2389	0.3851	1395.301	1395.6725	1	1757.8	86.4%	3	K.SQLDIIIHSLKK.C	2
*	step06.16258.16258.2	5.1386	0.5076	1901.098	1901.231	1	2444.7	83.3%	2	K.KCDISLQFFLPFSLGK.E	2
*	step06.12695.12695.2	2.7803	0.4231	1110.565	1110.2903	1	1071.1	85.0%	2	R.LGGHGPSFPLK.G	2
*	step03.20423.20423.2	4.1622	0.5306	2723.965	2725.0686	1	2533.3	56.0%	1	R.DDEAAAVALSSLIHALDDLDMVAIVR.Y	2
*	step02.20385.20385.3	4.4577	0.2773	2724.726	2725.0686	1	1282.2	31.0%	1	R.DDEAAAVALSSLIHALDDLDMVAIVR.Y	3
*	step03.19791.19791.2	2.861	0.3485	2740.219	2741.068	1	480.1	34.0%	1	R.DDEAAAVALSSLIHALDDLDM*VAIVR.Y	2
*	step02.19620.19620.3	4.6606	0.4413	2740.69	2741.068	1	1048.2	36.0%	4	R.DDEAAAVALSSLIHALDDLDM*VAIVR.Y	3
*	step03.15714.15714.3	3.7157	0.4445	2450.655	2450.7937	1	1246.6	34.1%	2	K.KYAPTEAQLNAVDALIDSMSLAK.K	3
*	step03.15676.15676.2	5.7633	0.5715	2450.66	2450.7937	1	2038.8	59.1%	2	K.KYAPTEAQLNAVDALIDSMSLAK.K	2
*	step05.13356.13356.2	2.388	0.2664	1087.493	1087.2933	1	937.9	85.7%	4	R.LFQCLLHR.A	2
*	step06.15494.15494.3	3.5856	0.149	2654.991	2655.068	1	767.3	33.0%	1	R.EPLPPIQQHIWNMLNPPAEVTTK.S	3
*	step03.6155.6155.3	4.9917	0.3926	2501.654	2500.663	1	1457.0	40.5%	1	K.KKDQVTAQEIFQDNHEDGPTAK.K	3
*	step03.17594.17594.3	7.4831	0.5433	3447.099	3446.7876	1	2186.4	34.8%	4	K.KASFEEASNQLINHIEQFLDTNETPYFMK.S	3
*	step02.18308.18308.3	4.9272	0.4213	3318.389	3318.6147	1	850.2	28.7%	4	K.ASFEEASNQLINHIEQFLDTNETPYFMK.S	3

U	gi\|14141152\|ref\|NP_00	20	41	25.3%	730	77516	8.7	heterogeneous nuclear ribonucleoprotein M isoform a [Homo sapiens]
U	gi\|157412270\|ref\|NP_1	20	41	26.8%	691	73621	8.8	heterogeneous nuclear ribonucleoprotein M isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step01.9480.9480.2	2.3967	0.2763	1264.471	1265.4822	2	558.9	75.0%	1	R.AFITNIPFDVK.W	2
step02.14765.14765.2	5.2664	0.5892	2028.075	2027.2819	1	847.0	73.5%	1	K.EKVGEVTYVELLM*DAEGK.S	2
step01.9147.9147.2	3.4846	0.4792	1769.948	1769.9945	1	2067.2	70.0%	2	K.VGEVTYVELLM*DAEGK.S	2
step01.8091.8092.2	2.8636	0.2518	1427.572	1427.6267	1	662.0	62.5%	2	R.LGSTVFVANLDYK.V	2
step04.11943.11943.2	4.21	0.4164	1451.413	1451.7595	1	2444.8	87.5%	2	K.LKEVFSM*AGVVVR.A	2
step03.13856.13856.3	4.2492	0.3364	2179.544	2179.573	1	982.5	35.2%	1	K.GIGMGNIGPAGMGMEGIGFGINK.M	3
step02.20373.20373.2	2.8763	0.4047	2179.586	2179.573	3	373.4	38.6%	8	K.GIGMGNIGPAGMGMEGIGFGINK.M	2
step03.10980.10980.2	4.5368	0.5606	2226.739	2227.5713	1	1119.3	59.1%	1	K.GIGMGNIGPAGMGM*EGIGFGINK.M	2
step02.12550.12550.2	4.2045	0.5488	1715.63	1715.9807	1	1478.2	71.9%	2	K.MGGMEGPFGGGMENMGR.F	2
step04.7691.7691.2	3.1559	0.4232	1102.406	1102.2736	1	975.6	85.0%	2	R.MGAGLGHGMDR.V	2
step04.12832.12832.2	4.2068	0.1621	1615.41	1614.8724	1	1192.9	75.0%	2	R.MGPLGLDHMASSIER.M	2
step03.11418.11418.2	3.3307	0.4469	1630.234	1630.8718	1	944.2	78.6%	1	R.M*GPLGLDHMASSIER.M	2
step04.9293.9293.2	2.7109	0.2646	1647.459	1646.8712	1	247.4	53.6%	2	R.MGPLGLDHMASSIER.M	2
step02.12080.12080.2	3.6887	0.4812	1126.411	1126.335	1	1171.7	90.0%	2	R.MGAGMGFGLER.M	2
step03.10227.10227.2	3.1978	0.2389	1444.559	1444.7058	1	1527.2	89.3%	2	R.M*GPAMGPALGAGIER.M	2
step03.9227.9227.2	2.5155	0.1038	1444.981	1444.7058	1	1367.6	75.0%	2	R.MGPAM*GPALGAGIER.M	2
step03.8313.8313.2	3.7275	0.5437	1459.907	1460.7052	1	1563.5	85.7%	2	R.MGPAMGPALGAGIER.M	2
step05.12458.12458.2	4.2328	0.4962	2035.653	2036.1555	1	1260.6	54.5%	2	R.GNFGGSFAGSFGGAGGHAPGVAR.K	2
step05.12466.12466.3	4.014	0.5154	2036.581	2036.1555	1	978.9	36.4%	2	R.GNFGGSFAGSFGGAGGHAPGVAR.K	3
step03.10970.10970.2	4.7093	0.4554	1810.557	1809.9935	1	1336.0	78.6%	2	K.DKFNECGHVLYADIK.M	2

U	gi\|58761496\|ref\|NP_00	8	16	25.3%	320	34225	9.0	heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens]
U	gi\|58761498\|ref\|NP_00	8	16	25.3%	320	34225	9.0	heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.13872.13872.2	5.7709	0.4547	1914.739	1914.1483	1	2532.9	84.4%	4	R.KLFIGGLSFETTDESLR.S	2 2
	step03.13146.13146.2	5.1648	0.5315	1966.263	1967.1882	1	2078.3	80.0%	2	R.SHFEQWGTLTDCVVMR.D	2 2
2	step06.12703.12703.3	4.3425	0.4841	2009.31	2009.2545	1	1302.3	50.0%	1	K.KIFVGGIKEDTEEHHLR.D	3 3 3
2	step04.12090.12090.2	5.2139	0.4918	1881.565	1881.0815	1	2088.9	80.0%	4	K.IFVGGIKEDTEEHHLR.D	2 2 2
	step02.13716.13718.2	3.331	0.4195	1219.084	1219.4336	1	1634.3	94.4%	1	K.IEVIEIMTDR.G	2 2
	step03.12903.12903.2	2.5133	0.2547	1856.624	1856.9722	1	514.8	53.3%	1	K.RGFAFVTFDDHDSVDK.I	2 2
	step02.13763.13763.2	5.0223	0.485	1701.345	1700.7859	1	1641.9	82.1%	2	R.GFAFVTFDDHDSVDK.I	2 2
	step03.13752.13752.2	2.8936	0.2825	2283.186	2282.5366	4	210.6	34.2%	1	R.GFAFVTFDDHDSVDKIVIQK.Y	2 2

Similarities: gi|14043070|ref|NP_11(8:0)
gi|14043072|ref|NP_11(2:6)

U	gi\|11415030\|ref\|NP_06	5	8	25.2%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|77539758\|ref\|NP_00	5	8	25.2%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|4504323\|ref\|NP_003	5	8	25.2%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|4504321\|ref\|NP_003	5	8	25.2%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|4504315\|ref\|NP_003	5	8	25.2%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|4504313\|ref\|NP_003	5	8	25.2%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|4504311\|ref\|NP_003	5	8	25.2%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|4504309\|ref\|NP_003	5	8	25.2%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|4504305\|ref\|NP_003	5	8	25.2%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|4504303\|ref\|NP_003	5	8	25.2%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|4504301\|ref\|NP_003	5	8	25.2%	103	11367	11.4	histone H4 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.8378.8378.2	3.117	0.1593	1326.665	1326.5271	2	1030.0	77.3%	2	R.DNIQGITKPAIR.R	2
step05.14384.14384.2	4.7559	0.3291	1595.695	1595.9319	1	1901.0	84.6%	2	R.KTVTAMDVVYALKR.Q	2
step05.14360.14360.3	3.5981	0.163	1596.023	1595.9319	3	503.2	44.2%	1	R.KTVTAMDVVYALKR.Q	3
step01.8975.8975.2	2.6981	0.4186	1311.549	1311.5726	1	1118.7	86.4%	2	K.TVTAMDVVYALK.R	2
step05.14580.14580.2	2.3574	0.2927	1468.002	1467.759	1	732.7	66.7%	1	K.TVTAMDVVYALKR.Q	2

U	gi\|148529014\|ref\|NP_0	24	56	24.9%	1140	126968	5.3	DNA damage-binding protein 1 [Homo sapiens]
U	gi\|310129359\|ref\|XP_0	24	56	24.9%	1140	126968	5.3	PREDICTED: DNA damage-binding protein 1-like isoform 3 [Homo sapiens]
U	gi\|310129356\|ref\|XP_0	24	56	24.9%	1140	126968	5.3	PREDICTED: DNA damage-binding protein 1-like isoform 2 [Homo sapiens]
U	gi\|239750064\|ref\|XP_0	24	56	24.9%	1140	126968	5.3	PREDICTED: DNA damage-binding protein 1-like isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.13460.13460.2	4.2962	0.3732	1688.523	1688.0043	1	2352.2	82.1%	4	R.LEIYVVTAEGLRPVK.E	2 2 2 2
step05.14728.14728.2	3.0319	0.3723	1204.507	1204.5101	1	1301.8	83.3%	4	K.IAVMELFRPK.G	2 2 2 2
step04.12615.12615.2	2.4964	0.394	1220.494	1220.5095	1	383.3	83.3%	2	K.IAVM*ELFRPK.G	2 2 2 2
step03.14115.14115.2	2.2374	0.2072	1435.575	1435.6903	2	465.8	58.3%	1	K.GESKDLLFILTAK.Y	2 2 2 2
step03.13464.13464.2	3.6221	0.4647	1984.643	1984.2367	1	355.7	58.8%	2	R.IGRPSETGIIGIIDPECR.M	2 2
step03.13474.13474.3	4.6528	0.4613	1984.697	1984.2367	1	1634.9	50.0%	1	R.IGRPSETGIIGIIDPECR.M	3 3
step02.12324.12324.2	3.3589	0.4522	1195.824	1195.3903	1	920.0	83.3%	2	R.LEELHVIDVK.F	2 2
step02.13370.13370.2	2.7104	0.3255	1099.465	1099.3904	1	761.3	72.2%	2	K.YLAIAPPIIK.Q	2 2 2
step05.13541.13541.2	3.9637	0.4954	1771.797	1771.9983	1	1163.8	71.9%	1	R.NGIGIHEHASIDLPGIK.G	2 2 2
step04.13211.13211.2	3.8925	0.5658	1644.268	1644.8981	1	1512.8	83.3%	2	R.ALYYLQIHPQELR.Q	2 2 2 2
step05.11353.11353.2	3.5951	0.4448	1313.787	1313.5715	1	963.9	81.8%	2	K.KVTLGTQPTVLR.T	2 2 2 2
step05.13079.13079.2	4.4071	0.4507	2584.749	2585.8047	1	630.7	45.5%	4	R.SLSTTNVFACSDRPTVIYSSNHK.L	2 2 2 2
step05.13066.13066.3	4.7156	0.4288	2586.249	2585.8047	1	1211.3	39.8%	4	R.SLSTTNVFACSDRPTVIYSSNHK.L	3 3 3 3
step04.12808.12808.2	6.3572	0.5556	2062.651	2062.2993	1	2732.1	84.4%	2	R.KICYQEVSQCFGVLSSR.I	2 2 2 2
step02.10884.10886.3	7.2537	0.5983	2954.599	2954.1514	1	2720.0	38.8%	1	R.IEVQDTSGGTTALRPSASTQALSSSVSSSK.L	3 3 3 3
step04.13670.13670.2	3.8862	0.4032	1884.565	1885.1271	1	1314.2	75.0%	4	R.TECNHYNNIMALYLK.T	2 2 2 2
step03.14051.14051.2	4.6979	0.4069	1466.781	1465.7432	1	2073.9	87.5%	3	K.TKGDFILVGDLMR.S	2 2 2 2
step03.14138.14138.2	3.7741	0.5343	2180.762	2181.5403	1	319.5	41.7%	2	R.SVLLLAYKPMEGNFEEIAR.D	2 2 2 2
step03.14145.14145.3	3.6618	0.3604	2182.567	2181.5403	1	1468.3	43.1%	1	R.SVLLLAYKPMEGNFEEIAR.D	3 3 3 3
step04.11676.11676.1	1.9047	0.318	974.538	975.0849	1	232.6	66.7%	1	K.IEHSFWR.S	1 1 1
step03.16388.16388.3	7.2568	0.5576	2650.692	2650.9648	1	1803.3	46.7%	4	R.KTEPATGFIDGDLIESFLDISRPK.M	3 3 3
step03.16397.16397.2	5.4603	0.4878	2652.153	2650.9648	1	1175.7	54.3%	3	R.KTEPATGFIDGDLIESFLDISRPK.M	2 2 2
step02.17306.17306.2	4.3861	0.3848	2521.822	2522.7917	1	638.7	45.5%	1	K.TEPATGFIDGDLIESFLDISRPK.M	2 2 2
step02.11352.11352.2	5.3017	0.485	2042.784	2042.2834	1	1654.8	67.6%	3	K.MQEVVANLQYDDGSGMKR.E	2 2 2

Similarities: gi|310129361|ref|XP_0(19:5)
gi|310129363|ref|XP_0(21:3)
gi|310129365|ref|XP_0(19:5)

gi|17158044|ref|NP_00

24.9%

249

28681

10.8

40S ribosomal protein S6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13249.13249.2	4.4418	0.3267	1596.3	1595.8822	1	1410.4	76.9%	2	-.MKLNISFPATGCQK.L	2
*	step05.12095.12095.2	4.9157	0.4353	1612.89	1611.8816	1	1236.5	80.8%	1	-.M*KLNISFPATGCQK.L	2
*	step01.7337.7337.2	2.3281	0.1009	1335.149	1336.5122	2	526.1	63.6%	1	K.LNISFPATGCQK.L	2
*	step01.7925.7925.2	3.9304	0.3727	1621.086	1621.7936	1	2318.6	78.6%	2	R.MATEVAADALGEEWK.G	2
*	step01.7500.7500.2	3.9681	0.5117	1637.488	1637.793	1	3180.4	89.3%	1	R.M*ATEVAADALGEEWK.G	2
*	step02.14610.14610.2	4.933	0.5921	2196.533	2196.4688	1	1863.1	65.8%	2	R.MATEVAADALGEEWKGYVVR.I	2
*	step03.9537.9537.2	3.9866	0.3974	1727.798	1727.9406	1	923.2	66.7%	4	K.KGEKDIPGLTDTTVPR.R	2
*	step03.9581.9581.3	3.9359	0.2877	1728.253	1727.9406	1	945.6	46.7%	2	K.KGEKDIPGLTDTTVPR.R	3
*	step01.6635.6635.2	2.2871	0.3689	1285.336	1285.4287	1	600.7	86.4%	1	K.DIPGLTDTTVPR.R	2
*	step04.12141.12141.2	2.8749	0.2817	1464.638	1464.6486	1	879.0	81.8%	2	R.KLFNLSKEDDVR.Q	2
*	step02.11968.11968.1	1.9923	0.132	1335.993	1336.4757	2	222.2	60.0%	1	K.LFNLSKEDDVR.Q	1
*	step02.11942.11942.2	3.1182	0.3661	1336.246	1336.4757	1	755.1	85.0%	2	K.LFNLSKEDDVR.Q	2

gi|50592996|ref|NP_00

117

24.7%

450

50433

4.9

tubulin beta-3 chain [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step06.12434.12434.2	5.8051	0.5203	2110.757	2111.4084	1	2312.3	72.2%	3	-.MREIVHIQAGQCGNQIGAK.F	2 2 2 2 2
2	step06.12430.12430.3	6.4021	0.4806	2111.682	2111.4084	1	4652.8	56.9%	2	-.MREIVHIQAGQCGNQIGAK.F	3 3 3 3 3
2	step06.12022.12022.2	4.2487	0.503	2126.561	2127.408	1	902.4	72.2%	2	-.M*REIVHIQAGQCGNQIGAK.F	2 2 2 2 2
2	step06.12280.12280.3	4.9361	0.4501	2126.8	2127.408	1	1884.1	51.4%	2	-.M*REIVHIQAGQCGNQIGAK.F	3 3 3 3 3
2	step02.10074.10074.2	4.4512	0.5212	1824.591	1824.025	1	633.1	68.8%	6	R.EIVHIQAGQCGNQIGAK.F	2 2 2 2 2
2	step03.9005.9005.3	3.7838	0.415	1824.709	1824.025	1	1805.6	46.9%	1	R.EIVHIQAGQCGNQIGAK.F	3 3 3 3 3
	step01.8475.8475.2	3.6591	0.4211	1616.322	1616.8616	1	1107.3	82.1%	2	R.AILVDLEPGTMDSVR.S	2 2 2
	step01.7797.7797.2	3.8386	0.5323	1632.488	1632.861	1	1085.4	82.1%	2	R.AILVDLEPGTM*DSVR.S	2 2 2
	step02.15944.15944.2	7.5527	0.5376	1959.75	1960.1339	1	3984.2	85.3%	2	K.GHYTEGAELVDSVLDVVR.K	2 2 2 2
	step02.15968.15968.3	4.3949	0.3139	1960.921	1960.1339	1	1422.6	42.6%	3	K.GHYTEGAELVDSVLDVVR.K	3 3 3 3
	step03.15002.15002.3	4.5573	0.4038	2088.595	2088.307	1	1028.9	47.2%	2	K.GHYTEGAELVDSVLDVVRK.E	3 3 3 3
	step03.15008.15008.2	6.0203	0.4753	2088.742	2088.307	1	2439.7	75.0%	3	K.GHYTEGAELVDSVLDVVRK.E	2 2 2 2
	step01.10437.10437.2	3.6715	0.282	1320.893	1320.5828	1	1352.6	77.3%	14	R.IMNTFSVVPSPK.V	2 2 2 2
	step01.11670.11670.2	2.3001	0.4026	1336.21	1336.5822	58	134.8	50.0%	1	R.IM*NTFSVVPSPK.V	2 2 2 2
	step02.10832.10832.1	2.1846	0.2528	1130.717	1131.2664	1	277.6	66.7%	1	R.FPGQLNADLR.K	1 1 1 1 1 1 1 1 1 1
	step02.11042.11042.2	3.013	0.4079	1131.393	1131.2664	1	848.0	94.4%	4	R.FPGQLNADLR.K	2 2 2 2 2 2 2 2 2 2
	step04.10136.10136.2	2.7872	0.382	1259.398	1259.4392	1	752.3	80.0%	7	R.FPGQLNADLRK.L	2 2 2 2 2 2 2 2 2 2
	step06.14200.14200.2	3.8338	0.4589	1272.57	1272.5878	1	1504.8	90.0%	2	R.KLAVNMVPFPR.L	2 2 2 2 2 2 2 2 2
	step06.13178.13180.2	3.0521	0.3533	1288.75	1288.5872	1	815.7	80.0%	1	R.KLAVNM*VPFPR.L	2 2 2 2 2 2 2 2 2
	step03.2450.2450.2	3.818	0.4577	1143.686	1144.4148	1	1048.0	94.4%	37	K.LAVNMVPFPR.L	2 2 2 2 2 2 2 2 2
	step03.12213.12213.1	2.111	0.3746	1143.734	1144.4148	8	261.9	61.1%	2	K.LAVNMVPFPR.L	1 1 1 1 1 1 1 1 1
	step03.10961.10961.2	2.9904	0.3932	1160.312	1160.4142	1	974.6	83.3%	2	K.LAVNM*VPFPR.L	2 2 2 2 2 2 2 2 2
	step02.14250.14250.1	2.9138	0.3564	1697.949	1697.8715	1	253.7	50.0%	1	K.NSSYFVEWIPNNVK.V	1 1 1 1 1 1
	step02.970.970.2	3.6357	0.3183	1698.374	1697.8715	1	693.0	65.4%	6	K.NSSYFVEWIPNNVK.V	2 2 2 2 2 2
	step02.14234.14234.3	3.7057	0.2844	1698.395	1697.8715	1	748.1	46.2%	2	K.NSSYFVEWIPNNVK.V	3 3 3 3 3 3
	step05.13883.13883.2	3.9346	0.436	1386.708	1386.6045	1	739.7	85.0%	3	K.RISEQFTAMFR.R	2 2 2 2 2
	step01.11046.11046.2	3.3161	0.3586	1229.961	1230.4182	1	1279.7	88.9%	4	R.ISEQFTAMFR.R	2 2 2 2 2

gi|50593002|ref|NP_00

24.7%

255

28416

8.6

U2 small nuclear ribonucleoprotein A' [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16900.16900.3	7.4849	0.6015	3155.756	3155.4602	1	3748.2	43.5%	2	R.GYKIPVIENLGATLDQFDAIDFSDNEIR.K	3
*	step05.14209.14209.1	1.8105	0.2348	1058.655	1059.2864	1	213.0	62.5%	1	R.KLDGFPLLR.R	1
*	step04.13607.13607.2	2.9782	0.3403	1059.523	1059.2864	1	1061.6	93.8%	3	R.KLDGFPLLR.R	2
	step03.9138.9138.2	2.689	0.2197	1346.644	1346.5137	1	558.8	62.5%	1	K.TFNPGAGLPTDKK.K	2 2
	step03.6090.6090.2	3.89	0.4116	1255.731	1255.4026	1	1715.8	83.3%	2	K.KGGPSPGDVEAIK.N	2 2

Similarities: gi|310127973|ref|XP_0(2:3)

gi|4506691|ref|NP_001

24.7%

146

16445

10.2

40S ribosomal protein S16 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.11398.11398.2	3.1252	0.3904	1187.861	1188.3611	1	1547.7	85.0%	19	K.GPLQSVQVFGR.K	2
*	step06.12650.12650.2	4.4616	0.5068	1469.743	1469.7164	1	1887.6	80.8%	2	R.VKGGGHVAQIYAIR.Q	2
*	step05.11345.11345.2	3.4479	0.4156	1242.52	1242.4119	1	1124.4	77.3%	4	K.GGGHVAQIYAIR.Q	2
*	step02.12944.12944.2	2.6224	0.3408	1405.889	1406.609	1	452.4	80.0%	1	K.EIKDILIQYDR.T	2

U	gi\|120407068\|ref\|NP_0	9	19	24.4%	393	43653	6.8	cellular tumor antigen p53 isoform a [Homo sapiens]
U	gi\|187830777\|ref\|NP_0	9	19	24.4%	393	43653	6.8	cellular tumor antigen p53 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.12017.12017.2	2.9362	0.3926	1031.076	1031.19	1	1323.7	94.4%	3	R.LGFLHSGTAK.S	2 2
step02.12814.12814.2	3.8322	0.2425	1912.698	1912.129	1	1065.1	68.8%	2	K.TCPVQLWVDSTPPPGTR.V	2 2 2 2
step03.9780.9780.2	3.2773	0.3334	1666.544	1666.8108	2	368.7	57.1%	2	R.CSDSDGLAPPQHLIR.V	2 2 2 2
step05.15600.15600.3	3.8844	0.4452	2069.028	2069.3914	1	1038.0	40.3%	1	R.RPILTIITLEDSSGNLLGR.N	3 3 3 3
step05.15598.15598.2	6.0737	0.5519	2069.037	2069.3914	1	1122.7	72.2%	4	R.RPILTIITLEDSSGNLLGR.N	2 2 2 2
step05.13838.13840.2	4.2432	0.4892	1708.532	1708.982	1	1466.6	92.3%	1	K.KKPLDGEYFTLQIR.G	2 2
step03.12963.12963.2	2.4801	0.277	1581.186	1580.8092	23	260.9	45.8%	1	K.KPLDGEYFTLQIR.G	2 2
step03.6224.6224.2	5.8739	0.3836	2213.656	2213.391	1	800.5	55.0%	2	R.ELNEALELKDAQAGKEPGGSR.A	2 2
step03.6225.6225.3	5.2655	0.5137	2214.724	2213.391	1	1639.3	43.8%	3	R.ELNEALELKDAQAGKEPGGSR.A	3 3

Similarities: gi|187830894|ref|NP_0(8:1)
gi|187830901|ref|NP_0(4:5)
gi|187830823|ref|NP_0(5:4)

gi|14269586|ref|NP_11

24.4%

205

24212

10.4

28S ribosomal protein S26, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16960.16960.2	4.3683	0.4837	2062.693	2063.429	1	778.2	67.6%	2	R.VNMPPAVDPAEFFVLMER.Y	2
*	step02.16984.16984.3	4.6347	0.518	2063.877	2063.429	1	1586.2	47.1%	2	R.VNMPPAVDPAEFFVLMER.Y	3
*	step02.16422.16422.2	5.1233	0.4892	2079.647	2079.4285	1	1528.6	70.6%	1	R.VNM*PPAVDPAEFFVLMER.Y	2
*	step02.15137.15137.3	4.9043	0.5516	2095.195	2095.4277	1	1716.1	45.6%	2	R.VNMPPAVDPAEFFVLMER.Y	3
*	step03.7874.7874.2	3.4211	0.3728	1316.615	1316.4476	1	1481.5	90.0%	3	R.KAEEVQAWAQR.K	2
*	step02.11453.11453.2	3.9809	0.1903	1501.782	1500.6792	2	515.4	77.3%	4	K.EREVLQLQEEVK.N	2
*	step05.11616.11616.1	1.982	0.2542	1166.263	1166.314	29	140.5	50.0%	1	R.KNYNWAITR.E	1
*	step05.11605.11605.2	3.0068	0.3153	1166.533	1166.314	1	747.8	93.8%	3	R.KNYNWAITR.E	2

U	gi\|187830901\|ref\|NP_0	4	9	24.4%	209	23726	7.9	cellular tumor antigen p53 isoform e [Homo sapiens]
U	gi\|187830909\|ref\|NP_0	4	9	23.8%	214	24401	8.0	cellular tumor antigen p53 isoform f [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.12814.12814.2	3.8322	0.2425	1912.698	1912.129	1	1065.1	68.8%	2	K.TCPVQLWVDSTPPPGTR.V	2 2 2 2
step03.9780.9780.2	3.2773	0.3334	1666.544	1666.8108	2	368.7	57.1%	2	R.CSDSDGLAPPQHLIR.V	2 2 2 2
step05.15600.15600.3	3.8844	0.4452	2069.028	2069.3914	1	1038.0	40.3%	1	R.RPILTIITLEDSSGNLLGR.N	3 3 3 3
step05.15598.15598.2	6.0737	0.5519	2069.037	2069.3914	1	1122.7	72.2%	4	R.RPILTIITLEDSSGNLLGR.N	2 2 2 2

Similarities: gi|187830894|ref|NP_0(4:0)
gi|120407068|ref|NP_0(4:0)
gi|187830823|ref|NP_0(4:0)

U	gi\|310110326\|ref\|XP_0	5	9	24.4%	168	19300	4.8	PREDICTED: s-phase kinase-associated protein 1-like isoform 2 [Homo sapiens]
U	gi\|310129506\|ref\|XP_0	5	9	25.2%	163	18703	4.7	PREDICTED: s-phase kinase-associated protein 1-like isoform 1 [Homo sapiens]
U	gi\|310129504\|ref\|XP_0	5	9	24.4%	168	19300	4.8	PREDICTED: s-phase kinase-associated protein 1-like isoform 2 [Homo sapiens]
U	gi\|310122854\|ref\|XP_0	5	9	25.2%	163	18703	4.7	PREDICTED: s-phase kinase-associated protein 1-like isoform 1 [Homo sapiens]
U	gi\|310122852\|ref\|XP_0	5	9	24.4%	168	19300	4.8	PREDICTED: s-phase kinase-associated protein 1-like isoform 2 [Homo sapiens]
U	gi\|310110328\|ref\|XP_0	5	9	25.2%	163	18703	4.7	PREDICTED: s-phase kinase-associated protein 1-like isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.14356.14356.2	5.1634	0.3934	1763.294	1762.9435	1	1892.5	84.6%	2	K.RTDDIPVWDQEFLK.V	2 2
step02.14363.14363.3	3.859	0.4004	1763.6	1762.9435	1	1411.4	53.8%	1	K.RTDDIPVWDQEFLK.V	3 3
step01.8974.8974.2	2.3486	0.3155	1605.676	1606.7571	1	711.9	83.3%	2	R.TDDIPVWDQEFLK.V	2 2
step03.17260.17260.2	4.1886	0.4279	2137.01	2137.461	1	2568.5	66.7%	3	K.VDQGTLFELILAANYLDIK.G	2 2
step01.6552.6552.1	1.8127	0.2703	906.656	906.05255	5	293.3	57.1%	1	K.GLLDVTCK.T	1 1

Similarities: gi|25777711|ref|NP_00(5:0)

gi|100913206|ref|NP_0

24.3%

1270

140958

6.8

ATP-dependent RNA helicase A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.8295.8295.2	2.8091	0.3489	1026.305	1026.1702	1	1086.2	92.9%	2	R.DFVNYLVR.I	2
*	step04.14291.14291.3	7.715	0.5792	3483.907	3483.698	1	2548.0	34.2%	5	R.KEEQEVQATLESEEVDLNAGLHGNWTLENAK.A	3
*	step05.12396.12396.2	4.2639	0.5452	1416.945	1417.6732	1	2167.5	91.7%	3	K.KLAAQSCALSLVR.Q	2
*	step02.15237.15237.2	4.9932	0.5252	2486.838	2487.731	1	1883.9	60.5%	2	K.NELMYQLEQDHDLQAILQER.E	2
*	step02.15224.15224.3	3.9341	0.4861	2487.3	2487.731	1	1189.0	36.8%	1	K.NELMYQLEQDHDLQAILQER.E	3
*	step02.14733.14733.3	4.7563	0.4229	2503.445	2503.7305	1	1287.1	40.8%	1	K.NELM*YQLEQDHDLQAILQER.E	3
*	step03.15174.15174.2	3.5826	0.4669	2176.253	2176.4985	1	654.7	61.1%	1	K.KFESEILEAISQNSVVIIR.G	2
*	step04.8094.8094.2	3.1048	0.2651	1088.37	1088.243	1	868.4	94.4%	3	R.RISAVSVAER.V	2
*	step03.11433.11433.3	3.8677	0.3105	1505.204	1504.6727	1	1447.1	54.2%	2	R.GISHVIVDEIHER.D	3
*	step03.11434.11434.2	4.408	0.5121	1505.591	1504.6727	1	1257.1	79.2%	2	R.GISHVIVDEIHER.D	2
*	step03.17990.17990.2	5.4436	0.467	2434.213	2434.8342	1	1303.7	50.0%	3	R.LSMSQLNEKETPFELIEALLK.Y	2
*	step04.17976.17976.3	5.4376	0.3005	2435.912	2434.8342	1	1846.8	41.2%	4	R.LSMSQLNEKETPFELIEALLK.Y	3
*	step03.17576.17576.3	5.9693	0.5553	2450.718	2450.8337	1	1860.7	40.0%	2	R.LSM*SQLNEKETPFELIEALLK.Y	3
*	step03.17591.17591.2	4.1787	0.5418	2451.093	2450.8337	1	242.3	42.5%	2	R.LSM*SQLNEKETPFELIEALLK.Y	2
*	step05.13220.13222.2	2.9621	0.3807	1465.333	1465.7245	1	838.0	77.3%	1	R.YQILPLHSQIPR.E	2
*	step04.11733.11733.2	3.9799	0.4623	1286.243	1286.5446	1	744.5	77.3%	2	R.KVFDPVPVGVTK.V	2
*	step04.13322.13322.2	5.3323	0.6027	2069.938	2070.3167	1	1352.5	64.7%	2	K.LFTAHNNMTNYATVWASK.T	2
*	step04.13332.13332.3	4.134	0.3668	2070.238	2070.3167	1	726.4	41.2%	1	K.LFTAHNNMTNYATVWASK.T	3
*	step04.12429.12429.2	4.1714	0.1894	2086.013	2086.3162	1	555.4	58.8%	1	K.LFTAHNNM*TNYATVWASK.T	2
*	step03.9606.9606.2	2.716	0.4043	1408.418	1408.6288	2	457.8	65.0%	1	R.LETHM*TPEMFR.T	2
*	step03.6462.6464.2	2.374	0.3587	1424.302	1424.6282	1	309.9	65.0%	2	R.LETHMTPEMFR.T	2
*	step02.13071.13071.2	3.12	0.4997	1003.896	1004.2076	1	1055.3	94.4%	2	R.LGGIGQFLAK.A	2
*	step03.14348.14348.2	3.7298	0.4905	1971.08	1972.231	1	744.2	73.5%	2	K.AIEPPPLDAVIEAEHTLR.E	2
*	step01.7860.7860.2	2.7579	0.1662	1741.858	1742.8657	1	1609.2	70.0%	1	R.ELDALDANDELTPLGR.I	2
*	step03.15980.15980.2	6.2982	0.5136	2077.945	2078.2722	1	2726.6	76.5%	2	R.FSDHVALLSVFQAWDDAR.M	2
*	step02.15195.15195.2	3.1117	0.2855	1318.586	1318.5004	1	789.6	75.0%	2	K.YPSPFFVFGEK.I	2
*	step03.18178.18179.2	4.6592	0.5359	1733.179	1733.1516	1	971.4	76.7%	15	K.GMTLVTPLQLLLFASK.K	2
*	step02.18362.18362.3	3.8253	0.4777	1733.478	1733.1516	1	1165.9	48.3%	1	K.GMTLVTPLQLLLFASK.K	3
*	step04.17060.17060.2	4.3773	0.4956	1748.922	1749.151	1	1220.4	76.7%	6	K.GM*TLVTPLQLLLFASK.K	2
*	step03.17111.17111.3	4.151	0.4949	1749.442	1749.151	1	1674.0	53.3%	4	K.GM*TLVTPLQLLLFASK.K	3
*	step02.14736.14736.2	4.1518	0.385	1843.61	1844.1012	1	1888.4	70.0%	1	K.KVQSDGQIVLVDDWIK.L	2
*	step04.12154.12154.2	4.7048	0.5588	1640.432	1640.8596	1	2791.9	82.1%	4	K.LQISHEAAACITGLR.A	2

gi|66346683|ref|NP_00

24.2%

393

43135

8.4

plasminogen activator inhibitor 1 RNA-binding protein isoform 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step01.9532.9532.2	5.4439	0.4645	1944.625	1945.0713	1	3149.9	83.3%	2	R.FDQLFDDESDPFEVLK.A	2 2 2 2
step05.10153.10153.2	2.5832	0.3229	1350.572	1350.5886	1	601.0	70.8%	1	R.KNPLPPSVGVVDK.K	2 2 2 2
step06.12132.12132.2	2.8382	0.2229	1478.51	1478.7615	2	790.5	73.1%	4	R.KNPLPPSVGVVDKK.E	2 2 2 2
step04.9279.9279.2	2.4877	0.2648	1350.782	1350.5886	2	393.2	66.7%	2	K.NPLPPSVGVVDKK.E	2 2 2 2
step04.9411.9411.2	2.4639	0.2808	1113.345	1113.2046	1	744.2	77.8%	1	R.SSFSHYSGLK.H	2 2
step03.5842.5842.3	4.1952	0.1091	2194.291	2193.1936	1	676.6	45.1%	2	K.SKS#EEAHAEDSVMDHHFR.K	3 3 3 3
step03.6021.6021.3	4.7413	0.552	1898.439	1897.9631	1	1462.6	46.7%	2	K.SEEAHAEDSVMDHHFR.K	3 3 3 3
step03.13737.13737.2	5.1558	0.5759	2088.9	2089.2947	1	1996.8	77.8%	1	R.KPANDITSQLEINFGDLGR.P	2 2 2 2
step01.7577.7577.2	3.0696	0.3577	1761.129	1760.8364	1	1021.6	58.8%	2	K.SSASAPDVDDPEAFPALA.-	2 2 2 2

Similarities: gi|66346679|ref|NP_00(9:0)
gi|66346681|ref|NP_00(8:1)
gi|66346685|ref|NP_05(8:1)

gi|238776833|ref|NP_0

24.2%

264

27558

11.1

THO complex subunit 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13290.13290.3	4.0446	0.4421	2705.575	2704.891	1	637.4	30.0%	1	K.QLPDKWQHDLFDSGFGGGAGVETGGK.L	3
*	step05.17884.17884.2	4.8537	0.6104	2970.212	2971.3499	1	1126.9	46.2%	6	K.LLVSNLDFGVSDADIQELFAEFGTLKK.A	2
*	step05.17866.17866.3	5.0185	0.4211	2970.676	2971.3499	1	1001.5	31.7%	7	K.LLVSNLDFGVSDADIQELFAEFGTLKK.A	3
*	step03.9225.9225.2	3.2963	0.4341	1232.463	1232.3275	1	1255.8	90.0%	5	R.SLGTADVHFER.K	2

U	gi\|32455264\|ref\|NP_85	3	6	24.1%	199	22110	8.1	peroxiredoxin-1 [Homo sapiens]
U	gi\|4505591\|ref\|NP_002	3	6	24.1%	199	22110	8.1	peroxiredoxin-1 [Homo sapiens]
U	gi\|32455266\|ref\|NP_85	3	6	24.1%	199	22110	8.1	peroxiredoxin-1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.11340.11340.2	2.5944	0.3385	981.521	981.13257	1	617.3	81.2%	1	K.IGHPAPNFK.A	2
step05.13639.13640.2	3.5333	0.1775	1752.715	1752.0719	3	345.2	50.0%	1	K.KQGGLGPMNIPLVSDPK.R	2
step05.11653.11653.3	4.808	0.3978	2407.847	2407.6606	1	1490.3	38.1%	4	K.HGEVCPAGWKPGSDTIKPDVQK.S	3

gi|4506707|ref|NP_001

24.0%

125

13742

10.1

40S ribosomal protein S25 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13179.13179.2	3.6232	0.411	1319.54	1319.5314	1	1392.9	85.0%	1	R.DKLNNLVLFDK.A	2
*	step01.8246.8246.2	3.3935	0.3099	1076.302	1076.2706	1	1056.6	87.5%	2	K.LNNLVLFDK.A	2
*	step01.9615.9615.2	2.2887	0.173	1085.198	1085.279	7	325.1	61.1%	1	K.LITPAVVSER.L	2
*	step01.7814.7814.2	3.1949	0.3656	973.352	973.1487	1	1340.3	93.8%	2	R.AALQELLSK.G	2

gi|4759160|ref|NP_004

23.8%

126

13916

10.3

small nuclear ribonucleoprotein Sm D3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.10288.10288.2	5.6899	0.5458	2414.732	2415.595	1	3022.1	75.0%	1	K.VLHEAEGHIVTCETNTGEVYR.G	2
*	step03.10306.10306.3	6.2345	0.5016	2416.173	2415.595	1	2824.5	48.8%	2	K.VLHEAEGHIVTCETNTGEVYR.G	3
*	step02.14264.14264.2	2.6455	0.1131	1106.497	1106.4032	3	959.0	81.2%	1	R.FLILPDM*LK.N	2

gi|153791431|ref|NP_0

23.6%

140

15651

8.9

ribonuclease P protein subunit p20 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18896.18896.2	2.262	0.0839	1741.414	1741.9924	7	353.0	46.2%	1	R.RPNDIYVNMKTDFK.A	2
*	step04.13316.13316.2	4.1325	0.4565	2088.122	2087.3186	1	703.3	55.6%	1	R.GQNACSEIYIHGLGLAINR.A	2

gi|15011936|ref|NP_00

23.5%

115

13015

11.0

40S ribosomal protein S26 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.8948.8948.2	3.6846	0.3374	1654.517	1654.8417	1	1577.6	78.6%	1	R.DISEASVFDAYVLPK.L	2
*	step05.11821.11821.2	3.239	0.5459	1475.779	1475.6615	1	1094.3	81.8%	2	K.LHYCVSCAIHSK.V	2

U	gi\|16332358\|ref\|NP_27	18	23	23.3%	782	91332	5.5	cell division protein kinase 11B isoform 2 [Homo sapiens]
U	gi\|16332372\|ref\|NP_27	18	23	23.6%	771	90047	5.4	cell division protein kinase 11B isoform 9 [Homo sapiens]
U	gi\|16332370\|ref\|NP_27	18	23	23.3%	780	91009	5.4	cell division protein kinase 11B isoform 8 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step01.7158.7158.2	2.6869	0.1366	1089.527	1089.2213	3	468.7	75.0%	2	K.TLDEILQEK.K	2 2
step02.10979.10979.2	2.3112	0.2115	1536.665	1536.6716	5	431.9	62.5%	1	R.ENENHLLVVPESR.F	2 2 2
step01.6233.6233.2	2.2607	0.1905	1286.444	1286.415	1	1316.5	90.0%	1	R.IEEGTYGVVYR.A	2 2 2
step03.11073.11073.2	2.8853	0.3911	1278.307	1277.4513	1	504.8	85.0%	2	K.EKEGFPITSLR.E	2 2 2
step03.11126.11126.1	1.8581	0.2022	1278.523	1277.4513	1	135.9	65.0%	1	K.EKEGFPITSLR.E	1 1 1
step04.8982.8984.2	2.2975	0.4257	1135.168	1135.3014	1	614.1	83.3%	1	K.AQHPNIVTVR.E	2 2 2
step04.14192.14192.2	4.3203	0.4711	1637.553	1637.9241	1	1663.0	83.3%	2	K.IYIVMNYVEHDLK.S	2 2 2
step03.10828.10828.2	2.7358	0.374	1867.551	1868.2079	1	422.3	66.7%	2	K.SLMETMKQPFLPGEVK.T	2 2 2
step03.13800.13800.2	3.0071	0.2052	988.352	988.27313	1	749.3	92.9%	1	K.TLMIQLLR.G	2 2 2
step05.13698.13698.2	2.9829	0.1995	1366.933	1367.6191	1	780.1	66.7%	1	K.TSNLLLSHAGILK.V	2 2 2
step04.18257.18257.3	3.9436	0.4566	3176.996	3175.6362	1	768.3	26.9%	1	K.EYSTAVDMWSVGCIFGELLTQKPLFPGK.S	3 3
step04.17249.17249.3	3.9112	0.4876	3192.849	3191.6355	1	504.2	26.9%	1	K.EYSTAVDM*WSVGCIFGELLTQKPLFPGK.S	3 3
step05.12054.12054.2	4.476	0.5746	1637.702	1637.8444	1	1289.9	87.5%	1	K.KMTFSEHPYNNLR.K	2 2 2
step03.10629.10629.2	2.2358	0.0852	1509.471	1509.6714	1	380.1	63.6%	1	K.MTFSEHPYNNLR.K	2 2 2
step03.9080.9080.2	4.0069	0.5005	1525.591	1525.6708	1	504.1	77.3%	1	K.M*TFSEHPYNNLR.K	2 2 2
step04.14129.14129.2	4.8071	0.5185	1812.875	1813.0707	1	1803.7	80.0%	2	K.RFGALLSDQGFDLMNK.F	2 2 2
step02.12639.12639.2	2.6068	0.1104	1002.335	1001.1623	1	481.2	85.7%	1	K.FLTYFPGR.R	2 2 2
step03.10869.10869.2	3.4958	0.4081	1565.528	1565.7114	1	1191.4	79.2%	1	R.ISAEDGLKHEYFR.E	2 2 2

Similarities: gi|16332360|ref|NP_27(17:1)
gi|148763345|ref|NP_2(16:2)

gi|4506715|ref|NP_001

23.2%

7841

10.7

40S ribosomal protein S28 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13668.13668.2	2.3251	0.2722	1770.157	1770.9655	3	340.7	50.0%	1	K.GPVREGDVLTLLESER.E	2
*	step01.8954.8954.1	1.8527	0.3001	1360.646	1361.4803	1	338.6	68.2%	1	R.EGDVLTLLESER.E	1
*	step01.8940.8942.2	3.2088	0.3768	1361.224	1361.4803	1	1582.5	81.8%	1	R.EGDVLTLLESER.E	2

gi|300360505|ref|NP_0

23.1%

832

96036

5.0

importin-8 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.15418.15418.2	6.3654	0.5901	2346.016	2346.6719	1	1859.7	63.2%	2	R.VLQQAFNYLNQGVVHSITWK.Q	2 2
step06.15419.15419.3	4.0885	0.4791	2346.599	2346.6719	1	945.2	40.8%	3	R.VLQQAFNYLNQGVVHSITWK.Q	3 3
step03.15429.15429.3	5.5089	0.4342	2798.084	2798.1597	1	2140.4	39.6%	2	R.MKFDIFEDYASPTTAAQTLLYTAAK.K	3 3
step04.17398.17398.2	4.2538	0.4544	1649.168	1649.956	1	2595.7	83.3%	3	K.DGALHVIGSLAEILLK.K	2 2
step04.17400.17400.3	4.1884	0.3156	1649.975	1649.956	1	1379.5	48.3%	3	K.DGALHVIGSLAEILLK.K	3 3
step06.17378.17378.3	3.6398	0.1716	2761.794	2762.2217	1	1086.6	33.0%	1	K.DQMELFLQNHVFPLLLSNLGYLR.A	3 3
step05.17600.17600.3	4.8712	0.3664	2777.827	2778.2212	1	1233.0	34.1%	2	K.DQM*ELFLQNHVFPLLLSNLGYLR.A	3 3
step05.15077.15077.2	3.8637	0.4022	1436.768	1435.6455	1	1813.5	86.4%	6	R.SCWVLHAFSSLK.F	2 2
step03.15533.15533.3	4.6109	0.3078	3169.018	3168.6948	1	1090.9	31.2%	1	K.SLIEDKEMPVKVEAALALQSLISNQIQAK.E	3 3
step05.15700.15700.2	2.3349	0.3757	1350.132	1349.6705	1	485.3	75.0%	1	R.PIMQELLHIVR.E	2 2
step03.19457.19457.3	3.9458	0.3703	2972.332	2972.3767	1	790.9	31.0%	1	K.MICEYSQEVASIAVDMTQHLAEIFGK.V	3 3
step03.19061.19061.3	4.7076	0.4194	2988.555	2988.376	1	795.4	34.0%	1	K.M*ICEYSQEVASIAVDMTQHLAEIFGK.V	3 3
step02.17702.17702.2	5.2995	0.3448	1901.819	1901.2324	1	975.9	73.3%	6	R.GIDQCIPLFVQLVLER.L	2 2
step04.13575.13575.2	2.7874	0.2347	1687.799	1687.8813	1	315.7	57.7%	2	R.TALQEVYTLAEHRR.T	2 2

Similarities: gi|53759103|ref|NP_00(14:0)

gi|238859599|ref|NP_0

23.1%

225

25577

9.7

RNA-binding protein 34 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.5510.5510.3	4.6014	0.4166	2586.534	2586.7544	1	1217.4	42.9%	2	K.RNEEEESTSQIERPLSQEPAKK.V	3 3
step02.9605.9605.2	2.9934	0.3646	2429.648	2430.568	1	425.1	42.5%	1	R.NEEEESTSQIERPLSQEPAKK.V	2 2
step02.9597.9597.3	3.7461	0.3769	2430.848	2430.568	1	971.1	35.0%	1	R.NEEEESTSQIERPLSQEPAKK.V	3 3
step02.11771.11771.2	3.8783	0.4766	1771.517	1770.876	1	785.9	60.0%	2	R.ESALASADLEEEIHQK.Q	2 2
step04.11804.11804.2	3.2737	0.366	1577.622	1577.8434	1	736.5	65.4%	2	R.TVFVGNLPVTCNKK.K	2 2

Similarities: gi|238859597|ref|NP_0(5:0)

U	gi\|228008291\|ref\|NP_0	11	21	23.0%	623	69603	8.6	heterogeneous nuclear ribonucleoprotein Q isoform 1 [Homo sapiens]
U	gi\|228008400\|ref\|NP_0	11	21	25.4%	562	62656	7.6	heterogeneous nuclear ribonucleoprotein Q isoform 6 [Homo sapiens]
U	gi\|228008398\|ref\|NP_0	11	21	27.1%	527	58736	7.6	heterogeneous nuclear ribonucleoprotein Q isoform 3 [Homo sapiens]
U	gi\|228008295\|ref\|NP_0	11	21	24.3%	588	65682	8.6	heterogeneous nuclear ribonucleoprotein Q isoform 4 [Homo sapiens]
U	gi\|228008293\|ref\|NP_0	11	21	25.5%	561	62528	7.6	heterogeneous nuclear ribonucleoprotein Q isoform 5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.14915.14915.3	6.5595	0.6016	2443.908	2443.6946	1	2759.9	48.8%	2	K.VAEKLDEIYVAGLVAHSDLDER.A	3
	step02.14662.14662.2	3.6694	0.4202	2015.942	2016.1974	1	1818.5	70.6%	2	K.LDEIYVAGLVAHSDLDER.A	2
	step02.15960.15960.2	6.1521	0.6068	2335.245	2335.6409	1	2941.2	72.5%	1	R.AIEALKEFNEDGALAVLQQFK.D	2
	step02.15957.15957.3	4.312	0.3356	2336.463	2335.6409	1	1116.7	38.8%	2	R.AIEALKEFNEDGALAVLQQFK.D	3
	step01.10289.10289.2	2.9064	0.2212	1594.409	1594.7863	3	577.2	62.5%	1	R.DLFEDELVPLFEK.A	2 2
	step02.12792.12792.2	2.5902	0.2871	928.282	928.0697	1	638.3	85.7%	2	K.AGPIWDLR.L	2 2 2 2
2	step05.11776.11776.2	4.005	0.5719	1341.463	1340.5073	1	1373.2	90.9%	5	K.HIGVCISVANNR.L	2 2 2 2
	step02.12195.12195.2	3.8607	0.3403	1352.365	1352.515	1	1179.0	80.0%	2	K.TKEQILEEFSK.V	2 2
	step02.13138.13138.2	4.1805	0.4712	1943.707	1944.1312	1	1914.5	68.8%	1	K.VTEGLTDVILYHQPDDK.K	2 2
	step01.8889.8889.2	3.9848	0.4463	1474.525	1474.6385	1	1290.2	79.2%	2	R.NLANTVTEEILEK.A	2 2
	step02.13925.13925.3	4.5409	0.3524	2934.312	2934.2917	1	577.1	29.0%	1	K.AMEEMNGKDLEGENIEIVFAKPPDQK.R	3 3

Similarities: gi|228008396|ref|NP_0(7:4)
gi|156151392|ref|NP_0(2:9)
gi|156151394|ref|NP_0(2:9)

gi|15431293|ref|NP_00

23.0%

204

24146

11.6

60S ribosomal protein L15 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.12546.12546.2	2.3025	0.2162	1007.87	1008.1548	2	579.4	91.7%	1	K.YIQELWR.K	2
*	step01.7516.7516.2	4.3106	0.4242	1661.334	1661.7927	1	1542.8	80.8%	1	R.VLNSYWVGEDSTYK.F	2
*	step04.15524.15524.1	2.6839	0.2662	1504.98	1505.7839	1	410.4	63.6%	2	K.FFEVILIDPFHK.A	1
*	step05.16145.16145.2	4.118	0.3096	1506.595	1505.7839	1	1328.4	77.3%	7	K.FFEVILIDPFHK.A	2
*	step06.12454.12454.3	3.7032	0.3938	1721.177	1720.9562	1	1319.8	55.8%	2	R.RNPDTQWITKPVHK.H	3
*	step05.11486.11486.2	3.2415	0.3153	1564.536	1564.7698	1	393.7	54.2%	1	R.NPDTQWITKPVHK.H	2

gi|7705433|ref|NP_057

22.9%

564

66727

6.3

eukaryotic translation initiation factor 3 subunit L [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.12680.12680.2	2.4906	0.122	1097.348	1097.25	2	550.1	78.6%	2	K.NFIQYFHK.T	2
*	step05.13254.13254.1	1.9362	0.0981	1097.685	1097.25	5	236.6	71.4%	1	K.NFIQYFHK.T	1
*	step01.8579.8579.2	5.3721	0.4037	1788.644	1788.9346	1	2479.6	84.6%	1	K.VYEIQDIYENSWTK.L	2
*	step02.12375.12375.2	3.1713	0.2321	1266.478	1266.3822	1	1019.2	88.9%	2	K.KSEEEIDFLR.S	2
*	step03.16533.16533.2	3.8804	0.4671	1369.523	1369.7002	1	2069.5	90.9%	2	K.MLGYFSLVGLLR.L	2
*	step03.15869.15869.2	4.2673	0.3843	1385.872	1385.6996	1	2181.5	90.9%	4	K.M*LGYFSLVGLLR.L	2
*	step03.9762.9762.2	3.3825	0.2696	1200.545	1200.41	1	1008.6	83.3%	2	K.VLENIELNKK.S	2
*	step02.12000.12000.2	3.2057	0.4262	1223.946	1224.3917	1	1274.4	94.4%	2	R.IDESIHLQLR.E	2
*	step01.8726.8726.2	3.2283	0.515	1919.457	1920.0585	1	1771.5	66.7%	2	K.GDPQVYEELFSYSCPK.F	2
*	step06.13823.13823.2	4.1398	0.477	2140.788	2141.373	1	916.8	67.6%	2	K.FLSPVVPNYDNVHPNYHK.E	2
*	step01.6803.6803.2	4.1886	0.4177	1850.137	1850.0227	1	1898.3	66.7%	1	K.VFSDEVQQQAQLSTIR.S	2
*	step02.14132.14132.2	2.4816	0.116	861.236	861.1063	2	510.5	91.7%	3	R.IQLLVFK.H	2
*	step04.12858.12858.2	2.9367	0.2483	1074.105	1074.2164	1	842.1	100.0%	2	R.RYGDFFIR.Q	2

gi|7662645|ref|NP_054

22.9%

258

29396

9.4

28S ribosomal protein S18b, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.12795.12795.3	5.2202	0.5259	2462.548	2462.6501	1	1499.1	42.9%	2	K.APSEEDSLSSVPISPYKDEPWK.Y	3
*	step05.10343.10343.2	5.6104	0.5481	2282.738	2281.5337	1	1162.9	55.3%	1	R.RLYQGHLQEESGPPPESMPK.M	2
*	step03.7982.7982.2	5.4749	0.5682	2124.427	2125.3474	1	2465.3	69.4%	4	R.LYQGHLQEESGPPPESMPK.M	2
*	step03.8108.8108.3	3.5484	0.1741	2124.779	2125.3474	2	1000.9	40.3%	1	R.LYQGHLQEESGPPPESMPK.M	3
*	step03.5861.5861.3	4.4877	0.3451	2141.755	2141.3467	1	1591.7	48.6%	2	R.LYQGHLQEESGPPPESM*PK.M	3
*	step01.5298.5298.2	2.8394	0.5216	1603.457	1603.67	1	391.1	53.1%	1	R.TPAEASSTGQTGPQSAL.-	2

U	gi\|4506621\|ref\|NP_000	5	12	22.8%	145	17258	10.6	60S ribosomal protein L26 [Homo sapiens]
U	gi\|7705813\|ref\|NP_057	5	12	22.8%	145	17256	10.6	60S ribosomal protein L26-like 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.12668.12668.2	3.2393	0.3971	1342.709	1342.5486	1	850.9	80.0%	2	-.MKFNPFVTSDR.S	2
step05.12194.12194.2	3.1315	0.3059	1359.816	1358.548	1	901.2	75.0%	4	-.M*KFNPFVTSDR.S	2
step03.8696.8696.2	2.8822	0.2227	1673.699	1672.9316	1	586.3	57.7%	2	R.SMPIRKDDEVQVVR.G	2
step04.11849.11849.1	2.0361	0.1894	1083.759	1084.2927	2	369.1	78.6%	1	K.KYVIYIER.V	1
step02.11481.11481.2	2.996	0.3208	956.161	956.1198	1	592.7	100.0%	3	K.YVIYIER.V	2

gi|5454088|ref|NP_006

22.7%

251

28788

4.1

acidic leucine-rich nuclear phosphoprotein 32 family member B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16259.16259.3	3.5441	0.1329	2596.996	2597.03	1	1136.0	37.0%	1	R.IFGGLDMLAEKLPNLTHLNLSGNK.L	3
*	step06.13958.13958.2	4.2103	0.3398	1422.58	1421.627	1	1341.7	79.2%	2	K.LPNLTHLNLSGNK.L	2
2	step03.11008.11008.2	3.3751	0.3117	1258.604	1257.5015	1	1351.6	90.0%	2	K.LKDISTLEPLK.K	2 2 2 2
2	step04.11835.11835.2	3.9325	0.2328	1386.57	1385.6744	1	1449.0	81.8%	4	K.LKDISTLEPLKK.L	2 2 2 2
	step01.8926.8926.2	5.2594	0.5033	1974.204	1974.1108	1	1565.5	66.7%	2	K.SLDLFNCEVTNLNDYR.E	2 2
*	step02.15681.15681.3	3.528	0.283	2565.175	2564.7822	10	432.5	28.8%	1	K.SLDLFNCEVTNLNDYRESVFK.L	3

Similarities: gi|5453880|ref|NP_006(3:3)
gi|21071028|ref|NP_03(2:4)
gi|310110798|ref|XP_0(2:4)

U	gi\|215599015\|ref\|NP_0	8	16	22.6%	509	57033	9.5	H/ACA ribonucleoprotein complex subunit 4 isoform 2 [Homo sapiens]
U	gi\|4503337\|ref\|NP_001	8	16	22.4%	514	57674	9.4	H/ACA ribonucleoprotein complex subunit 4 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.14031.14031.3	5.8797	0.5531	2768.605	2768.0686	1	2219.0	43.5%	2	R.KSLPEEDVAEIQHAEEFLIKPESK.V	3
step06.12948.12948.2	4.5157	0.4115	1817.616	1817.0325	1	1224.7	76.7%	3	R.TTHYTPLACGSNPLKR.E	2
step05.14710.14710.2	5.6074	0.5267	2467.952	2468.7522	1	993.7	57.1%	2	R.TGFINLDKPSNPSSHEVVAWIR.R	2
step05.14699.14699.3	6.067	0.4565	2468.105	2468.7522	1	2734.3	47.6%	2	R.TGFINLDKPSNPSSHEVVAWIR.R	3
step03.8547.8547.2	3.0654	0.3904	1396.815	1396.5343	1	1338.2	83.3%	2	R.LHNAIEGGTQLSR.A	2
step05.15758.15760.3	4.3914	0.479	2111.433	2110.528	1	1092.9	38.2%	1	R.ALETLTGALFQRPPLIAAVK.R	3
step06.15728.15728.2	5.2239	0.5417	2111.888	2110.528	1	928.4	55.3%	3	R.ALETLTGALFQRPPLIAAVK.R	2
step03.5268.5268.2	4.6713	0.1069	2373.739	2373.3477	1	532.9	48.7%	1	R.KRES#ES#ESDETPPAAPQLIK.K	2

U	gi\|119395750\|ref\|NP_0	11	24	22.5%	644	66039	8.1	keratin, type II cytoskeletal 1 [Homo sapiens]
U	gi\|17318569\|ref\|NP_00	11	24	22.5%	644	66067	8.1	keratin 1; Keratin-1; cytokeratin 1; hair alpha protein [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step01.8271.8271.2	3.4968	0.4783	1384.688	1384.5188	1	1216.8	81.8%	2	K.SLNNQFASFIDK.V	2
step04.14146.14146.2	3.7395	0.4123	1639.588	1639.8367	1	899.3	73.1%	2	K.SLNNQFASFIDKVR.F	2
step01.6176.6176.2	3.525	0.3065	1476.448	1476.6593	1	1829.1	90.9%	1	R.FLEQQNQVLQTK.W	2 2 2
step01.8204.8204.2	3.857	0.2927	1476.321	1476.6162	1	2260.4	90.9%	2	K.WELLQQVDTSTR.T	2
step04.15351.15351.2	4.5641	0.4676	1994.261	1995.1831	1	1006.9	76.7%	6	R.THNLEPYFESFINNLR.R	2
step04.15347.15347.3	5.6245	0.4232	1996.111	1995.1831	1	1939.1	51.7%	3	R.THNLEPYFESFINNLR.R	3
step03.8951.8951.2	2.9142	0.3495	1394.725	1394.555	1	310.1	63.6%	2	R.TNAENEFVTIKK.D	2
step03.7636.7636.2	3.505	0.1681	1180.382	1180.2925	1	1773.3	94.4%	2	K.YEELQITAGR.H	2 2
step03.9388.9388.2	2.5033	0.2178	1303.644	1303.4471	1	558.9	75.0%	1	R.NSKIEISELNR.V	2
step03.14540.14540.3	5.3282	0.3588	2186.181	2185.3809	1	1660.4	50.0%	2	K.NKLNDLEDALQQAKEDLAR.L	3
step03.8344.8344.3	4.1263	0.5054	3312.948	3314.1824	1	673.7	22.4%	1	R.GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR.G	3

Similarities: gi|4557703|ref|NP_000(1:10)
gi|194018511|ref|NP_7(1:10)
gi|119703753|ref|NP_0(1:10)

gi|53759103|ref|NP_00

22.4%

1037

119938

5.2

importin-8 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.5843.5843.2	2.6129	0.4016	1380.669	1380.4852	1	464.1	63.6%	1	R.IAAENELNQSYK.I	2
*	step03.14445.14445.3	5.363	0.4495	3372.472	3371.6858	1	861.8	29.6%	1	K.NMVTQYWPDREPPPGEAIFPFNIHENDR.Q	3
	step06.15418.15418.2	6.3654	0.5901	2346.016	2346.6719	1	1859.7	63.2%	2	R.VLQQAFNYLNQGVVHSITWK.Q	2 2
	step06.15419.15419.3	4.0885	0.4791	2346.599	2346.6719	1	945.2	40.8%	3	R.VLQQAFNYLNQGVVHSITWK.Q	3 3
	step03.15429.15429.3	5.5089	0.4342	2798.084	2798.1597	1	2140.4	39.6%	2	R.MKFDIFEDYASPTTAAQTLLYTAAK.K	3 3
	step04.17398.17398.2	4.2538	0.4544	1649.168	1649.956	1	2595.7	83.3%	3	K.DGALHVIGSLAEILLK.K	2 2
	step04.17400.17400.3	4.1884	0.3156	1649.975	1649.956	1	1379.5	48.3%	3	K.DGALHVIGSLAEILLK.K	3 3
	step06.17378.17378.3	3.6398	0.1716	2761.794	2762.2217	1	1086.6	33.0%	1	K.DQMELFLQNHVFPLLLSNLGYLR.A	3 3
	step05.17600.17600.3	4.8712	0.3664	2777.827	2778.2212	1	1233.0	34.1%	2	K.DQM*ELFLQNHVFPLLLSNLGYLR.A	3 3
	step05.15077.15077.2	3.8637	0.4022	1436.768	1435.6455	1	1813.5	86.4%	6	R.SCWVLHAFSSLK.F	2 2
	step03.15533.15533.3	4.6109	0.3078	3169.018	3168.6948	1	1090.9	31.2%	1	K.SLIEDKEMPVKVEAALALQSLISNQIQAK.E	3 3
	step05.15700.15700.2	2.3349	0.3757	1350.132	1349.6705	1	485.3	75.0%	1	R.PIMQELLHIVR.E	2 2
	step03.19457.19457.3	3.9458	0.3703	2972.332	2972.3767	1	790.9	31.0%	1	K.MICEYSQEVASIAVDMTQHLAEIFGK.V	3 3
	step03.19061.19061.3	4.7076	0.4194	2988.555	2988.376	1	795.4	34.0%	1	K.M*ICEYSQEVASIAVDMTQHLAEIFGK.V	3 3
	step02.17702.17702.2	5.2995	0.3448	1901.819	1901.2324	1	975.9	73.3%	6	R.GIDQCIPLFVQLVLER.L	2 2
	step04.13575.13575.2	2.7874	0.2347	1687.799	1687.8813	1	315.7	57.7%	2	R.TALQEVYTLAEHRR.T	2 2

Similarities: gi|300360505|ref|NP_0(14:2)

gi|4503471|ref|NP_001

22.3%

462

50141

9.0

elongation factor 1-alpha 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.13096.13096.2	4.2804	0.4515	1590.274	1589.8208	1	2094.8	82.1%	2	K.THINIVVIGHVDSGK.S	2 2
*	step04.12062.12062.2	3.618	0.4142	1405.527	1405.5828	1	1251.9	81.8%	2	K.YYVTIIDAPGHR.D	2
	step04.13056.13056.2	2.6738	0.4183	1316.503	1315.5427	2	303.3	59.1%	3	R.EHALLAYTLGVK.Q	2 2
*	step06.15979.15979.3	4.0309	0.445	3150.666	3151.5542	1	640.9	27.7%	2	R.KDGNASGTTLLEALDCILPPTRPTDKPLR.L	3
*	step04.15443.15443.3	4.674	0.5542	3024.442	3023.3813	1	913.2	27.8%	2	K.DGNASGTTLLEALDCILPPTRPTDKPLR.L	3
	step02.9695.9695.2	2.2108	0.4253	1025.928	1026.2148	1	360.0	75.0%	1	K.IGGIGTVPVGR.V	2 2
*	step03.13551.13551.3	3.5542	0.2935	2516.203	2516.9817	1	1134.5	34.8%	1	R.VETGVLKPGMVVTFAPVNVTTEVK.S	3
*	step03.13556.13556.2	5.5302	0.5624	2517.06	2516.9817	1	754.8	54.3%	2	R.VETGVLKPGMVVTFAPVNVTTEVK.S	2

Similarities: gi|4503475|ref|NP_001(3:5)

U	gi\|62953129\|ref\|NP_00	6	14	22.3%	355	40410	8.8	macrophage erythroblast attacher isoform 2 [Homo sapiens]
U	gi\|62953131\|ref\|NP_00	6	14	19.9%	396	45287	8.7	macrophage erythroblast attacher isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step01.10782.10782.2	4.9645	0.6051	2146.549	2146.418	1	1600.1	65.0%	3	K.TLSGCPAVDSVVSLLDGVVEK.L	2
step04.12474.12474.2	3.2341	0.3869	1030.551	1029.3057	1	961.4	92.9%	1	R.MMVEHLLR.C	2
step02.14392.14392.2	3.2708	0.3815	1161.25	1161.3755	1	1144.8	93.8%	2	R.IQEFIELIR.Q	2
step04.4403.4403.2	3.1021	0.3856	1731.554	1731.8479	1	1089.4	75.0%	5	R.KHFSQAEGSQLDEVR.Q	2
step05.9353.9353.2	2.5568	0.2758	1582.326	1582.8036	1	445.0	57.7%	1	K.LAQPLPM*AHCANSR.L	2
step04.11052.11052.2	4.0549	0.4822	1451.617	1451.6084	1	1602.7	81.8%	2	R.TKEVFHFSQAEK.V	2

gi|66346685|ref|NP_05

22.0%

387

42427

8.4

plasminogen activator inhibitor 1 RNA-binding protein isoform 4 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step01.9532.9532.2	5.4439	0.4645	1944.625	1945.0713	1	3149.9	83.3%	2	R.FDQLFDDESDPFEVLK.A	2 2 2 2
step05.10153.10153.2	2.5832	0.3229	1350.572	1350.5886	1	601.0	70.8%	1	R.KNPLPPSVGVVDK.K	2 2 2 2
step06.12132.12132.2	2.8382	0.2229	1478.51	1478.7615	2	790.5	73.1%	4	R.KNPLPPSVGVVDKK.E	2 2 2 2
step04.9279.9279.2	2.4877	0.2648	1350.782	1350.5886	2	393.2	66.7%	2	K.NPLPPSVGVVDKK.E	2 2 2 2
step03.5842.5842.3	4.1952	0.1091	2194.291	2193.1936	1	676.6	45.1%	2	K.SKS#EEAHAEDSVMDHHFR.K	3 3 3 3
step03.6021.6021.3	4.7413	0.552	1898.439	1897.9631	1	1462.6	46.7%	2	K.SEEAHAEDSVMDHHFR.K	3 3 3 3
step03.13737.13737.2	5.1558	0.5759	2088.9	2089.2947	1	1996.8	77.8%	1	R.KPANDITSQLEINFGDLGR.P	2 2 2 2
step01.7577.7577.2	3.0696	0.3577	1761.129	1760.8364	1	1021.6	58.8%	2	K.SSASAPDVDDPEAFPALA.-	2 2 2 2

Similarities: gi|66346679|ref|NP_00(8:0)
gi|66346681|ref|NP_00(8:0)
gi|66346683|ref|NP_00(8:0)

gi|4506017|ref|NP_002

22.0%

309

35594

5.5

serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.8780.8780.2	4.1435	0.3547	1705.626	1705.8406	1	1779.2	83.3%	3	K.ELDQWIEQLNECK.Q	2
	step01.8616.8616.2	5.1617	0.5295	1793.72	1793.9347	1	1458.6	75.0%	2	K.SPDTNYLFMGDYVDR.G	2 2
	step03.14068.14068.3	3.8312	0.4996	2657.041	2656.848	1	633.6	31.2%	1	R.GAGYTFGQDISETFNHANGLTLVSR.A	3 3
	step04.12398.12398.2	5.8395	0.5619	1916.721	1917.091	1	2528.3	85.7%	2	R.AHQLVMEGYNWCHDR.N	2 2
	step04.11159.11159.2	4.2406	0.5302	1933.571	1933.0903	1	753.8	71.4%	1	R.AHQLVM*EGYNWCHDR.N	2 2

Similarities: gi|57222565|ref|NP_00(4:1)

U	gi\|38045913\|ref\|NP_93	3	6	22.0%	177	19654	5.6	nucleoside diphosphate kinase A isoform a [Homo sapiens]
U	gi\|4557797\|ref\|NP_000	3	6	25.7%	152	17149	6.2	nucleoside diphosphate kinase A isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.11446.11446.2	2.3886	0.1963	1346.626	1345.572	1	562.7	59.1%	2	R.TFIAIKPDGVQR.G	2 2 2
step04.13169.13169.2	2.7528	0.2382	1150.486	1150.3544	1	464.0	77.8%	2	K.DRPFFAGLVK.Y	2 2
step03.9124.9124.2	3.4662	0.3439	1786.74	1787.0315	1	376.9	56.2%	2	R.VMLGETNPADSKPGTIR.G	2 2 2

Similarities: gi|4505409|ref|NP_002(2:1)
gi|66392203|ref|NP_00(3:0)

gi|7669492|ref|NP_002

21.8%

335

36053

8.5

glyceraldehyde-3-phosphate dehydrogenase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.18801.18801.3	3.7712	0.1697	3310.811	3310.744	94	330.1	21.3%	1	K.VDIVAINDPFIDLNYMVYMFQYDSTHGK.F	3
*	step03.13318.13318.2	4.0375	0.4507	2214.403	2214.5938	1	656.0	52.5%	2	R.VIISAPSADAPMFVMGVNHEK.Y	2
*	step05.17090.17090.3	5.9318	0.5593	2598.264	2596.987	1	1585.0	46.7%	4	K.VIHDNFGIVEGLMTTVHAITATQK.T	3
*	step05.15835.15835.2	4.4887	0.5144	2613.336	2612.9863	1	469.9	43.5%	2	K.VIHDNFGIVEGLM*TTVHAITATQK.T	2
*	step05.15864.15864.3	6.5703	0.6187	2614.108	2612.9863	1	988.0	43.5%	2	K.VIHDNFGIVEGLM*TTVHAITATQK.T	3

gi|11968182|ref|NP_07

21.7%

152

17719

11.0

40S ribosomal protein S18 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.14196.14196.2	2.8311	0.3922	1076.43	1076.3568	1	932.8	83.3%	4	R.KIAFAITAIK.G	2
*	step01.15498.15498.2	2.5978	0.4131	1073.069	1072.307	1	512.3	81.2%	1	R.VITIMQNPR.Q	2
*	step02.14204.14204.2	2.9443	0.4373	1061.624	1061.2177	1	579.3	92.9%	2	K.IPDWFLNR.Q	2
*	step05.13055.13055.2	2.3164	0.21	816.258	815.9443	1	834.9	100.0%	2	R.HFWGLR.V	2

gi|228008396|ref|NP_0

21.6%

464

52046

9.2

heterogeneous nuclear ribonucleoprotein Q isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.10289.10289.2	2.9064	0.2212	1594.409	1594.7863	3	577.2	62.5%	1	R.DLFEDELVPLFEK.A	2 2
	step02.12792.12792.2	2.5902	0.2871	928.282	928.0697	1	638.3	85.7%	2	K.AGPIWDLR.L	2 2 2 2
2	step05.11776.11776.2	4.005	0.5719	1341.463	1340.5073	1	1373.2	90.9%	5	K.HIGVCISVANNR.L	2 2 2 2
	step02.12195.12195.2	3.8607	0.3403	1352.365	1352.515	1	1179.0	80.0%	2	K.TKEQILEEFSK.V	2 2
	step02.13138.13138.2	4.1805	0.4712	1943.707	1944.1312	1	1914.5	68.8%	1	K.VTEGLTDVILYHQPDDK.K	2 2
	step01.8889.8889.2	3.9848	0.4463	1474.525	1474.6385	1	1290.2	79.2%	2	R.NLANTVTEEILEK.A	2 2
	step02.13925.13925.3	4.5409	0.3524	2934.312	2934.2917	1	577.1	29.0%	1	K.AMEEMNGKDLEGENIEIVFAKPPDQK.R	3 3

Similarities: gi|228008291|ref|NP_0(7:0)
gi|156151392|ref|NP_0(2:5)
gi|156151394|ref|NP_0(2:5)

gi|310129365|ref|XP_0

21.5%

1092

121714

5.5

PREDICTED: DNA damage-binding protein 1-like isoform 4 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.13460.13460.2	4.2962	0.3732	1688.523	1688.0043	1	2352.2	82.1%	4	R.LEIYVVTAEGLRPVK.E	2 2 2 2
step05.14728.14728.2	3.0319	0.3723	1204.507	1204.5101	1	1301.8	83.3%	4	K.IAVMELFRPK.G	2 2 2 2
step04.12615.12615.2	2.4964	0.394	1220.494	1220.5095	1	383.3	83.3%	2	K.IAVM*ELFRPK.G	2 2 2 2
step03.14115.14115.2	2.2374	0.2072	1435.575	1435.6903	2	465.8	58.3%	1	K.GESKDLLFILTAK.Y	2 2 2 2
step03.13464.13464.2	3.6221	0.4647	1984.643	1984.2367	1	355.7	58.8%	2	R.IGRPSETGIIGIIDPECR.M	2 2
step03.13474.13474.3	4.6528	0.4613	1984.697	1984.2367	1	1634.9	50.0%	1	R.IGRPSETGIIGIIDPECR.M	3 3
step02.12324.12324.2	3.3589	0.4522	1195.824	1195.3903	1	920.0	83.3%	2	R.LEELHVIDVK.F	2 2
step02.13370.13370.2	2.7104	0.3255	1099.465	1099.3904	1	761.3	72.2%	2	K.YLAIAPPIIK.Q	2 2 2
step05.13541.13541.2	3.9637	0.4954	1771.797	1771.9983	1	1163.8	71.9%	1	R.NGIGIHEHASIDLPGIK.G	2 2 2
step04.13211.13211.2	3.8925	0.5658	1644.268	1644.8981	1	1512.8	83.3%	2	R.ALYYLQIHPQELR.Q	2 2 2 2
step05.11353.11353.2	3.5951	0.4448	1313.787	1313.5715	1	963.9	81.8%	2	K.KVTLGTQPTVLR.T	2 2 2 2
step05.13079.13079.2	4.4071	0.4507	2584.749	2585.8047	1	630.7	45.5%	4	R.SLSTTNVFACSDRPTVIYSSNHK.L	2 2 2 2
step05.13066.13066.3	4.7156	0.4288	2586.249	2585.8047	1	1211.3	39.8%	4	R.SLSTTNVFACSDRPTVIYSSNHK.L	3 3 3 3
step04.12808.12808.2	6.3572	0.5556	2062.651	2062.2993	1	2732.1	84.4%	2	R.KICYQEVSQCFGVLSSR.I	2 2 2 2
step02.10884.10886.3	7.2537	0.5983	2954.599	2954.1514	1	2720.0	38.8%	1	R.IEVQDTSGGTTALRPSASTQALSSSVSSSK.L	3 3 3 3
step04.13670.13670.2	3.8862	0.4032	1884.565	1885.1271	1	1314.2	75.0%	4	R.TECNHYNNIMALYLK.T	2 2 2 2
step03.14051.14051.2	4.6979	0.4069	1466.781	1465.7432	1	2073.9	87.5%	3	K.TKGDFILVGDLMR.S	2 2 2 2
step03.14138.14138.2	3.7741	0.5343	2180.762	2181.5403	1	319.5	41.7%	2	R.SVLLLAYKPMEGNFEEIAR.D	2 2 2 2
step03.14145.14145.3	3.6618	0.3604	2182.567	2181.5403	1	1468.3	43.1%	1	R.SVLLLAYKPMEGNFEEIAR.D	3 3 3 3

Similarities: gi|310129361|ref|XP_0(14:5)
gi|310129363|ref|XP_0(16:3)
gi|148529014|ref|NP_0(19:0)

gi|20070220|ref|NP_00

21.5%

637

72684

6.3

protein arginine N-methyltransferase 5 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.8848.8848.2	4.5591	0.346	1787.54	1786.9983	1	867.4	75.0%	1	R.DLNCVPEIADTLGAVAK.Q	2
	step03.14172.14172.2	2.2388	0.1974	1752.485	1752.0256	12	188.2	46.2%	1	K.QGFDFLCMPVFHPR.F	2 2
	step02.14060.14060.3	7.9281	0.5272	3370.849	3369.5916	1	2751.7	41.4%	3	R.VPLVAPEDLRDDIIENAPTTHTEEYSGEEK.T	3 3
	step06.15644.15644.2	2.8634	0.2867	1364.386	1364.5608	1	981.0	81.2%	1	K.TWMWWHNFR.T	2 2
	step06.15258.15258.2	2.8894	0.3287	1380.508	1380.5602	1	576.6	75.0%	2	K.TWM*WWHNFR.T	2 2
	step05.14414.14414.2	3.5396	0.3259	2003.099	2004.2761	1	1444.9	61.1%	1	R.IAVALEIGADLPSNHVIDR.W	2 2
	step02.9636.9636.2	2.9262	0.2588	927.298	927.08325	1	857.4	87.5%	2	R.GPLVNASLR.A	2 2
	step03.11796.11796.2	2.5788	0.2158	2109.528	2110.336	1	339.3	46.9%	1	R.EKDRDPEAQFEMPYVVR.L	2 2
	step03.11850.11850.3	3.5615	0.3454	2110.774	2110.336	1	1225.6	43.8%	1	R.EKDRDPEAQFEMPYVVR.L	3 3
	step03.6239.6239.2	2.3678	0.1472	2125.809	2126.3354	1	185.3	50.0%	1	R.EKDRDPEAQFEM*PYVVR.L	2 2
	step06.15254.15254.2	4.7438	0.5944	2543.1	2543.8574	1	1296.8	59.5%	2	K.KVWYEWAVTAPVCSAIHNPTGR.S	2 2
	step06.15223.15223.3	6.8816	0.643	2544.666	2543.8574	1	2297.8	42.9%	2	K.KVWYEWAVTAPVCSAIHNPTGR.S	3 3

Similarities: gi|88900507|ref|NP_00(11:1)

U	gi\|14165469\|ref\|NP_00	3	4	21.5%	130	14839	10.1	40S ribosomal protein S15a [Homo sapiens]
U	gi\|71772415\|ref\|NP_00	3	4	21.5%	130	14839	10.1	40S ribosomal protein S15a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step01.7098.7098.2	3.1102	0.2845	991.29	991.1875	1	1261.1	100.0%	1	R.M*NVLADALK.S	2
step02.12388.12388.2	3.363	0.2361	1236.546	1235.4113	1	1103.7	88.9%	2	R.FDVQLKDLEK.W	2
step01.15610.15610.2	2.8859	0.2282	1129.048	1128.2656	1	943.3	93.8%	1	K.WQNNLLPSR.Q	2

U	gi\|224451080\|ref\|NP_0	21	38	21.1%	1117	124602	5.7	cytospin-A [Homo sapiens]
U	gi\|224451082\|ref\|NP_0	21	38	21.1%	1117	124602	5.7	cytospin-A [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.8817.8817.3	3.8832	0.4793	1572.041	1572.812	1	1799.0	50.0%	2	K.KLPSAGQGANDMALAK.R	3
step04.8793.8793.2	3.9313	0.4722	1572.74	1572.812	1	886.6	80.0%	2	K.KLPSAGQGANDMALAK.R	2
step04.12278.12278.2	3.5374	0.3819	1224.136	1224.4348	1	1352.6	94.4%	2	K.TKDVEILHLR.N	2
step04.12242.12242.3	3.6324	0.1541	1224.864	1224.4348	1	1237.5	63.9%	1	K.TKDVEILHLR.N	3
step03.10286.10286.2	5.5809	0.543	1852.589	1852.9752	1	1822.0	79.4%	2	R.KGSSGNASEVSVACLTER.I	2
step03.13420.13420.3	4.4789	0.475	2321.894	2321.6328	1	1260.7	45.8%	1	K.VILMESLCQQSDKLEHFSR.Q	3
step03.13062.13064.2	5.0119	0.4716	2012.397	2013.1936	1	2427.9	71.9%	1	R.SLLDEHHISYVIDEDVK.S	2
step03.13056.13058.3	5.2542	0.3738	2013.705	2013.1936	1	1795.7	53.1%	3	R.SLLDEHHISYVIDEDVK.S	3
step03.11357.11357.2	4.0752	0.4726	1709.658	1708.9404	1	700.9	82.1%	2	R.EQLLGVQQHLSNTLK.M	2
step02.12436.12436.3	3.7723	0.3596	1907.524	1907.1594	1	1172.7	40.6%	1	K.MAEQDNKEAQEMIGALK.E	3
step02.12005.12005.2	3.1467	0.4359	1923.201	1923.1588	1	317.9	53.1%	1	K.M*AEQDNKEAQEMIGALK.E	2
step01.7464.7464.2	3.2159	0.5096	1180.365	1180.3324	1	955.5	80.0%	1	K.AALAATLEEYK.A	2
step03.14081.14081.2	4.3525	0.4758	2689.003	2689.9163	1	1561.0	52.2%	1	K.VAELYSIHNSGDKSDIQDLLESVR.L	2
step02.15107.15107.3	5.7441	0.5261	2691.103	2689.9163	1	2561.3	43.5%	2	K.VAELYSIHNSGDKSDIQDLLESVR.L	3
step02.13882.13882.2	4.2484	0.4685	1742.83	1742.869	1	1733.8	80.0%	1	K.AETLASSLQEDLAHTR.N	2
step02.11440.11440.2	3.375	0.1736	1463.658	1462.6943	2	1001.1	77.3%	2	K.KQIEDLNMTLEK.L	2
step02.14976.14976.3	3.8829	0.3922	1724.748	1724.9366	1	2390.5	51.8%	1	K.LHDNLIISDLENTVK.K	3
step02.7437.7437.2	3.3127	0.5137	1226.579	1226.431	1	1056.9	77.3%	4	K.TPPAAAVSPMQR.H	2
step05.12413.12413.2	5.7782	0.6234	1940.973	1940.1873	1	833.0	63.9%	4	R.HSISGPISTSKPLTALSDK.R	2
step05.13093.13093.2	3.8511	0.4761	1821.728	1822.0605	1	634.0	75.0%	2	K.RPNYGEIPVQEHLLR.T	2
step05.13118.13118.3	4.378	0.2838	1822.655	1822.0605	1	1751.5	55.4%	2	K.RPNYGEIPVQEHLLR.T	3

U	gi\|16905526\|ref\|NP_38	11	21	21.1%	398	45566	8.9	28S ribosomal protein S29, mitochondrial [Homo sapiens]
U	gi\|4758118\|ref\|NP_004	11	21	21.1%	398	45566	8.9	28S ribosomal protein S29, mitochondrial [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.14813.14813.2	3.6381	0.3149	1325.85	1325.6239	1	841.4	85.0%	2	R.KPALELLHYLK.N	2
step05.14226.14226.2	4.8166	0.5106	2188.184	2188.4727	1	1174.9	63.9%	1	K.REDKSPIAPEELALVHNLR.K	2
step05.14260.14260.3	5.0569	0.4081	2188.689	2188.4727	1	2175.7	48.6%	1	K.REDKSPIAPEELALVHNLR.K	3
step04.13546.13546.3	3.9866	0.3679	1660.799	1659.911	1	1137.3	57.1%	1	K.SPIAPEELALVHNLR.K	3
step04.13541.13541.2	4.7986	0.417	1660.854	1659.911	1	1312.7	78.6%	1	K.SPIAPEELALVHNLR.K	2
step06.14136.14136.2	3.9179	0.4515	1787.547	1788.084	1	1434.3	73.3%	2	K.SPIAPEELALVHNLRK.M	2
step06.15430.15430.2	6.8584	0.5992	2342.909	2342.5984	1	1326.9	69.0%	4	K.NDWHGGAIVSALSQTGSLFKPR.K	2
step06.15436.15436.3	5.4667	0.5137	2343.427	2342.5984	1	1145.7	41.7%	2	K.NDWHGGAIVSALSQTGSLFKPR.K	3
step04.12610.12610.2	3.1243	0.4605	1260.619	1260.5071	1	1288.3	90.0%	2	R.KAYLPQELLGK.E	2
step05.17078.17078.3	6.217	0.5281	3491.994	3492.019	1	818.6	31.7%	4	R.KAYLPQELLGKEGFDALDPFIPILVSNYNPK.E	3
step01.14723.14723.2	2.2105	0.0901	2250.148	2250.5344	8	212.2	31.6%	1	K.EGFDALDPFIPILVSNYNPK.E	2

gi|16554604|ref|NP_05

21.1%

190

21771

8.9

28S ribosomal protein S23, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.15807.15807.2	3.6136	0.5171	1993.872	1994.2799	1	748.0	70.0%	2	K.EKPLWFDVYDAFPPLR.E	2
*	step04.12720.12720.2	3.8745	0.5201	1742.796	1742.9155	1	1556.6	80.8%	1	K.AKAPIQDIWYHEDR.I	2
*	step02.12701.12701.2	3.9018	0.4632	1544.929	1543.6643	1	982.8	77.3%	2	K.APIQDIWYHEDR.I	2
*	step05.12384.12384.2	2.2229	0.0932	1446.533	1445.43	97	98.7	44.4%	1	R.FVEKY#T#ELQK.L	2

gi|9966805|ref|NP_065

21.0%

859

96332

9.1

ATP-dependent RNA helicase DDX24 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.16642.16642.2	4.23	0.5819	2357.137	2356.7913	1	764.3	47.7%	4	R.ALSFLGFSAPTPIQALTLAPAIR.D	2
*	step02.11795.11795.2	3.5819	0.3822	1475.79	1475.6266	1	1909.7	78.6%	1	R.DKLDILGAAETGSGK.T	2
*	step02.13782.13782.3	6.714	0.5396	3257.343	3256.4316	1	814.4	31.5%	2	R.SPGKAEAESDALPDDTVIESEALPSDIAAEAR.A	3
*	step05.9622.9622.2	3.6407	0.4589	1195.575	1195.3967	1	340.2	75.0%	6	R.RPEIVVATPGR.L	2
*	step03.15890.15890.2	5.8395	0.5801	2435.996	2435.6978	1	1527.3	60.0%	2	K.GHFAELSQLLEMLNDSQYNPK.R	2
*	step06.15158.15158.2	3.0058	0.4639	1908.067	1908.3151	1	480.9	53.3%	2	K.VLDIMPLTLHACMHQK.Q	2
*	step06.14892.14892.2	3.2235	0.3535	1924.578	1924.3146	1	552.6	56.7%	1	K.VLDIMPLTLHACM*HQK.Q	2
*	step03.15063.15063.2	3.749	0.4956	2290.974	2290.665	1	356.1	35.0%	1	R.ATNEGLSLMLIGPEDVINFKK.I	2
*	step05.18544.18544.3	5.379	0.4054	3326.01	3325.6438	1	1044.4	28.7%	3	R.NFQACLHNSWIEQAAAALEIELEEDMYK.G	3
*	step04.12567.12567.2	3.2883	0.4526	1529.783	1528.7343	1	1180.5	79.2%	1	R.HLLSQPLFTESQK.T	2

gi|21735415|ref|NP_00

21.0%

599

65171

4.6

major centromere autoantigen B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.6171.6171.2	3.2023	0.1896	1455.738	1455.5953	1	1622.5	81.8%	2	R.IIQEVEENPDLR.K	2
*	step06.15205.15205.2	4.0728	0.3927	1588.629	1587.888	1	1538.0	80.8%	7	R.RFNIPPSTLSTILK.N	2
*	step01.9024.9024.2	3.8358	0.5083	2140.158	2141.3037	1	2147.4	72.2%	1	R.IAEELGMDDFTASNGWLDR.F	2
*	step02.9202.9202.2	4.448	0.424	2213.605	2213.3496	1	864.0	56.5%	2	R.TPAAPASPAAVPSEGSGGSTTGWR.A	2
*	step04.13484.13484.3	3.9477	0.3478	2253.538	2253.618	1	677.8	34.5%	1	R.LSVLLCANADGSEKLPPLVAGK.S	3
*	step04.13485.13485.2	4.8794	0.4669	2253.862	2253.618	1	848.7	52.4%	5	R.LSVLLCANADGSEKLPPLVAGK.S	2
*	step03.9284.9284.1	2.2547	0.4112	794.621	795.0047	1	560.9	71.4%	2	K.LPPLVAGK.S	1
*	step01.5720.5720.2	3.2649	0.4593	1553.498	1553.6493	1	700.7	75.0%	2	R.AGQAGLPCDYTANSK.G	2
*	step06.13547.13547.2	3.1694	0.2351	898.512	898.1314	1	716.6	100.0%	2	R.RVLLLAGR.L	2
*	step01.6182.6182.2	4.0691	0.4306	1232.359	1232.369	1	1876.4	95.5%	2	R.LAAQSLDTSGLR.H	2

gi|186928850|ref|NP_0

21.0%

414

47611

6.2

28S ribosomal protein S27, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12113.12113.2	2.443	0.2636	1201.985	1201.4412	1	486.4	70.0%	1	R.KLPVSSLTISR.L	2
*	step03.13071.13071.3	3.8032	0.3348	2473.01	2472.6914	1	1393.0	39.5%	1	R.LIDNISSREEIDHAEYYLYK.F	3
*	step02.11750.11750.2	2.6119	0.1911	1573.625	1573.684	1	493.6	86.4%	2	R.EEIDHAEYYLYK.F	2
*	step06.14804.14804.2	2.303	0.1316	1227.527	1227.3989	1	513.6	81.2%	1	R.NWTIHTWIR.Q	2
*	step01.9166.9166.2	2.2728	0.3218	1127.924	1128.3438	1	845.7	75.0%	2	R.EALDVLGAVLK.A	2
*	step02.13685.13685.3	4.5486	0.4332	2562.12	2561.8264	1	1608.8	43.8%	2	K.LVEQLDIEETEQSKLPQYLER.F	3
*	step01.9604.9604.2	4.4458	0.5345	1632.742	1631.8927	1	1403.8	71.4%	4	K.IESEGLLSLTTQLVK.E	2

U	gi\|4503525\|ref\|NP_003	15	29	20.9%	913	105344	5.7	eukaryotic translation initiation factor 3 subunit C [Homo sapiens]
U	gi\|83700233\|ref\|NP_00	15	29	20.9%	913	105344	5.7	eukaryotic translation initiation factor 3 subunit C [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.13026.13026.2	3.5389	0.3307	1291.414	1291.4812	1	845.3	88.9%	2	K.RFEELTNLIR.T	2 2
step03.15903.15903.2	5.2362	0.4834	2294.604	2294.4993	1	1347.2	58.3%	3	R.ILADLEDYLNELWEDKEGK.K	2 2
step02.5028.5030.2	5.2108	0.4773	1992.31	1992.9481	1	1921.2	83.3%	1	K.RLDEEEEDNEGGEWER.V	2
step04.10258.10258.2	3.1423	0.1767	1085.486	1085.2822	1	1560.1	93.8%	1	K.KLNEILQAR.G	2 2
step03.18498.18498.3	5.0163	0.4907	2747.562	2748.2114	1	2004.4	39.0%	2	R.AAQIELLQLLVQIAAENNLGEGVIVK.I	3 3
step04.13373.13373.3	5.0106	0.3788	2996.042	2995.3833	1	1031.0	36.5%	2	R.DLMLMSHLQDNIQHADPPVQILYNR.T	3 3
step02.10734.10734.2	3.1936	0.4817	1497.648	1497.5955	1	895.4	69.2%	1	K.DAHNALLDIQSSGR.A	2 2
step05.14032.14032.2	4.2792	0.4339	1311.627	1311.5988	1	1471.8	86.4%	4	R.AKELLGQGLLLR.S	2 2
step04.13419.13419.3	4.233	0.184	1312.4	1311.5988	1	1826.7	59.1%	2	R.AKELLGQGLLLR.S	3 3
step03.10356.10356.2	2.6516	0.2657	1248.915	1249.3915	1	733.1	72.2%	2	K.TCHSFIINEK.M	2 2
step02.14631.14631.2	3.341	0.3343	1475.047	1475.6731	1	990.1	81.8%	3	K.VWDLFPEADKVR.T	2 2
step03.14033.14033.2	4.5623	0.564	2556.963	2557.996	1	1412.8	61.9%	1	K.MIINEELMASLDQPTQTVVMHR.T	2 2
step03.14012.14012.3	5.2958	0.4544	2558.546	2557.996	1	1271.0	44.0%	2	K.MIINEELMASLDQPTQTVVMHR.T	3 3
step03.13427.13427.3	3.8384	0.2913	2574.386	2573.9954	1	613.2	34.5%	1	K.M*IINEELMASLDQPTQTVVMHR.T	3 3 2
step01.7239.7239.2	3.8118	0.4715	1755.74	1755.9508	1	492.3	66.7%	2	R.TEPTAQQNLALQLAEK.L	2 2

Similarities: gi|153791492|ref|NP_0(14:1)

gi|5031753|ref|NP_005

20.9%

449

49229

6.3

heterogeneous nuclear ribonucleoprotein H [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.12434.12434.2	4.762	0.4742	2107.476	2108.2053	1	616.6	63.9%	2	R.EGRPSGEAFVELESEDEVK.L	2
	step03.5678.5678.2	3.7707	0.4627	1685.507	1685.7361	1	1010.4	83.3%	2	K.HTGPNSPDTANDGFVR.L	2 2
	step01.8793.8794.2	3.9055	0.418	1842.809	1842.9838	1	2292.8	68.8%	3	R.STGEAFVQFASQEIAEK.A	2 2
	step02.11201.11201.2	3.0683	0.5156	1602.622	1602.7039	1	1077.3	75.0%	2	R.DLNYCFSGMSDHR.Y	2 2
*	step04.9633.9633.2	4.0081	0.4778	2099.252	2099.2236	1	893.1	58.3%	3	R.YGDGGSTFQSTTGHCVHMR.G	2
	step03.8740.8740.2	2.8973	0.3827	1093.404	1093.2181	1	911.4	77.8%	1	R.VHIEIGPDGR.V	2 2 2

Similarities: gi|148470397|ref|NP_0(1:5)
gi|74099697|ref|NP_00(4:2)

gi|238859597|ref|NP_0

20.9%

430

48565

10.1

RNA-binding protein 34 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.5510.5510.3	4.6014	0.4166	2586.534	2586.7544	1	1217.4	42.9%	2	K.RNEEEESTSQIERPLSQEPAKK.V	3 3
	step02.9605.9605.2	2.9934	0.3646	2429.648	2430.568	1	425.1	42.5%	1	R.NEEEESTSQIERPLSQEPAKK.V	2 2
	step02.9597.9597.3	3.7461	0.3769	2430.848	2430.568	1	971.1	35.0%	1	R.NEEEESTSQIERPLSQEPAKK.V	3 3
	step02.11771.11771.2	3.8783	0.4766	1771.517	1770.876	1	785.9	60.0%	2	R.ESALASADLEEEIHQK.Q	2 2
	step04.11804.11804.2	3.2737	0.366	1577.622	1577.8434	1	736.5	65.4%	2	R.TVFVGNLPVTCNKK.K	2 2
*	step04.13776.13776.2	4.8309	0.5514	2252.916	2253.5432	1	1818.1	65.8%	3	K.NINAYVVFKEESAATQALKR.N	2
*	step05.14567.14567.3	4.3335	0.5407	2254.522	2253.5432	1	612.0	38.2%	3	K.NINAYVVFKEESAATQALKR.N	3
*	step03.12761.12761.2	3.8413	0.4972	2010.689	2010.276	1	847.8	58.8%	2	R.SVFVGNLPYKVEESAIEK.H	2

Similarities: gi|238859599|ref|NP_0(5:3)

gi|42558279|ref|NP_81

20.7%

444

49776

4.9

tubulin beta-8 chain isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.8104.8104.2	4.3273	0.4644	1603.457	1602.835	1	1180.5	82.1%	4	R.AVLVDLEPGTMDSVR.S	2 2 2 2 2
	step01.7456.7456.2	2.6574	0.0848	1618.233	1618.8344	1	576.7	64.3%	1	R.AVLVDLEPGTM*DSVR.S	2 2 2 2 2
2	step03.13604.13604.3	7.6194	0.4839	3442.817	3441.7993	1	4047.8	40.6%	4	R.KEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK.I	3 3 3 3 3 3 3
2	step02.14675.14675.2	3.7336	0.5747	3314.255	3313.6262	1	330.1	30.6%	4	K.EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK.I	2 2 2 2 2 2 2
2	step02.14655.14655.3	7.6733	0.6098	3314.864	3313.6262	1	2480.0	33.1%	4	K.EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK.I	3 3 3 3 3 3 3
	step02.10832.10832.1	2.1846	0.2528	1130.717	1131.2664	1	277.6	66.7%	1	R.FPGQLNADLR.K	1 1 1 1 1 1 1 1 1 1
	step02.11042.11042.2	3.013	0.4079	1131.393	1131.2664	1	848.0	94.4%	4	R.FPGQLNADLR.K	2 2 2 2 2 2 2 2 2 2
	step04.10136.10136.2	2.7872	0.382	1259.398	1259.4392	1	752.3	80.0%	7	R.FPGQLNADLRK.L	2 2 2 2 2 2 2 2 2 2
	step06.14200.14200.2	3.8338	0.4589	1272.57	1272.5878	1	1504.8	90.0%	2	R.KLAVNMVPFPR.L	2 2 2 2 2 2 2 2 2
	step06.13178.13180.2	3.0521	0.3533	1288.75	1288.5872	1	815.7	80.0%	1	R.KLAVNM*VPFPR.L	2 2 2 2 2 2 2 2 2
	step03.2450.2450.2	3.818	0.4577	1143.686	1144.4148	1	1048.0	94.4%	37	K.LAVNMVPFPR.L	2 2 2 2 2 2 2 2 2
	step03.12213.12213.1	2.111	0.3746	1143.734	1144.4148	8	261.9	61.1%	2	K.LAVNMVPFPR.L	1 1 1 1 1 1 1 1 1
	step03.10961.10961.2	2.9904	0.3932	1160.312	1160.4142	1	974.6	83.3%	2	K.LAVNM*VPFPR.L	2 2 2 2 2 2 2 2 2
	step03.16851.16851.2	3.2059	0.2969	1622.719	1621.9296	1	464.9	57.7%	2	R.LHFFMPGFAPLTSR.G	2 2 2 2 2 2 2 2
	step01.6096.6096.2	2.3159	0.269	1029.761	1029.1658	1	997.2	87.5%	3	K.TAVCDIPPR.G	2 2 2 2 2 2

gi|255918171|ref|NP_0

20.7%

372

41804

4.9

tubulin beta-8 chain isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step03.13604.13604.3	7.6194	0.4839	3442.817	3441.7993	1	4047.8	40.6%	4	R.KEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK.I	3 3 3 3 3 3 3
2	step02.14675.14675.2	3.7336	0.5747	3314.255	3313.6262	1	330.1	30.6%	4	K.EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK.I	2 2 2 2 2 2 2
2	step02.14655.14655.3	7.6733	0.6098	3314.864	3313.6262	1	2480.0	33.1%	4	K.EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK.I	3 3 3 3 3 3 3
	step02.10832.10832.1	2.1846	0.2528	1130.717	1131.2664	1	277.6	66.7%	1	R.FPGQLNADLR.K	1 1 1 1 1 1 1 1 1 1
	step02.11042.11042.2	3.013	0.4079	1131.393	1131.2664	1	848.0	94.4%	4	R.FPGQLNADLR.K	2 2 2 2 2 2 2 2 2 2
	step04.10136.10136.2	2.7872	0.382	1259.398	1259.4392	1	752.3	80.0%	7	R.FPGQLNADLRK.L	2 2 2 2 2 2 2 2 2 2
	step06.14200.14200.2	3.8338	0.4589	1272.57	1272.5878	1	1504.8	90.0%	2	R.KLAVNMVPFPR.L	2 2 2 2 2 2 2 2 2
	step06.13178.13180.2	3.0521	0.3533	1288.75	1288.5872	1	815.7	80.0%	1	R.KLAVNM*VPFPR.L	2 2 2 2 2 2 2 2 2
	step03.2450.2450.2	3.818	0.4577	1143.686	1144.4148	1	1048.0	94.4%	37	K.LAVNMVPFPR.L	2 2 2 2 2 2 2 2 2
	step03.12213.12213.1	2.111	0.3746	1143.734	1144.4148	8	261.9	61.1%	2	K.LAVNMVPFPR.L	1 1 1 1 1 1 1 1 1
	step03.10961.10961.2	2.9904	0.3932	1160.312	1160.4142	1	974.6	83.3%	2	K.LAVNM*VPFPR.L	2 2 2 2 2 2 2 2 2
	step03.16851.16851.2	3.2059	0.2969	1622.719	1621.9296	1	464.9	57.7%	2	R.LHFFMPGFAPLTSR.G	2 2 2 2 2 2 2 2
	step01.6096.6096.2	2.3159	0.269	1029.761	1029.1658	1	997.2	87.5%	3	K.TAVCDIPPR.G	2 2 2 2 2 2

U	gi\|183227678\|ref\|NP_0	2	5	20.6%	189	19891	6.8	protein DJ-1 [Homo sapiens]
U	gi\|31543380\|ref\|NP_00	2	5	20.6%	189	19891	6.8	protein DJ-1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.9876.9876.2	4.3125	0.5544	1659.497	1658.8749	1	691.3	60.0%	2	K.VTVAGLAGKDPVQCSR.D	2
	step06.16145.16145.2	4.9839	0.6292	2269.196	2268.6343	1	1505.6	52.3%	3	K.GLIAAICAGPTALLAHEIGFGSK.V	2

U	gi\|156151392\|ref\|NP_0	8	17	20.5%	532	59682	9.2	heterogeneous nuclear ribonucleoprotein R isoform 4 [Homo sapiens]
U	gi\|5031755\|ref\|NP_005	8	17	17.2%	633	70943	8.1	heterogeneous nuclear ribonucleoprotein R isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.12789.12789.3	4.5215	0.3693	2637.357	2636.9397	1	1328.9	37.0%	1	R.KYGGPPPDSVYSGVQPGIGTEVFVGK.I	3 3
	step02.12792.12792.2	2.5902	0.2871	928.282	928.0697	1	638.3	85.7%	2	K.AGPIWDLR.L	2 2 2 2
	step03.7887.7887.2	3.3953	0.2909	1338.545	1338.485	1	1110.2	75.0%	2	K.LCDSYEIRPGK.H	2 2
2	step05.11776.11776.2	4.005	0.5719	1341.463	1340.5073	1	1373.2	90.9%	5	K.HLGVCISVANNR.L	2 2 2 2
	step02.12953.12953.2	3.3777	0.3667	1338.727	1338.4883	1	1411.8	85.0%	2	K.TKENILEEFSK.V	2 2
	step02.14867.14867.2	5.6048	0.3867	1943.219	1942.1584	1	1623.6	65.6%	1	K.VTEGLVDVILYHQPDDK.K	2
	step02.12525.12525.2	3.0587	0.4831	1299.355	1299.3724	1	1106.8	83.3%	2	K.DYAFVHFEDR.G	2 2
	step03.10191.10191.2	3.5589	0.3964	1759.717	1759.855	1	630.9	61.5%	2	R.STAYEDYYYHPPPR.M	2 2

Similarities: gi|228008291|ref|NP_0(2:6)
gi|228008396|ref|NP_0(2:6)
gi|156151394|ref|NP_0(7:1)

U	gi\|4557705\|ref\|NP_000	9	15	20.4%	622	61987	5.2	keratin 9 [Homo sapiens]
U	gi\|55956899\|ref\|NP_00	9	15	20.4%	623	62064	5.2	keratin, type I cytoskeletal 9 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.16139.16139.3	5.0124	0.4491	2903.853	2904.134	1	682.8	34.4%	1	K.NYSPYYNTIDDLKDQIVDLTVGNNK.T	3
step02.16173.16173.2	4.2183	0.5023	2903.973	2904.134	1	836.5	43.8%	2	K.NYSPYYNTIDDLKDQIVDLTVGNNK.T	2
step03.13412.13412.2	6.3944	0.5417	1838.836	1839.0398	1	2750.9	86.7%	2	R.HGVQELEIELQSQLSK.K	2
step03.13404.13406.3	4.6256	0.315	1839.741	1839.0398	1	1272.6	45.0%	1	R.HGVQELEIELQSQLSK.K	3
step02.17199.17199.3	4.8429	0.5086	2738.847	2739.0488	1	956.5	33.0%	2	R.YCGQLQMIQEQISNLEAQITDVR.Q	3
step02.16708.16708.2	4.8758	0.4089	2754.731	2755.0483	1	963.9	50.0%	2	R.YCGQLQM*IQEQISNLEAQITDVR.Q	2
step02.16742.16742.3	4.3575	0.3909	2754.804	2755.0483	1	995.8	35.2%	1	R.YCGQLQM*IQEQISNLEAQITDVR.Q	3
step02.12754.12754.2	4.8639	0.5253	2511.794	2511.5964	1	1509.2	59.1%	2	K.EIETYHNLLEGGQEDFESSGAGK.I	2
step02.7466.7466.3	8.5577	0.6395	3224.379	3225.0872	1	2655.0	32.1%	2	R.GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK.S	3

gi|4504511|ref|NP_001

20.4%

397

44868

7.1

dnaJ homolog subfamily A member 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18244.18244.3	4.8325	0.5378	2324.94	2324.5374	1	1487.3	35.9%	2	K.EGGAGGGFGSPMDIFDMFFGGGGR.M	3
*	step02.17360.17360.3	5.467	0.3476	2340.35	2340.5369	1	2389.2	40.2%	2	K.EGGAGGGFGSPMDIFDM*FFGGGGR.M	3
*	step02.17325.17325.2	4.8768	0.1091	2340.422	2340.5369	1	873.6	45.7%	2	K.EGGAGGGFGSPM*DIFDMFFGGGGR.M	2
*	step02.16482.16482.2	5.255	0.6227	2356.916	2356.5364	1	952.8	43.5%	1	K.EGGAGGGFGSPMDIFDMFFGGGGR.M	2
*	step03.15785.15785.2	3.0819	0.0943	2129.9	2130.347	1	400.0	44.4%	1	K.NVVHQLSVTLEDLYNGATR.K	2
*	step03.15804.15804.3	4.6198	0.1342	2130.319	2130.347	1	1308.6	41.7%	4	K.NVVHQLSVTLEDLYNGATR.K	3
*	step06.13836.13836.3	6.0144	0.5717	2880.748	2881.2288	1	1060.5	37.5%	2	R.IHQIGPGMVQQIQSVCMECQGHGER.I	3
*	step06.13537.13537.3	4.3968	0.4235	2897.808	2897.228	1	493.5	27.1%	1	R.IHQIGPGMVQQIQSVCM*ECQGHGER.I	3
*	step06.11984.11984.3	4.8415	0.4601	2912.556	2913.2275	1	546.8	29.2%	2	R.IHQIGPGMVQQIQSVCMECQGHGER.I	3
*	step04.11246.11246.2	3.3177	0.4175	1393.563	1393.6566	1	1043.8	70.8%	3	R.TIVITSHPGQIVK.H	2

gi|16950603|ref|NP_06

20.4%

323

36844

8.2

28S ribosomal protein S35, mitochondrial isoform 1 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.13120.13120.3	6.5247	0.419	2942.52	2941.133	1	2186.1	41.3%	1	K.HCEALKDFCTEWPAALDSDEKCEK.H	3
*	step02.16580.16580.2	3.7356	0.4707	1203.658	1203.4773	1	1055.4	83.3%	2	R.NILETLLQMK.A	2
*	step02.11628.11628.2	4.0299	0.3874	1519.587	1519.746	1	1019.3	83.3%	2	K.NMEINKEELLGTK.E	2
*	step02.10902.10902.2	4.0583	0.4185	2199.65	2198.33	1	1080.9	52.8%	1	K.SVVSLKNEEENENSISQYK.E	2

gi|47174864|ref|NP_06

20.4%

235

25249

7.6

exosome complex exonuclease RRP46 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.12420.12422.2	2.6752	0.1859	1140.264	1140.401	2	1109.7	83.3%	1	K.ATLEVILRPK.I	2
*	step03.11400.11400.2	3.3765	0.5489	1567.869	1567.7655	1	1329.9	76.9%	1	R.NTCEAVVLGTLHPR.T	2
*	step03.14208.14208.3	3.7478	0.2121	2665.838	2665.893	1	1020.8	35.9%	1	K.GLYSDTELQQCLAAAQAASQHVFR.F	3

U	gi\|4758504\|ref\|NP_004	3	9	20.3%	261	26923	7.8	3-hydroxyacyl-CoA dehydrogenase type-2 isoform 1 [Homo sapiens]
U	gi\|83715985\|ref\|NP_00	3	9	21.0%	252	25984	7.2	3-hydroxyacyl-CoA dehydrogenase type-2 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.13815.13815.3	7.3127	0.5797	2861.803	2862.2217	1	3992.6	44.2%	2	K.KLGNNCVFAPADVTSEKDVQTALALAK.G	3
step03.17618.17618.2	5.801	0.5235	2879.579	2880.2468	1	1116.7	48.0%	2	R.LGDPAEYAHLVQAIIENPFLNGEVIR.L	2
step03.17570.17570.3	6.8359	0.4675	2880.508	2880.2468	1	1946.6	36.0%	5	R.LGDPAEYAHLVQAIIENPFLNGEVIR.L	3

gi|8923557|ref|NP_060

20.2%

228

26749

5.0

protein C20orf11 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.16076.16076.2	6.2671	0.6074	2447.057	2446.7449	1	1619.0	61.9%	2	K.GQIQEAIALINSLHPELLDTNR.Y	2
*	step03.16064.16064.3	5.7595	0.4872	2447.266	2446.7449	1	1241.0	34.5%	3	K.GQIQEAIALINSLHPELLDTNR.Y	3
*	step03.16568.16568.2	4.4372	0.5018	2689.283	2690.0244	1	563.8	43.5%	4	R.TLALLAFDSPEESPFGDLLHTMQR.Q	2
*	step04.16654.16654.3	4.4419	0.5732	2689.502	2690.0244	7	536.8	30.4%	4	R.TLALLAFDSPEESPFGDLLHTMQR.Q	3

gi|14141193|ref|NP_00

20.1%

194

22591

10.7

40S ribosomal protein S9 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13476.13476.2	3.7535	0.2776	1189.58	1189.3922	1	947.6	88.9%	2	R.RLFEGNALLR.R	2
*	step04.13906.13907.1	2.6516	0.1931	1194.288	1194.5121	1	532.8	66.7%	2	K.MKLDYILGLK.I	1
*	step05.14749.14749.2	3.0218	0.3293	1194.314	1194.5121	1	1317.7	88.9%	4	K.MKLDYILGLK.I	2
*	step04.12944.12944.2	2.8558	0.3833	1210.25	1210.5115	1	1242.9	88.9%	2	K.M*KLDYILGLK.I	2
*	step01.8427.8427.2	2.661	0.2945	935.131	935.142	1	687.8	92.9%	1	K.LDYILGLK.I	2
*	step01.7149.7149.2	2.421	0.3047	922.161	922.0171	1	491.0	91.7%	1	K.IEDFLER.R	2
*	step05.13894.13894.2	3.4229	0.2419	1400.095	1400.694	1	1084.1	81.8%	5	R.KQVVNIPSFIVR.L	2

U	gi\|148763345\|ref\|NP_2	16	21	20.0%	770	90045	5.3	cell division protein kinase 11A isoform 4 [Homo sapiens]
U	gi\|148763347\|ref\|NP_0	16	21	19.7%	780	91018	5.4	cell division protein kinase 11A isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step01.7158.7158.2	2.6869	0.1366	1089.527	1089.2213	3	468.7	75.0%	2	K.TLDEILQEK.K	2 2
step02.10979.10979.2	2.3112	0.2115	1536.665	1536.6716	5	431.9	62.5%	1	R.ENENHLLVVPESR.F	2 2 2
step01.6233.6233.2	2.2607	0.1905	1286.444	1286.415	1	1316.5	90.0%	1	R.IEEGTYGVVYR.A	2 2 2
step03.11073.11073.2	2.8853	0.3911	1278.307	1277.4513	1	504.8	85.0%	2	K.EKEGFPITSLR.E	2 2 2
step03.11126.11126.1	1.8581	0.2022	1278.523	1277.4513	1	135.9	65.0%	1	K.EKEGFPITSLR.E	1 1 1
step04.8982.8984.2	2.2975	0.4257	1135.168	1135.3014	1	614.1	83.3%	1	K.AQHPNIVTVR.E	2 2 2
step04.14192.14192.2	4.3203	0.4711	1637.553	1637.9241	1	1663.0	83.3%	2	K.IYIVMNYVEHDLK.S	2 2 2
step03.10828.10828.2	2.7358	0.374	1867.551	1868.2079	1	422.3	66.7%	2	K.SLMETMKQPFLPGEVK.T	2 2 2
step03.13800.13800.2	3.0071	0.2052	988.352	988.27313	1	749.3	92.9%	1	K.TLMIQLLR.G	2 2 2
step05.13698.13698.2	2.9829	0.1995	1366.933	1367.6191	1	780.1	66.7%	1	K.TSNLLLSHAGILK.V	2 2 2
step05.12054.12054.2	4.476	0.5746	1637.702	1637.8444	1	1289.9	87.5%	1	K.KMTFSEHPYNNLR.K	2 2 2
step03.10629.10629.2	2.2358	0.0852	1509.471	1509.6714	1	380.1	63.6%	1	K.MTFSEHPYNNLR.K	2 2 2
step03.9080.9080.2	4.0069	0.5005	1525.591	1525.6708	1	504.1	77.3%	1	K.M*TFSEHPYNNLR.K	2 2 2
step04.14129.14129.2	4.8071	0.5185	1812.875	1813.0707	1	1803.7	80.0%	2	K.RFGALLSDQGFDLMNK.F	2 2 2
step02.12639.12639.2	2.6068	0.1104	1002.335	1001.1623	1	481.2	85.7%	1	K.FLTYFPGR.R	2 2 2
step03.10869.10869.2	3.4958	0.4081	1565.528	1565.7114	1	1191.4	79.2%	1	R.ISAEDGLKHEYFR.E	2 2 2

Similarities: gi|16332360|ref|NP_27(15:1)
gi|16332358|ref|NP_27(16:0)

gi|5902034|ref|NP_008

20.0%

501

55828

4.8

periodic tryptophan protein 1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.5262.5262.2	2.7628	0.453	1787.805	1787.9928	1	239.4	57.1%	1	K.ETPDKVELSKEEVKR.L	2
*	step03.13794.13794.2	4.8128	0.4851	2410.607	2410.6665	1	1803.0	70.0%	1	K.VQTLQFHPFEAQTLISGSYDK.S	2
*	step03.13784.13784.3	4.4572	0.4488	2410.825	2410.6665	1	1094.4	40.0%	1	K.VQTLQFHPFEAQTLISGSYDK.S	3
*	step05.15426.15426.3	6.9151	0.5536	3071.107	3071.3003	1	3148.2	42.0%	2	R.VTWNHFSPCHFLASTDDGFVYNLDAR.S	3
*	step03.13349.13349.3	6.4606	0.5214	2743.762	2744.007	1	2180.1	42.7%	1	R.SDKPIFTLNAHNDEISGLDLSSQIK.G	3
*	step03.13367.13367.2	5.2497	0.5118	2743.985	2744.007	1	1166.3	54.2%	1	R.SDKPIFTLNAHNDEISGLDLSSQIK.G	2
*	step03.9234.9234.2	4.2887	0.4061	1412.58	1412.607	1	1500.1	79.2%	4	K.GCLVTASADKYVK.I	2

gi|186928854|ref|NP_0

20.0%

395

45319

9.3

28S ribosomal protein S31, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16391.16391.3	4.1243	0.4806	2625.809	2626.0015	1	931.6	36.5%	1	K.KRIEPLSPELVAAASAVADSLPFDK.Q	3
*	step03.16515.16515.2	2.9931	0.2466	2499.14	2497.8286	1	550.6	41.3%	1	K.RIEPLSPELVAAASAVADSLPFDK.Q	2
*	step02.12179.12179.2	5.2398	0.4545	1814.438	1813.904	1	2191.9	82.1%	2	K.SELLSQLQQHEEESR.A	2
*	step05.15484.15484.2	3.877	0.3997	1439.097	1439.7723	1	1416.9	86.4%	2	K.RLNIFDMMAVTK.E	2
*	step02.15665.15665.3	5.3287	0.537	3237.961	3237.435	1	821.5	36.5%	2	K.LWEFPINNEAGFDDDGSEFHEHIFLEK.H	3

gi|30795123|ref|NP_69

19.9%

598

67394

5.7

F-box/WD repeat-containing protein 8 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.9975.9975.2	4.3446	0.3661	1555.587	1555.7198	1	1377.0	87.5%	2	R.RWQEELAQAQAPK.K	2 2
*	step01.8314.8314.2	3.7962	0.2553	1542.685	1542.6761	1	1136.7	75.0%	3	R.EGAGGGEQLVDQLIR.D	2
	step02.12316.12316.3	5.1771	0.3968	2411.486	2411.5532	1	1970.7	51.3%	1	R.LCQQEGHLPDSSISDYSCWK.L	3 3
	step02.17282.17282.2	6.1659	0.6255	2368.684	2368.6294	1	2526.4	65.0%	3	R.INSSLAVAAYEDGFLNIWDLR.T	2 2
	step05.16238.16238.2	4.8366	0.4328	1851.955	1852.233	1	1892.4	78.1%	2	R.RYPVAVAAAGDLMYLLK.A	2 2
	step02.16902.16902.2	6.0262	0.5497	1696.861	1696.0468	1	2929.3	86.7%	3	R.YPVAVAAAGDLMYLLK.A	2 2
	step02.9761.9761.2	3.0654	0.3559	1277.436	1277.3252	1	887.5	80.0%	2	R.NADLDSFTTHR.R	2 2
	step03.14499.14499.2	4.1214	0.4706	2546.823	2547.7769	1	1529.7	52.4%	2	R.SSCDAMATHYYDLALAFPYNHV.-	2 2

Similarities: gi|30795121|ref|NP_03(7:1)

gi|4504257|ref|NP_003

19.8%

126

13906

10.3

histone H2B type 1-C/E/F/G/I [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.10002.10002.2	2.6205	0.4202	1266.874	1266.4238	1	565.3	83.3%	2	R.KESYSVYVYK.V	2 2
step02.16359.16359.2	4.1827	0.5462	1744.559	1745.0166	1	2276.9	78.6%	2	K.AMGIMNSFVNDIFER.I	2 2 2
step02.15192.15192.2	3.8368	0.1003	1760.532	1761.016	1	1447.9	67.9%	2	K.AMGIM*NSFVNDIFER.I	2 2 2
step02.14582.14582.2	4.867	0.557	1777.575	1777.0154	1	1741.0	75.0%	2	K.AMGIMNSFVNDIFER.I	2 2 2

Similarities: gi|10800140|ref|NP_06(3:1)
gi|10800138|ref|NP_06(4:0)

gi|115298657|ref|NP_0

19.8%

101

11471

6.8

protein S100-A7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18547.18547.3	4.5566	0.276	2314.351	2313.5906	1	1055.8	39.5%	1	K.KIDFSEFLSLLGDIATDYHK.Q	3
*	step03.18880.18880.3	3.761	0.4108	2185.795	2185.4177	1	652.7	43.1%	2	K.IDFSEFLSLLGDIATDYHK.Q	3

gi|38683855|ref|NP_06

19.7%

689

78550

6.4

pentatricopeptide repeat-containing protein 3, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.14267.14267.2	3.1794	0.4265	2427.775	2428.7817	1	564.2	52.6%	2	K.DIAEPHIPCLMPEYFEPQIK.D	2
*	step05.12209.12209.2	2.8073	0.4387	1159.318	1159.2815	1	806.4	83.3%	2	K.AGHQFGVTWR.A	2
*	step05.14334.14334.3	4.1064	0.4309	2257.406	2257.6123	1	707.5	38.2%	1	R.IFSLMPEKNEHSYCTMIR.G	3
*	step05.14300.14300.2	4.6539	0.513	2257.523	2257.6123	1	670.4	55.9%	2	R.IFSLMPEKNEHSYCTMIR.G	2
*	step05.13630.13630.2	3.2967	0.2129	1516.691	1516.8097	1	403.0	62.5%	2	K.VKPNLQTFNTILK.C	2
*	step06.14284.14284.2	4.4381	0.4456	1792.64	1792.0743	1	1128.9	76.7%	2	K.AIGIEPSLATYHHIIR.L	2
*	step03.10538.10538.2	2.8514	0.1923	1286.348	1286.4614	1	827.1	80.0%	2	R.LFDQPGDPLKR.S	2
*	step02.18596.18596.2	4.7665	0.4736	1761.972	1762.0839	1	1804.2	78.6%	2	R.SSFIIYDIMNELMGK.R	2
*	step05.18511.18511.2	4.7427	0.5707	1917.809	1918.2701	1	1450.8	73.3%	4	R.SSFIIYDIMNELMGKR.F	2
*	step02.14278.14278.2	3.4075	0.3559	1499.686	1499.7361	1	2337.9	87.5%	1	R.DLELAYQVHGLLK.T	2
*	step03.11969.11969.3	5.0168	0.4608	2127.606	2126.3484	1	1240.0	41.7%	2	R.DKHPPELQVAFADCAADIK.S	3

U	gi\|226246671\|ref\|NP_0	7	14	19.7%	142	16006	9.3	40S ribosomal protein S20 isoform 1 [Homo sapiens]
U	gi\|4506697\|ref\|NP_001	7	14	23.5%	119	13373	9.9	40S ribosomal protein S20 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.8529.8529.3	4.2354	0.3555	1650.348	1649.83	1	797.7	44.6%	3	K.DTGKTPVEPEVAIHR.I	3
step03.8232.8232.2	3.0052	0.3638	1650.349	1649.83	1	472.1	57.1%	2	K.DTGKTPVEPEVAIHR.I	2
step03.8522.8522.2	3.5692	0.3052	1248.471	1248.4132	1	1176.6	90.0%	2	K.TPVEPEVAIHR.I	2
step03.8470.8470.3	4.3252	0.28	1249.175	1248.4132	1	2314.5	67.5%	2	K.TPVEPEVAIHR.I	3
step05.13122.13122.2	3.1469	0.2206	1507.325	1507.7598	1	1381.8	83.3%	2	K.RLIDLHSPSEIVK.Q	2
step03.11162.11162.1	2.4639	0.2244	1350.902	1351.5734	1	313.6	54.5%	1	R.LIDLHSPSEIVK.Q	1
step03.11318.11318.2	3.6255	0.3604	1351.569	1351.5734	1	747.0	72.7%	2	R.LIDLHSPSEIVK.Q	2

gi|4507311|ref|NP_003

19.7%

117

13193

8.1

transcription elongation factor SPT4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12092.12092.2	4.0479	0.5004	1682.512	1681.9167	1	857.2	80.0%	3	R.VSNFKPGVYAVSVTGR.L	2
*	step03.8346.8348.1	1.8038	0.0889	782.558	782.95404	3	131.6	66.7%	1	R.LPQGIVR.E	1

U	gi\|238624257\|ref\|NP_0	6	9	19.6%	438	48598	9.0	insulin-like growth factor 2 mRNA-binding protein 1 isoform 2 [Homo sapiens]
U	gi\|56237027\|ref\|NP_00	6	9	14.9%	577	63481	9.2	insulin-like growth factor 2 mRNA-binding protein 1 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step01.8069.8069.2	5.1386	0.3406	1876.56	1877.0848	1	2733.8	84.4%	2	K.LYIGNLNESVTPADLEK.V	2
step02.12818.12818.2	4.9454	0.4374	1913.652	1914.0806	1	805.7	60.0%	1	K.SGYAFVDCPDEHWAMK.A	2
step01.9225.9225.2	2.5414	0.1474	1863.578	1864.0892	3	300.5	43.3%	1	K.ITISSLQDLTLYNPER.T	2
step01.8392.8392.2	3.5958	0.4532	1853.645	1854.0975	1	1194.2	65.6%	2	K.TVNELQNLTAAEVVVPR.D	2
step05.11155.11155.2	4.2381	0.3807	1539.369	1538.7559	1	1060.4	79.2%	2	K.IIGHFYASQM*AQR.K	2
step01.6237.6237.1	2.3411	0.1187	786.927	786.93945	56	438.6	75.0%	1	R.DILAQVK.Q	1

gi|30795121|ref|NP_03

19.5%

532

60705

5.6

F-box/WD repeat-containing protein 8 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.9975.9975.2	4.3446	0.3661	1555.587	1555.7198	1	1377.0	87.5%	2	R.RWQEELAQAQAPK.K	2 2
step02.12316.12316.3	5.1771	0.3968	2411.486	2411.5532	1	1970.7	51.3%	1	R.LCQQEGHLPDSSISDYSCWK.L	3 3
step02.17282.17282.2	6.1659	0.6255	2368.684	2368.6294	1	2526.4	65.0%	3	R.INSSLAVAAYEDGFLNIWDLR.T	2 2
step05.16238.16238.2	4.8366	0.4328	1851.955	1852.233	1	1892.4	78.1%	2	R.RYPVAVAAAGDLMYLLK.A	2 2
step02.16902.16902.2	6.0262	0.5497	1696.861	1696.0468	1	2929.3	86.7%	3	R.YPVAVAAAGDLMYLLK.A	2 2
step02.9761.9761.2	3.0654	0.3559	1277.436	1277.3252	1	887.5	80.0%	2	R.NADLDSFTTHR.R	2 2
step03.14499.14499.2	4.1214	0.4706	2546.823	2547.7769	1	1529.7	52.4%	2	R.SSCDAMATHYYDLALAFPYNHV.-	2 2

Similarities: gi|30795123|ref|NP_69(7:0)

gi|88900507|ref|NP_00

19.4%

620

71320

6.5

protein arginine N-methyltransferase 5 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.14172.14172.2	2.2388	0.1974	1752.485	1752.0256	12	188.2	46.2%	1	K.QGFDFLCMPVFHPR.F	2 2
step02.14060.14060.3	7.9281	0.5272	3370.849	3369.5916	1	2751.7	41.4%	3	R.VPLVAPEDLRDDIIENAPTTHTEEYSGEEK.T	3 3
step06.15644.15644.2	2.8634	0.2867	1364.386	1364.5608	1	981.0	81.2%	1	K.TWMWWHNFR.T	2 2
step06.15258.15258.2	2.8894	0.3287	1380.508	1380.5602	1	576.6	75.0%	2	K.TWM*WWHNFR.T	2 2
step05.14414.14414.2	3.5396	0.3259	2003.099	2004.2761	1	1444.9	61.1%	1	R.IAVALEIGADLPSNHVIDR.W	2 2
step02.9636.9636.2	2.9262	0.2588	927.298	927.08325	1	857.4	87.5%	2	R.GPLVNASLR.A	2 2
step03.11796.11796.2	2.5788	0.2158	2109.528	2110.336	1	339.3	46.9%	1	R.EKDRDPEAQFEMPYVVR.L	2 2
step03.11850.11850.3	3.5615	0.3454	2110.774	2110.336	1	1225.6	43.8%	1	R.EKDRDPEAQFEMPYVVR.L	3 3
step03.6239.6239.2	2.3678	0.1472	2125.809	2126.3354	1	185.3	50.0%	1	R.EKDRDPEAQFEM*PYVVR.L	2 2
step06.15254.15254.2	4.7438	0.5944	2543.1	2543.8574	1	1296.8	59.5%	2	K.KVWYEWAVTAPVCSAIHNPTGR.S	2 2
step06.15223.15223.3	6.8816	0.643	2544.666	2543.8574	1	2297.8	42.9%	2	K.KVWYEWAVTAPVCSAIHNPTGR.S	3 3

Similarities: gi|20070220|ref|NP_00(11:0)

gi|39930469|ref|NP_11

19.3%

306

35583

10.0

ribosome production factor 2 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13395.13395.2	3.9158	0.518	2060.709	2060.252	1	756.6	62.5%	1	K.NITRPFEDQTSLEFFSK.K	2
*	step04.19482.19482.2	3.2286	0.4763	2530.374	2530.944	1	1088.0	47.5%	1	R.MYDYHVLDMIELGIENFVSLK.D	2
*	step02.16181.16181.2	2.3337	0.1786	1011.438	1011.1986	1	754.8	85.7%	1	K.SLLIDFFR.G	2
*	step03.8932.8932.2	2.5468	0.36	1470.905	1469.5406	1	414.0	58.3%	1	K.NISHDTFGTTYGR.I	2

gi|4503509|ref|NP_003

19.2%

1382

166569

6.8

eukaryotic translation initiation factor 3 subunit A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.10598.10598.2	3.4945	0.4386	1334.43	1334.5046	1	1116.9	90.0%	2	R.LYHDIAQQAFK.F	2
*	step03.10649.10649.3	3.9979	0.3461	1335.083	1334.5046	1	1889.2	62.5%	1	R.LYHDIAQQAFK.F	3
*	step05.9900.9900.2	2.715	0.3297	1013.2	1013.19965	1	787.5	92.9%	1	R.MHLSQIQR.H	2
*	step05.12192.12192.3	5.5716	0.4315	2659.593	2659.837	1	2427.5	52.3%	2	R.HHNQSTAINLNNPESQSMHLETR.L	3
*	step02.13698.13698.2	4.2802	0.5408	1416.504	1416.6039	1	1618.1	83.3%	2	K.AVEDIHGLFSLSK.K	2
*	step06.13337.13337.2	3.9215	0.4696	1411.54	1411.5507	1	1445.6	79.2%	1	K.SGNALFHASTLHR.L	2
*	step02.14855.14855.2	2.417	0.3229	1524.262	1523.8422	1	472.4	53.8%	2	R.VLLATLSIPITPER.T	2
*	step03.12035.12035.2	2.3811	0.2007	1351.422	1351.6198	1	651.8	70.8%	1	R.LATLLGLQAPPTR.I	2
*	step01.11296.11296.2	2.3278	0.1627	1435.815	1435.692	1	1012.5	72.7%	1	R.FNVLQYVVPEVK.D	2
*	step02.13736.13736.3	5.9928	0.4606	2797.169	2796.0852	1	1531.5	45.5%	2	R.EQPEKEPELQQYVPQLQNNTILR.L	3
*	step01.15982.15982.2	2.9524	0.1506	1736.642	1736.0043	2	290.4	53.6%	2	R.LTSLVPFVDAFQLER.A	2
*	step01.7618.7618.2	3.1324	0.5577	1445.505	1445.559	1	1241.0	83.3%	2	R.TLSFGSDLNYATR.E	2
*	step02.11604.11604.2	2.9688	0.3772	2005.882	2006.2292	1	394.7	52.9%	2	R.EDAPIGPHLQSMPSEQIR.N	2
*	step03.8132.8132.2	3.2905	0.3953	2021.077	2022.2286	5	166.9	44.1%	2	R.EDAPIGPHLQSM*PSEQIR.N	2
*	step01.7722.7722.2	3.8866	0.4283	1263.252	1263.4896	1	1775.9	90.9%	2	R.NQLTAMSSVLAK.A	2
*	step05.13174.13174.2	3.6868	0.4006	1589.041	1589.9039	1	1081.0	69.2%	2	K.ALEVIKPAHILQEK.E	2
*	step02.15948.15948.2	5.5666	0.467	2468.751	2468.7612	1	1753.7	65.0%	2	K.AFKDIDIEDLEELDPDFIMAK.Q	2
*	step02.15938.15938.3	5.583	0.3044	2469.805	2468.7612	1	2594.8	47.5%	2	K.AFKDIDIEDLEELDPDFIMAK.Q	3
*	step01.9534.9534.2	4.9185	0.5977	2139.409	2138.3347	1	1739.7	73.5%	1	K.DIDIEDLEELDPDFIM*AK.Q	2
*	step03.11632.11632.2	2.9298	0.1511	1111.048	1111.3596	1	800.4	81.2%	1	K.RLEEIPLIK.S	2
*	step02.12056.12056.2	5.3745	0.5568	1850.436	1849.9998	1	2147.6	84.6%	2	R.IKDMDLWEQQEEER.I	2
*	step02.12057.12057.3	4.9065	0.4134	1850.492	1849.9998	1	2284.1	57.7%	2	R.IKDMDLWEQQEEER.I	3
*	step03.6280.6280.2	3.0879	0.3079	1184.878	1185.274	1	1423.4	88.9%	2	K.AREESWGPPR.E	2
*	step06.11610.11610.2	2.745	0.2822	992.874	993.18805	1	667.0	81.2%	2	R.RVPPPALSR.D	2

gi|16554616|ref|NP_11

19.2%

125

14227

9.3

28S ribosomal protein S6, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18635.18636.3	5.2779	0.4548	2661.2	2660.9849	1	1087.2	35.9%	5	R.GGYFLVDFYAPTAAVESMVEHLSR.D	3
*	step05.18634.18634.2	4.4986	0.6568	2661.916	2660.9849	1	838.1	52.2%	1	R.GGYFLVDFYAPTAAVESMVEHLSR.D	2

gi|153791492|ref|NP_0

914

105473

5.6

eukaryotic translation initiation factor 3 subunit C [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.13026.13026.2	3.5389	0.3307	1291.414	1291.4812	1	845.3	88.9%	2	K.RFEELTNLIR.T	2 2
step03.15903.15903.2	5.2362	0.4834	2294.604	2294.4993	1	1347.2	58.3%	3	R.ILADLEDYLNELWEDKEGK.K	2 2
step04.10258.10258.2	3.1423	0.1767	1085.486	1085.2822	1	1560.1	93.8%	1	K.KLNEILQAR.G	2 2
step03.18498.18498.3	5.0163	0.4907	2747.562	2748.2114	1	2004.4	39.0%	2	R.AAQIELLQLLVQIAAENNLGEGVIVK.I	3 3
step04.13373.13373.3	5.0106	0.3788	2996.042	2995.3833	1	1031.0	36.5%	2	R.DLMLMSHLQDNIQHADPPVQILYNR.T	3 3
step02.10734.10734.2	3.1936	0.4817	1497.648	1497.5955	1	895.4	69.2%	1	K.DAHNALLDIQSSGR.A	2 2
step05.14032.14032.2	4.2792	0.4339	1311.627	1311.5988	1	1471.8	86.4%	4	R.AKELLGQGLLLR.S	2 2
step04.13419.13419.3	4.233	0.184	1312.4	1311.5988	1	1826.7	59.1%	2	R.AKELLGQGLLLR.S	3 3
step03.10356.10356.2	2.6516	0.2657	1248.915	1249.3915	1	733.1	72.2%	2	K.TCHSFIINEK.M	2 2
step02.14631.14631.2	3.341	0.3343	1475.047	1475.6731	1	990.1	81.8%	3	K.VWDLFPEADKVR.T	2 2
step03.14033.14033.2	4.5623	0.564	2556.963	2557.996	1	1412.8	61.9%	1	K.MIINEELMASLDQPTQTVVMHR.T	2 2
step03.14012.14012.3	5.2958	0.4544	2558.546	2557.996	1	1271.0	44.0%	2	K.MIINEELMASLDQPTQTVVMHR.T	3 3
step03.13427.13427.3	3.8384	0.2913	2574.386	2573.9954	1	613.2	34.5%	1	K.M*IINEELMASLDQPTQTVVMHR.T	3 3 2
step01.7239.7239.2	3.8118	0.4715	1755.74	1755.9508	1	492.3	66.7%	2	R.TEPTAQQNLALQLAEK.L	2 2

Similarities: gi|4503525|ref|NP_003(14:0)

gi|39812378|ref|NP_00

729

77847

6.8

ran-binding protein 9 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.11292.11292.2	3.47	0.4248	1655.811	1655.8362	1	1327.2	76.9%	2	K.DKFSYIGLSQNNLR.V	2
	step06.14394.14394.2	3.1432	0.3596	1937.939	1938.2081	1	1035.4	62.5%	2	R.ATHPIPAACGIYYFEVK.I	2 2
	step04.12240.12240.2	3.8502	0.4726	1996.25	1997.2491	1	810.7	61.1%	2	K.GRDGYMGIGLSAQGVNMNR.L	2 2
*	step05.13429.13429.2	4.204	0.5456	2287.687	2287.5334	1	704.2	63.2%	2	K.M*VSSYLVHHGYCATAEAFAR.S	2
*	step01.9280.9280.2	3.1502	0.2951	1535.629	1534.6908	1	1072.3	65.4%	3	R.STDQTVLEELASIK.N	2
*	step03.10546.10546.2	5.1671	0.5829	2086.492	2087.186	1	1984.1	68.4%	1	K.GSTAHFSGFESCSNGVISNK.A	2
*	step03.12911.12911.2	3.1539	0.3618	2093.611	2094.348	1	640.2	63.9%	1	R.EPVCSALNSAILETHNLPK.Q	2
*	step01.9380.9380.2	3.1746	0.362	1727.591	1727.8462	1	1935.7	76.7%	2	R.SGIGSCAFATVEDYLH.-	2

Similarities: gi|40538736|ref|NP_06(2:6)

gi|5453603|ref|NP_006

535

57488

6.4

T-complex protein 1 subunit beta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.10684.10684.2	3.5327	0.33	1657.613	1657.7609	1	854.1	66.7%	2	R.EALLSSAVDHGSDEVK.F	2
*	step04.11681.11681.2	4.4563	0.5095	1799.583	1799.0422	1	738.8	83.3%	2	K.FRQDLM*NIAGTTLSSK.L	2
*	step06.13592.13592.2	3.6324	0.3317	1493.729	1493.7762	1	997.4	73.1%	2	R.LKGSGNLEAIHIIK.K	2
*	step01.9458.9458.2	3.2642	0.1752	1914.328	1914.1019	1	423.8	52.9%	2	K.LGGSLADSYLDEGFLLDK.K	2
*	step02.14993.14993.2	4.1486	0.4589	2041.864	2042.2748	1	1248.7	55.6%	1	K.LGGSLADSYLDEGFLLDKK.I	2
*	step02.11667.11667.2	3.2653	0.3904	1533.642	1533.8158	1	1457.0	80.8%	1	K.ILIANTGMDTDKIK.I	2
*	step05.11471.11471.2	2.9733	0.5646	1131.372	1131.2631	1	940.0	93.8%	2	K.HGINCFINR.Q	2
*	step04.14384.14384.2	5.3081	0.5304	1556.747	1555.7946	1	1720.5	84.6%	2	R.SLHDALCVLAQTVK.D	2

gi|47524167|ref|NP_99

8804

4.1

60S acidic ribosomal protein P1 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step01.8970.8970.2	3.1353	0.5539	1950.437	1950.9683	1	1056.2	59.4%	1	K.KEESEESDDDMGFGLFD.-	2 2 2
step01.8688.8688.2	3.2345	0.1938	2030.099	2030.9481	1	832.6	50.0%	1	K.KEESEES#DDDMGFGLFD.-	2 2 2
step01.8352.8354.2	4.4035	0.5996	2110.347	2110.928	1	861.4	53.1%	2	K.KEES#EES#DDDMGFGLFD.-	2 2 2
step01.7386.7386.2	4.4541	0.5039	2126.394	2126.9275	1	1138.8	62.5%	4	K.KEES#EES#DDDM*GFGLFD.-	2 2 2

Similarities: gi|4506671|ref|NP_000(4:0)
gi|4506669|ref|NP_000(4:0)

gi|7705612|ref|NP_057

19.0%

195

21452

8.2

3'-5' exoribonuclease CSL4 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15190.15190.2	5.0086	0.5681	1584.541	1584.8579	1	1579.6	80.8%	2	R.HGYIFSSLAGCLMK.S	2
*	step05.14299.14299.2	4.5422	0.5508	1600.732	1600.8573	1	1468.0	84.6%	2	R.HGYIFSSLAGCLM*K.S	2
*	step05.13842.13842.2	4.3928	0.4974	1357.523	1357.6893	1	1432.2	81.8%	2	K.VHILYVGSMPLK.N	2
*	step05.12769.12769.2	3.9058	0.5012	1373.726	1373.6887	1	2122.6	86.4%	2	K.VHILYVGSM*PLK.N	2
*	step04.12164.12164.2	3.009	0.292	1203.46	1203.4156	1	1250.2	80.0%	2	K.SFRPGDIVLAK.V	2

U	gi\|148470397\|ref\|NP_0	4	7	18.8%	415	45672	5.6	heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
U	gi\|4826760\|ref\|NP_004	4	7	18.8%	415	45672	5.6	heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
U	gi\|148470406\|ref\|NP_0	4	7	18.8%	415	45672	5.6	heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
U	gi\|148470404\|ref\|NP_0	4	7	18.8%	415	45672	5.6	heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
U	gi\|148470402\|ref\|NP_0	4	7	18.8%	415	45672	5.6	heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
U	gi\|148470400\|ref\|NP_0	4	7	18.8%	415	45672	5.6	heterogeneous nuclear ribonucleoprotein F [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step01.9467.9467.2	4.7517	0.4952	1869.526	1869.0643	1	2589.1	71.9%	1	K.ITGEAFVQFASQELAEK.A	2
step03.14464.14464.3	4.9352	0.4829	3476.97	3476.686	1	1485.5	30.6%	2	R.MRPGAYSTGYGGYEEYSGLSDGYGFTTDLFGR.D	3
step04.10330.10330.2	4.0636	0.4071	2213.597	2213.3667	1	877.4	52.8%	3	R.YGDSEFTVQSTTGHCVHMR.G	2
step03.8740.8740.2	2.8973	0.3827	1093.404	1093.2181	1	911.4	77.8%	1	R.VHIEIGPDGR.V	2 2 2

Similarities: gi|5031753|ref|NP_005(1:3)
gi|74099697|ref|NP_00(1:3)

U	gi\|205830451\|ref\|NP_0	3	3	18.8%	271	30037	5.5	catechol O-methyltransferase isoform MB-COMT [Homo sapiens]
U	gi\|6466450\|ref\|NP_009	3	3	23.1%	221	24449	5.3	catechol O-methyltransferase isoform S-COMT [Homo sapiens]
U	gi\|4502969\|ref\|NP_000	3	3	18.8%	271	30037	5.5	catechol O-methyltransferase isoform MB-COMT [Homo sapiens]
U	gi\|205830453\|ref\|NP_0	3	3	18.8%	271	30037	5.5	catechol O-methyltransferase isoform MB-COMT [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.14150.14150.3	6.8634	0.3705	3179.104	3179.48	1	1846.6	36.1%	1	R.ILNHVLQHAEPGNAQSVLEAIDTYCEQK.E	3
step06.15013.15013.3	5.3903	0.5011	2465.319	2464.8418	1	1776.0	43.2%	1	R.KGTVLLADNVICPGAPDFLAHVR.G	3
step04.14472.14472.2	4.2646	0.4837	2336.931	2336.6687	1	435.0	45.2%	1	K.GTVLLADNVICPGAPDFLAHVR.G	2

gi|34419635|ref|NP_00

18.5%

643

71028

6.1

heat shock 70 kDa protein 6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step01.5757.5757.2	3.6889	0.2971	1229.229	1229.3252	1	1555.9	90.0%	1	R.VEILANDQGNR.T	2 2 2 2 2 2 2
	step01.6542.6542.2	2.9268	0.5061	1488.301	1488.5806	1	775.6	79.2%	1	R.TTPSYVAFTDTER.L	2 2 2 2 2 2
*	step03.14535.14535.2	2.8468	0.1146	3264.331	3265.6877	19	162.4	23.2%	1	K.MKETAEAYLGQPVKHAVITVPAYFNDSQR.Q	2
	step01.9570.9570.3	4.0948	0.3017	1688.551	1688.906	1	2232.7	55.0%	2	R.IINEPTAAAIAYGLDR.R	3 3
	step01.9377.9377.2	5.8142	0.3738	1689.842	1688.906	1	1831.1	83.3%	18	R.IINEPTAAAIAYGLDR.R	2 2
	step02.6032.6032.2	3.7667	0.4341	1676.297	1676.6827	1	1076.7	73.3%	2	K.ATAGDTHLGGEDFDNR.L	2 2 2
	step03.13179.13179.2	3.599	0.3995	1543.751	1543.6992	1	1258.0	86.4%	2	R.ARFEELCSDLFR.S	2 2
	step03.13223.13223.1	2.0412	0.1312	1543.843	1543.6992	1	200.1	68.2%	2	R.ARFEELCSDLFR.S	1 1
	step01.8476.8476.2	3.3561	0.505	1316.326	1316.4347	1	1351.9	88.9%	2	R.FEELCSDLFR.S	2 2
	step01.8390.8390.2	3.1065	0.3959	1082.316	1082.2336	1	727.7	87.5%	6	K.LLQDFFNGK.E	2 2 2 2
	step02.13808.13808.2	4.57	0.2893	1567.206	1566.7825	1	1740.0	83.3%	3	K.LLQDFFNGKELNK.S	2 2 2 2
	step03.6900.6900.2	2.3231	0.3762	1017.931	1018.14954	2	570.2	68.8%	2	K.ITITNDKGR.L	2 2 2 2 2

gi|6912478|ref|NP_036

18.5%

536

60030

5.0

importin subunit alpha-7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step04.8004.8004.2	2.3688	0.143	1359.323	1358.526	13	214.5	50.0%	1	R.EEEGIQLRKQK.R	2 2 2
	step04.12249.12249.2	2.261	0.1382	939.509	939.1356	1	514.6	91.7%	1	R.FVEFLKR.N	2 2
*	step02.18234.18234.2	2.5024	0.3678	2989.321	2989.2292	1	554.8	30.8%	1	R.LLFSSDSDLLADACWALSYLSDGPNEK.I	2
	step05.13998.13998.2	2.4138	0.2387	1531.078	1531.8048	1	526.8	63.6%	2	R.RLVELLMHNDYK.V	2 2 2
	step03.18827.18827.3	5.997	0.4607	2337.53	2337.7864	1	2807.5	47.5%	4	R.AQIQAVIDANIFPVLIEILQK.A	3 3
	step03.18858.18858.2	6.1794	0.5798	2338.002	2337.7864	1	1341.3	62.5%	4	R.AQIQAVIDANIFPVLIEILQK.A	2 2
*	step04.16780.16780.2	4.6076	0.4608	2426.656	2426.8853	1	1368.0	57.5%	4	R.YLVSLGCIKPLCDLLTVMDSK.I	2
*	step04.16769.16769.3	4.1748	0.3543	2426.819	2426.8853	1	1219.3	40.0%	1	R.YLVSLGCIKPLCDLLTVMDSK.I	3

Similarities: gi|222144293|ref|NP_0(3:5)
gi|39812229|ref|NP_00(4:4)

gi|310115365|ref|XP_0

18.5%

492

53673

6.5

PREDICTED: protein FAM115A-like [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.13690.13690.2	3.1635	0.2933	1100.568	1100.3385	1	837.8	88.9%	2	K.LGPFLLNAVR.W	2 2
step05.16836.16836.2	4.4849	0.4752	2688.056	2688.0762	1	955.2	47.9%	3	R.FPGNLLLNPFGISITSQSLNPGPFR.T	2 2
step05.16841.16841.3	4.0324	0.461	2688.11	2688.0762	9	473.3	28.1%	1	R.FPGNLLLNPFGISITSQSLNPGPFR.T	3 3
step03.14747.14747.3	5.5351	0.5304	2583.326	2583.9468	1	1608.5	43.5%	2	K.LGPDGAAFLQIPAEEIPAYMSVHR.L	3 3
step03.14763.14763.2	5.2307	0.5609	2584.804	2583.9468	1	738.1	52.2%	4	K.LGPDGAAFLQIPAEEIPAYMSVHR.L	2 2
step05.10309.10309.2	2.2146	0.1379	976.303	976.1575	1	685.2	78.6%	1	R.YRLPVATR.E	2 2
step01.8766.8766.2	3.7179	0.2815	1318.925	1318.527	1	1742.5	85.0%	1	R.LWDEVMQAVAR.L	2 2
step06.14332.14332.2	2.2011	0.1948	1495.71	1494.7659	13	198.5	54.2%	1	R.LGAEPFPLRLPQR.I	2 2

Similarities: gi|7662276|ref|NP_055(8:0)

gi|55741849|ref|NP_00

18.4%

942

103963

5.8

DDB1- and CUL4-associated factor 5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.14430.14430.3	5.3801	0.5272	3293.236	3292.5168	1	858.2	30.2%	1	K.DLLGHFGCVNAIEFSNNGGQWLVSGGDDRR.V	3
*	step06.13846.13846.2	3.6602	0.4287	1636.528	1636.9027	1	927.5	83.3%	2	R.VLLWHM*EQAIHSR.V	2
*	step05.14088.14088.2	6.3027	0.559	2035.504	2034.1713	1	1659.3	73.5%	4	K.GEHHSNIFCLAFNSGNTK.V	2
*	step02.14358.14358.2	2.6114	0.2238	915.544	915.1141	1	597.1	91.7%	2	R.VLIWDIR.E	2
*	step05.15388.15388.3	4.7617	0.4698	3217.997	3218.5398	1	802.3	30.6%	2	R.ESPHGEPFCLANYPSAFHSVMFNPVEPR.L	3
*	step05.13188.13188.2	3.13	0.5095	1310.578	1310.5261	1	873.8	80.0%	2	R.LPPVLYDIHSR.L	2
*	step04.11739.11739.2	5.2356	0.5809	1771.452	1770.9808	1	1268.5	85.7%	1	R.FNPHTYMICSSGVEK.I	2
*	step03.11020.11020.3	5.397	0.4729	2998.819	2998.2458	1	1416.5	34.0%	2	R.EDKPSAPIKPTNTYIGEDNYDYPQIK.V	3
*	step04.8574.8574.2	2.9659	0.0964	1319.598	1319.2952	1	738.7	66.7%	2	R.Y#SYISYSNNK.D	2
*	step02.11532.11532.3	3.7906	0.3998	2756.617	2756.83	3	712.7	26.0%	1	R.YSYISYSNNKDGETSLVTGEADEGR.A	3

gi|66392203|ref|NP_00

18.4%

267

30137

8.9

nucleoside diphosphate kinase B [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.11446.11446.2	2.3886	0.1963	1346.626	1345.572	1	562.7	59.1%	4	R.TFIAIKPDGVQR.G	2 2 2
step04.13169.13169.2	2.7528	0.2382	1150.486	1150.3544	1	464.0	77.8%	2	K.DRPFFAGLVK.Y	2 2
step03.9124.9124.2	3.4662	0.3439	1786.74	1787.0315	1	376.9	56.2%	4	R.VMLGETNPADSKPGTIR.G	2 2 2
step05.13657.13657.2	2.9739	0.3337	1176.811	1176.3918	1	507.6	72.2%	2	K.DRPFFPGLVK.Y	2 2

Similarities: gi|4505409|ref|NP_002(3:1)
gi|38045913|ref|NP_93(3:1)

gi|70980549|ref|NP_05

18.3%

1871

208699

8.9

protein RRP5 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.16727.16727.3	4.9838	0.4215	3246.52	3246.7688	1	580.7	29.6%	4	K.LNEQVTQEQPLKDLLHLPELFSPGMLVR.C	3
*	step05.11086.11086.2	2.7643	0.2641	1126.469	1126.3213	1	1332.3	93.8%	1	R.ACILCVHPR.T	2
*	step01.11022.11022.2	2.8605	0.1576	2209.032	2208.4927	16	269.9	34.2%	1	R.LSCQNLGAVLDDVPVQGFFK.K	2
*	step06.13578.13578.2	4.0391	0.3719	1702.06	1700.8785	1	573.5	64.3%	2	K.NVFNPEAFKPGNTHK.C	2
*	step03.7692.7692.2	2.3936	0.1995	1228.648	1228.3788	2	752.0	75.0%	2	R.YHDIEPGAVVK.G	2
*	step06.15634.15634.2	2.7368	0.3289	1535.623	1535.9431	1	342.8	73.1%	2	R.GLVPPMHLADILMK.N	2
*	step02.10750.10750.2	2.5344	0.3266	1585.82	1586.6843	1	592.3	70.8%	1	K.HELSTEYIPDPER.V	2
*	step03.7938.7938.2	2.9274	0.3683	1430.813	1430.6256	1	721.3	68.2%	2	K.VVVLNCEPSKER.M	2
*	step05.12979.12979.2	3.8226	0.3239	1662.531	1662.9149	1	1536.3	78.6%	1	K.TKDGLEVAVLPHNIR.A	2
*	step03.8457.8457.2	3.8737	0.3614	1526.479	1526.7167	1	1038.7	82.1%	2	R.KPALVSTVEGGQDPK.N	2
*	step06.15990.15990.2	4.8825	0.4669	1802.923	1803.1605	1	1314.4	76.7%	2	K.NFSEIHPGMLLIGFVK.S	2
*	step06.15422.15422.2	3.098	0.2755	1817.882	1819.1599	1	452.8	56.7%	1	K.NFSEIHPGM*LLIGFVK.S	2
*	step05.15520.15520.2	5.8662	0.5431	2225.807	2225.5713	1	2401.4	70.0%	2	K.SIKDYGVFIQFPSGLSGLAPK.A	2
*	step05.15523.15523.3	5.5093	0.4375	2226.8	2225.5713	1	1921.5	43.8%	2	K.SIKDYGVFIQFPSGLSGLAPK.A	3
*	step03.12610.12610.3	3.5197	0.2168	3068.319	3067.189	94	358.1	16.8%	1	K.S#FAIASLVETGHLAAFS#LTSHLNDTFR.F	3
*	step03.15165.15165.2	3.4818	0.3421	1233.782	1232.5367	1	1610.2	90.0%	2	R.IPLLLTSLSFK.V	2
*	step05.14399.14399.2	3.0607	0.3817	2428.318	2428.7847	1	304.5	47.6%	1	K.TLLCLSLTGPHKLEEGEVAM*GR.V	2
*	step05.14407.14407.3	5.8227	0.5071	2429.119	2428.7847	1	1796.3	40.5%	1	K.TLLCLSLTGPHKLEEGEVAM*GR.V	3
*	step02.10991.10991.2	3.9182	0.3817	1715.754	1715.8834	1	815.8	71.4%	1	K.SKVEDPEINSIQDIK.E	2
*	step05.13696.13696.2	3.3769	0.3977	1564.866	1564.7715	1	1356.6	76.9%	2	R.GYVGSIQPHGVFFR.L	2
*	step02.15639.15639.3	5.6075	0.5603	2930.829	2930.2993	1	1220.8	35.2%	2	K.NLVELSFLPGDTGKPDVLSASLEGQLTK.Q	3
*	step02.12815.12815.2	3.0657	0.2676	1959.424	1960.0875	1	433.2	56.2%	1	K.KAGLSEEDDSLVDVYYR.E	2
*	step06.16588.16588.2	3.8503	0.4292	2334.936	2333.7131	1	771.6	47.4%	1	R.AVQYNEPLKVFLHLADIYAK.S	2
*	step04.13697.13697.2	3.9513	0.4905	1291.637	1290.5349	1	2221.5	90.0%	2	K.VFLHLADIYAK.S	2

U	gi\|83641874\|ref\|NP_11	11	20	18.3%	476	54164	5.6	probable serine carboxypeptidase CPVL precursor [Homo sapiens]
U	gi\|83641876\|ref\|NP_06	11	20	18.3%	476	54164	5.6	probable serine carboxypeptidase CPVL precursor [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.19440.19440.2	2.7711	0.206	2123.195	2123.4343	1	612.1	53.1%	2	R.DLYSALIQFFQIFPEYK.N	2
step02.19442.19442.3	4.7419	0.4952	2123.712	2123.4343	1	2366.0	53.1%	2	R.DLYSALIQFFQIFPEYK.N	3
step02.9738.9738.2	2.979	0.4469	1565.263	1565.622	1	996.8	76.9%	2	K.NNDFYVTGESYAGK.Y	2
step03.15124.15125.2	4.7132	0.4262	1668.662	1668.8733	1	1576.4	79.2%	3	R.KQNWFEAFEILDK.L	2
step03.15161.15161.3	3.7608	0.4756	1669.531	1668.8733	1	1451.0	54.2%	1	R.KQNWFEAFEILDK.L	3
step02.12969.12969.2	2.2792	0.2727	961.295	961.1396	1	485.6	85.7%	1	K.FLSLPEVR.Q	2
step04.15084.15084.2	4.7237	0.568	2728.108	2729.1038	1	1142.7	59.5%	2	K.YLREDTVQSVKPWLTEIMNNYK.V	2
step04.15070.15070.3	5.7244	0.486	2728.324	2729.1038	1	1299.6	45.2%	2	K.YLREDTVQSVKPWLTEIMNNYK.V	3
step02.15568.15568.3	4.036	0.3265	2296.648	2296.5852	15	643.4	31.9%	1	R.EDTVQSVKPWLTEIMNNYK.V	3
step04.11876.11876.2	3.2039	0.3522	1423.597	1423.6013	1	1013.4	66.7%	2	R.GGGHILPYDQPLR.A	2
step04.11871.11871.3	3.9266	0.275	1424.334	1423.6013	1	1435.0	54.2%	2	R.GGGHILPYDQPLR.A	3

gi|112293285|ref|NP_0

18.3%

262

29601

7.0

spindlin-1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13366.13366.2	3.235	0.202	2093.211	2094.217	1	724.9	56.2%	1	K.YDGFDCVYGLELNKDER.V	2
*	step02.11211.11211.2	3.9747	0.5474	1373.379	1372.573	1	2145.8	83.3%	2	R.ISDAHLADTMIGK.A	2
	step05.13667.13667.2	4.8704	0.4876	2047.541	2048.4373	1	1653.1	61.8%	2	R.TGMVIHQVEAKPSVYFIK.F	2

gi|46367787|ref|NP_00

18.2%

636

70671

9.5

polyadenylate-binding protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.10491.10491.2	2.4095	0.2791	1213.504	1213.4072	1	689.4	77.8%	1	R.AKEFTNVYIK.N	2 2
	step02.13764.13767.2	3.132	0.4621	1047.136	1046.1599	1	1190.3	87.5%	2	K.GFGFVSFER.H	2 2
*	step03.11510.11510.2	3.606	0.3696	1413.583	1413.6	1	1107.7	79.2%	2	R.KEFSPFGTITSAK.V	2
	step01.8640.8640.2	4.4441	0.5087	1663.471	1663.8021	1	1603.2	75.0%	1	K.GFGFVCFSSPEEATK.A	2 2 2 2
	step06.14082.14082.2	4.5428	0.5146	1544.568	1543.8783	1	795.3	76.9%	5	R.IVATKPLYVALAQR.K	2 2
	step06.15562.15562.2	5.2863	0.4714	1637.716	1638.0137	1	1281.9	85.7%	2	R.LFPLIQAMHPTLAGK.I	2 2
	step06.14741.14741.2	4.4637	0.4862	1653.728	1654.0131	1	1320.3	85.7%	2	R.LFPLIQAM*HPTLAGK.I	2 2
	step03.16588.16588.3	6.2142	0.5403	2742.683	2742.1626	1	1693.5	39.1%	5	K.ITGMLLEIDNSELLHMLESPESLR.S	3 3
	step03.16599.16599.2	5.9545	0.5344	2743.157	2742.1626	1	1521.0	50.0%	5	K.ITGMLLEIDNSELLHMLESPESLR.S	2 2
	step03.15912.15912.3	4.7198	0.5061	2757.554	2758.162	1	1694.3	38.0%	2	K.ITGM*LLEIDNSELLHMLESPESLR.S	3 3
	step02.16245.16245.3	5.955	0.5034	2758.521	2758.162	1	1308.7	38.0%	2	K.ITGMLLEIDNSELLHM*LESPESLR.S	3 3
	step02.15597.15597.3	3.7321	0.3077	2773.733	2774.1614	1	842.8	32.6%	1	K.ITGMLLEIDNSELLHMLESPESLR.S	3 3
	step04.12063.12063.3	5.4355	0.4935	1696.162	1694.9138	1	2239.5	65.0%	2	R.SKVDEAVAVLQAHQAK.E	3 3

Similarities: gi|208431833|ref|NP_0(7:6)
gi|45238849|ref|NP_11(6:7)
gi|185135971|ref|NP_0(1:12)

gi|39930523|ref|NP_61

18.1%

381

41037

5.0

hypothetical protein LOC144097 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.5579.5579.2	3.105	0.3659	2121.905	2122.272	1	496.7	55.3%	2	K.TPPPRPSPLEAGSDGCEEPK.Q	2
*	step03.5577.5577.3	4.6341	0.4387	2122.974	2122.272	1	1013.7	40.8%	2	K.TPPPRPSPLEAGSDGCEEPK.Q	3
*	step02.17723.17723.2	4.2788	0.4171	2000.794	2001.2291	1	2725.0	70.6%	1	K.SNILEAWSEGVALLQDVR.A	2
*	step02.17750.17750.3	5.6706	0.3207	2001.638	2001.2291	1	3998.3	57.4%	2	K.SNILEAWSEGVALLQDVR.A	3
*	step03.14340.14340.2	5.2166	0.5384	2224.217	2224.5635	1	2318.5	71.1%	2	R.MPAEIVVLLDSEDNPSLPKR.S	2
*	step03.14332.14332.3	3.5379	0.4728	2224.573	2224.5635	1	1716.3	42.1%	1	R.MPAEIVVLLDSEDNPSLPKR.S	3
*	step03.5130.5130.2	2.6337	0.2754	1324.583	1324.4666	1	544.2	75.0%	2	R.WKEPPGEEPVR.K	2

U	gi\|153792590\|ref\|NP_0	12	22	18.0%	854	98161	5.2	heat shock protein HSP 90-alpha isoform 1 [Homo sapiens]
U	gi\|154146191\|ref\|NP_0	12	22	21.0%	732	84660	5.0	heat shock protein HSP 90-alpha isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.11813.11813.2	3.4917	0.1693	1560.857	1561.7194	1	461.3	65.4%	2	R.ELISNSSDALDKIR.Y	2
	step04.13341.13341.3	5.4808	0.4095	3113.498	3112.44	1	960.6	31.7%	2	R.YESLTDPSKLDSGKELHINLIPNKQDR.T	3
	step01.7716.7716.2	3.7006	0.4473	1244.162	1243.4349	1	1365.0	81.8%	2	K.ADLINNLGTIAK.S	2 2
	step05.15584.15584.2	2.5022	0.2573	1779.928	1780.0587	5	246.9	46.4%	1	K.HSQFIGYPITLFVEK.E	2
	step02.12602.12602.2	4.2314	0.4331	1528.5	1528.648	1	1081.1	79.2%	2	K.SLTNDWEDHLAVK.H	2 2
	step03.11740.11740.2	2.3504	0.3534	1349.408	1349.4761	1	429.5	65.0%	1	K.HFSVEGQLEFR.A	2 2
	step06.14550.14550.2	2.7734	0.2377	1394.512	1393.5753	25	283.6	55.0%	2	R.RAPFDLFENRK.K	2
2	step01.7557.7557.2	3.4879	0.2795	1514.291	1514.6627	1	1400.8	80.8%	2	R.GVVDSEDLPLNISR.E	2 2
	step03.14796.14796.2	3.2953	0.3518	2579.857	2578.9585	1	217.6	35.0%	2	K.HGLEVIYMIEPIDEYCVQQLK.E	2
	step05.13771.13771.2	4.3219	0.5016	1915.969	1916.1707	1	1309.3	73.3%	2	K.KHLEINPDHSIIETLR.Q	2
	step03.12898.12898.2	4.5219	0.5303	1788.033	1787.9977	1	2023.6	85.7%	2	K.HLEINPDHSIIETLR.Q	2
	step03.12904.12904.3	3.7975	0.5105	1788.388	1787.9977	1	1857.8	55.4%	2	K.HLEINPDHSIIETLR.Q	3

Similarities: gi|20149594|ref|NP_03(4:8)

U	gi\|76150623\|ref\|NP_00	12	20	17.9%	808	88973	9.2	putative ribosomal RNA methyltransferase NOP2 [Homo sapiens]
U	gi\|76150625\|ref\|NP_00	12	20	17.9%	808	88973	9.2	putative ribosomal RNA methyltransferase NOP2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.8397.8397.2	2.8821	0.4459	1364.575	1363.5011	1	474.0	86.4%	2	R.FLPAVSDENSKR.L	2
step06.12572.12572.2	3.1792	0.3997	1216.484	1215.3865	1	858.1	80.0%	2	K.KGPQSLFNAPR.G	2
step05.14038.14038.2	3.3499	0.2718	1183.63	1183.4291	1	908.4	88.9%	2	K.RIQDIVGILR.D	2
step03.20183.20183.2	2.3328	0.165	3029.681	3029.5422	1	214.3	30.0%	1	K.LMDLFPLSELVEFLEANEVPRPVTLR.T	2
step01.7620.7620.2	3.3562	0.3939	1014.289	1014.1609	1	1071.0	87.5%	1	R.DLAQALINR.G	2
step03.11381.11381.2	2.9204	0.5189	1546.568	1546.7097	1	1281.3	73.1%	1	R.LGVTNTIISHYDGR.Q	2
step03.11396.11396.3	3.979	0.4031	1547.577	1546.7097	2	536.2	42.3%	1	R.LGVTNTIISHYDGR.Q	3
step01.8841.8841.2	4.5469	0.5006	1561.647	1561.7593	1	3166.5	89.3%	2	K.ELLLSAIDSVNATSK.T	2
step06.14492.14494.2	4.2997	0.4754	1826.425	1826.0696	1	946.3	78.6%	1	R.FYPHTHNMDGFFIAK.F	2
step06.13733.13733.2	4.5115	0.5654	1841.743	1842.069	1	668.3	71.4%	2	R.FYPHTHNM*DGFFIAK.F	2
step03.9093.9093.2	2.9503	0.1054	2351.673	2350.5488	6	151.8	36.5%	1	K.GTDTQTPAVLS#PSKTQATLKPK.D	2
step04.8211.8211.2	2.7673	0.3172	1148.998	1149.3248	1	333.2	65.0%	4	K.GPQPPTVSPIR.S	2

U	gi\|156151394\|ref\|NP_0	8	17	17.9%	636	71214	8.1	heterogeneous nuclear ribonucleoprotein R isoform 1 [Homo sapiens]
U	gi\|156151396\|ref\|NP_0	8	17	21.3%	535	59953	9.2	heterogeneous nuclear ribonucleoprotein R isoform 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.12789.12789.3	4.5215	0.3693	2637.357	2636.9397	1	1328.9	37.0%	1	R.KYGGPPPDSVYSGVQPGIGTEVFVGK.I	3 3
	step02.12792.12792.2	2.5902	0.2871	928.282	928.0697	1	638.3	85.7%	2	K.AGPIWDLR.L	2 2 2 2
	step03.7887.7887.2	3.3953	0.2909	1338.545	1338.485	1	1110.2	75.0%	2	K.LCDSYEIRPGK.H	2 2
2	step05.11776.11776.2	4.005	0.5719	1341.463	1340.5073	1	1373.2	90.9%	5	K.HLGVCISVANNR.L	2 2 2 2
	step02.12953.12953.2	3.3777	0.3667	1338.727	1338.4883	1	1411.8	85.0%	2	K.TKENILEEFSK.V	2 2
	step04.15126.15126.3	3.9328	0.364	2469.917	2469.8184	11	513.5	29.8%	1	K.VTGLTEGLVDVILYHQPDDKKK.N	3
	step02.12525.12525.2	3.0587	0.4831	1299.355	1299.3724	1	1106.8	83.3%	2	K.DYAFVHFEDR.G	2 2
	step03.10191.10191.2	3.5589	0.3964	1759.717	1759.855	1	630.9	61.5%	2	R.STAYEDYYYHPPPR.M	2 2

Similarities: gi|228008291|ref|NP_0(2:6)
gi|228008396|ref|NP_0(2:6)
gi|156151392|ref|NP_0(7:1)

gi|260099676|ref|NP_0

17.9%

464

54240

6.7

insulin-degrading enzyme isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.16463.16463.2	2.8339	0.3493	2788.232	2788.2095	1	377.0	32.6%	1	R.LLMTEVAWTKDELKEALDDVTLPR.L	2 2
step03.16425.16425.3	6.3756	0.44	2788.289	2788.2095	1	2293.5	40.2%	2	R.LLMTEVAWTKDELKEALDDVTLPR.L	3 3
step03.15705.15705.3	5.6536	0.3656	2803.946	2804.209	1	2976.7	43.5%	2	R.LLM*TEVAWTKDELKEALDDVTLPR.L	3 3
step06.15410.15410.2	3.7002	0.4709	1460.336	1459.7183	1	1562.4	83.3%	3	R.LHIEALLHGNITK.Q	2 2
step03.7830.7830.2	2.5149	0.1992	1176.489	1176.3071	4	466.5	68.8%	2	R.YREVQLPDR.G	2 2
step04.12911.12911.2	3.2503	0.5162	1595.718	1595.8239	1	1454.4	73.1%	1	R.TKEQLGYIVFSGPR.R	2 2
step05.12607.12607.2	4.2834	0.3956	1844.042	1845.0908	1	1148.0	85.7%	2	R.FIIQSEKPPHYLESR.V	2 2
step05.11293.11293.2	2.4472	0.2532	922.508	922.1098	1	790.9	100.0%	1	K.HIQALAIR.R	2 2

Similarities: gi|155969707|ref|NP_0(8:0)

gi|57222565|ref|NP_00

17.8%

309

35575

5.4

serine/threonine-protein phosphatase 2A catalytic subunit beta isoform [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step01.8616.8616.2	5.1617	0.5295	1793.72	1793.9347	1	1458.6	75.0%	2	K.SPDTNYLFMGDYVDR.G	2 2
step03.14068.14068.3	3.8312	0.4996	2657.041	2656.848	1	633.6	31.2%	1	R.GAGYTFGQDISETFNHANGLTLVSR.A	3 3
step04.12398.12398.2	5.8395	0.5619	1916.721	1917.091	1	2528.3	85.7%	2	R.AHQLVMEGYNWCHDR.N	2 2
step04.11159.11159.2	4.2406	0.5302	1933.571	1933.0903	1	753.8	71.4%	1	R.AHQLVM*EGYNWCHDR.N	2 2

Similarities: gi|4506017|ref|NP_002(4:0)

gi|18699732|ref|NP_05

17.7%

362

41807

4.9

45 kDa calcium-binding protein isoform 2 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.15028.15028.3	4.9168	0.4116	2544.762	2544.7542	1	1147.1	35.0%	1	R.LNEELKVDEETQEVLENLKDR.W	3 3
	step03.17816.17816.3	3.7621	0.2787	3329.764	3329.619	11	506.1	25.9%	1	R.WYQADSPPADLLLTEEEFLSFLHPEHSR.G	3 3
*	step01.10901.10901.2	2.5295	0.0954	2024.988	2023.9009	1	424.9	31.4%	1	K.Y#S#EFFTGS#KLVDYAR.S	2

Similarities: gi|7706573|ref|NP_057(2:1)

gi|27436901|ref|NP_00

17.7%

198

21348

8.9

39S ribosomal protein L12, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.533.533.3	4.7347	0.2875	2711.801	2711.1448	1	921.5	35.9%	2	K.IQQLVQDIASLTLLEISDLNELLK.K	3
*	step03.10784.10784.2	3.4209	0.2413	1284.613	1284.527	3	1231.2	80.0%	1	K.KLVESLPQEIK.A	2

gi|7706254|ref|NP_057

17.6%

529

59578

8.9

nucleolar protein 58 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16953.16953.3	4.1807	0.4324	1915.566	1915.1565	1	1898.0	48.5%	1	K.FQDTAEALAAFTALMEGK.I	3
*	step04.13882.13882.2	4.0323	0.463	1882.863	1883.199	1	977.6	70.0%	2	K.LNLSCIHSPVVNELMR.G	2
*	step02.16830.16830.2	2.7904	0.3893	1960.783	1960.4183	1	606.8	52.8%	1	R.MMAIAPNVTVMVGELVGAR.L	2
*	step04.12539.12539.2	4.2433	0.5001	1734.845	1734.9764	1	2432.8	80.0%	2	K.YGLIYHASLVGQTSPK.H	2
*	step03.5548.5548.3	3.5562	0.2663	2791.241	2791.9333	1	493.4	31.9%	1	K.HIKEEPLS#EEEPCTSTAIASPEKK.K	3

gi|51173724|ref|NP_00

17.6%

437

49601

8.1

bystin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.12468.12468.2	3.6174	0.5065	1546.79	1546.756	1	1155.9	85.7%	2	K.HAPLADQILAGNAVR.A	2
*	step03.5250.5250.2	2.8377	0.4507	2222.519	2223.3662	1	785.2	55.0%	2	K.AATM*TAAGHHAEVVVDPEDER.A	2
*	step06.16939.16939.2	4.3039	0.411	1534.565	1534.8285	1	1480.5	83.3%	2	R.VLDALVFHFLGFR.T	2
*	step06.15718.15718.2	4.9046	0.5226	2005.939	2006.3735	1	721.4	73.3%	3	R.ELPVLWHQCLLTLVQR.Y	2
*	step05.10327.10327.2	2.2798	0.2762	1415.483	1415.6224	2	380.8	63.6%	1	R.LQPHPQLSPEIR.R	2

U	gi\|187830823\|ref\|NP_0	5	12	17.6%	346	38501	6.0	cellular tumor antigen p53 isoform c [Homo sapiens]
U	gi\|187830855\|ref\|NP_0	5	12	17.9%	341	37826	5.8	cellular tumor antigen p53 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.12017.12017.2	2.9362	0.3926	1031.076	1031.19	1	1323.7	94.4%	3	R.LGFLHSGTAK.S	2 2
step02.12814.12814.2	3.8322	0.2425	1912.698	1912.129	1	1065.1	68.8%	2	K.TCPVQLWVDSTPPPGTR.V	2 2 2 2
step03.9780.9780.2	3.2773	0.3334	1666.544	1666.8108	2	368.7	57.1%	2	R.CSDSDGLAPPQHLIR.V	2 2 2 2
step05.15600.15600.3	3.8844	0.4452	2069.028	2069.3914	1	1038.0	40.3%	1	R.RPILTIITLEDSSGNLLGR.N	3 3 3 3
step05.15598.15598.2	6.0737	0.5519	2069.037	2069.3914	1	1122.7	72.2%	4	R.RPILTIITLEDSSGNLLGR.N	2 2 2 2

Similarities: gi|187830894|ref|NP_0(4:1)
gi|120407068|ref|NP_0(5:0)
gi|187830901|ref|NP_0(4:1)

U	gi\|32483377\|ref\|NP_05	2	2	17.6%	238	25839	7.5	thioredoxin-dependent peroxide reductase, mitochondrial isoform b [Homo sapiens]
U	gi\|5802974\|ref\|NP_006	2	2	16.4%	256	27693	7.8	thioredoxin-dependent peroxide reductase, mitochondrial isoform a precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.11435.11435.2	2.735	0.3938	1207.648	1207.3644	1	669.4	75.0%	1	K.HLSVNDLPVGR.S	2
	step04.12556.12556.3	7.5734	0.5931	3388.668	3387.6934	1	1497.1	31.7%	1	K.AFQYVETHGEVCPANWTPDSPTIKPSPAASK.E	3

U	gi\|239750771\|ref\|XP_0	2	2	17.6%	222	24070	9.0	PREDICTED: putative V-set and immunoglobulin domain-containing protein 6-like [Homo sapiens]
U	gi\|239756231\|ref\|XP_0	2	2	17.6%	222	24070	9.0	PREDICTED: putative V-set and immunoglobulin domain-containing protein 6-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.20493.20493.2	2.2954	0.1825	2459.046	2460.3584	24	223.9	18.9%	1	K.LSSVTAADTAVY#Y#CARDT#VR.G	2
	step04.18582.18584.2	2.2709	0.1056	2163.803	2163.4622	108	141.0	22.2%	1	R.APLS#LLFVVLLPHILT#AGK.K	2

gi|32483374|ref|NP_00

17.5%

594

66050

9.2

nucleolar protein 56 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.12179.12179.2	2.5771	0.3723	1151.613	1151.3806	1	1215.7	83.3%	2	R.LLLETHLPSK.K	2
*	step06.13513.13513.2	3.1136	0.3857	1279.554	1279.5535	1	892.0	70.0%	2	R.LLLETHLPSKK.K	2
*	step04.9353.9353.2	2.4766	0.505	1189.786	1189.3059	1	1232.2	85.0%	2	K.AQLGLGHSYSR.A	2
*	step02.19864.19864.3	5.2204	0.5025	2911.77	2911.3445	1	1079.1	35.4%	2	R.VDNMIIQSISLLDQLDKDINTFSMR.V	3
*	step03.19545.19545.3	6.4579	0.507	2927.492	2927.344	1	1351.4	41.7%	2	R.VDNMIIQSISLLDQLDKDINTFSM*R.V	3
*	step05.14750.14750.2	4.0655	0.4216	1825.375	1824.0734	1	1363.3	76.9%	1	R.VREWYGYHFPELVK.I	2
*	step05.11942.11942.2	3.5433	0.4972	1309.505	1309.5397	1	1258.3	79.2%	2	R.LIAHAGSLTNLAK.Y	2
*	step06.15112.15112.2	3.824	0.4316	1411.704	1411.6322	1	1401.3	86.4%	3	K.YGLIFHSTFIGR.A	2
*	step03.5831.5831.2	3.8449	0.4556	1905.649	1906.083	1	756.7	55.9%	1	R.KFSKEEPVSSGPEEAVGK.S	2

gi|48762932|ref|NP_00

17.5%

548

59621

5.6

T-complex protein 1 subunit theta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.13654.13654.2	4.6522	0.3628	1741.826	1741.0126	1	1290.2	78.6%	2	R.KAHEILPNLVCCSAK.N	2
*	step02.14300.14300.2	2.4578	0.1577	1529.475	1530.7085	7	320.3	50.0%	1	K.NLRDIDEVSSLLR.T	2
*	step04.13948.13948.3	4.526	0.3409	2475.231	2474.7502	1	935.5	33.3%	2	K.LIAQACVSIFPDSGHFNVDNIR.V	3
*	step05.14702.14702.2	4.8213	0.5925	1820.534	1820.1462	1	1727.3	67.6%	2	K.ILGSGISSSSVLHGMVFK.K	2
*	step02.16655.16655.3	5.536	0.4232	2991.019	2991.4028	1	1937.0	34.3%	2	K.NVGLDIEAEVPAVKDM*LEAGILDTYLGK.Y	3

U	gi\|4501881\|ref\|NP_001	5	15	17.2%	377	42051	5.4	actin, alpha skeletal muscle [Homo sapiens]
U	gi\|4885049\|ref\|NP_005	5	15	17.2%	377	42019	5.4	actin, alpha cardiac muscle 1 proprotein [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.13756.13756.2	3.0851	0.3071	1199.462	1199.4302	2	621.9	75.0%	2	R.AVFPSIVGRPR.H	2 2 2 2 2
step04.9354.9354.2	2.4427	0.2771	1172.291	1172.4069	1	663.4	70.0%	1	R.HQGVMVGMGQK.D	2 2 2 2
step03.12357.12357.2	3.2903	0.2829	1961.381	1962.1718	1	895.2	60.0%	2	K.YPIEHGIITNWDDMEK.I	2 2
step06.14184.14184.2	3.4169	0.447	1517.505	1516.6869	1	1223.6	85.0%	8	K.IWHHTFYNELR.V	2 2 2 2
step01.8051.8051.2	4.7689	0.504	1792.318	1791.94	1	1550.1	80.0%	2	K.SYELPDGQVITIGNER.F	2 2 2 2 2

gi|83281438|ref|NP_00

17.1%

258

29062

4.8

eukaryotic translation initiation factor 3 subunit J [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.12882.12882.2	2.2251	0.2338	1512.476	1512.7332	1	441.2	58.3%	1	K.VLTPEEQLADKLR.L	2
*	step02.14970.14970.3	5.4645	0.5407	3399.846	3399.6875	1	1707.6	33.3%	1	K.LQEESDLELAKETFGVNNAVYGIDAMNPSSR.D	3

gi|4503841|ref|NP_001

16.9%

609

69843

6.6

X-ray repair cross-complementing protein 6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11240.11240.2	4.8695	0.556	1920.634	1920.05	1	467.2	56.2%	2	R.IM*LFTNEDNPHGNDSAK.A	2
*	step02.15926.15926.2	3.4069	0.4509	1403.476	1403.6718	1	1391.5	86.4%	2	R.DTGIFLDLMHLK.K	2
*	step05.14855.14855.2	3.6183	0.4441	1400.741	1400.6062	1	987.2	86.4%	2	K.KPGGFDISLFYR.D	2
*	step05.17102.17102.2	3.9651	0.3319	2035.208	2035.5449	1	512.8	64.7%	2	R.FDDPGLMLMGFKPLVLLK.K	2
*	step03.16263.16263.2	3.0384	0.351	2134.836	2133.4739	1	503.0	41.7%	1	K.IQVTPPGFQLVFLPFADDK.R	2
*	step06.16200.16200.2	3.5187	0.4486	2288.993	2289.6602	1	573.8	47.4%	1	K.IQVTPPGFQLVFLPFADDKR.K	2
*	step03.8550.8550.2	3.9169	0.3803	1693.797	1692.8483	1	873.5	65.4%	2	K.VEYSEEELKTHISK.G	2
*	step03.11524.11524.2	3.1966	0.2932	1173.316	1173.3845	1	756.3	77.8%	2	K.KQELLEALTK.H	2

gi|40538736|ref|NP_06

16.8%

620

67257

6.8

ran-binding protein 10 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.10804.10804.2	4.6011	0.4991	1641.675	1641.8094	1	1941.9	88.5%	2	K.DKYNYIGLSQGNLR.V	2
	step06.14394.14394.2	3.1432	0.3596	1937.939	1938.2081	1	1035.4	62.5%	2	R.ATHPIPAACGIYYFEVK.I	2 2
	step04.12240.12240.2	3.8502	0.4726	1996.25	1997.2491	1	810.7	61.1%	2	K.GRDGYMGIGLSAQGVNMNR.L	2 2
*	step05.11401.11401.2	3.9071	0.5607	1472.531	1472.6674	1	1481.3	83.3%	5	K.VQGTVHCFPISAR.L	2
*	step06.16060.16060.2	5.4582	0.4696	2046.935	2047.4509	1	945.8	75.0%	2	R.FYPGLLEHNPNLLFMLK.C	2
*	step06.15575.15575.2	4.1996	0.3844	2062.833	2063.4502	1	829.1	68.8%	2	R.FYPGLLEHNPNLLFM*LK.C	2
*	step03.5996.5996.3	4.3614	0.3133	2815.71	2814.9858	166	319.8	27.2%	1	R.IVNGAYKHEDLQTDESSMDDRHPR.R	3

Similarities: gi|39812378|ref|NP_00(2:5)

gi|5031973|ref|NP_005

16.8%

440

48121

5.1

protein disulfide-isomerase A6 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.13612.13612.3	6.7197	0.5945	2583.101	2582.8555	1	3559.7	44.8%	1	K.VGAVDADKHHSLGGQYGVQGFPTIK.I	3
*	step02.17001.17001.3	3.5352	0.4165	2794.829	2795.137	1	519.4	32.3%	1	R.ALDLFSDNAPPPELLEIINEDIAKR.T	3
*	step02.17025.17025.2	3.1272	0.2568	2796.119	2795.137	1	225.7	31.2%	1	R.ALDLFSDNAPPPELLEIINEDIAKR.T	2
*	step04.14606.14606.3	7.0345	0.5299	2648.028	2647.9558	1	2427.3	46.7%	2	R.TCEEHQLCVVAVLPHILDTGAAGR.N	3

gi|4503483|ref|NP_001

858

95338

6.8

elongation factor 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.15486.15486.2	2.265	0.0855	1878.533	1878.1008	2	502.8	35.7%	1	-.M*VNFT#VDQIRAIMDK.K	2
*	step04.16209.16209.3	3.5974	0.216	2804.054	2803.0762	27	523.5	26.0%	1	K.DGAGFLINLIDSPGHVDFSSEVTAALR.V	3
*	step01.14895.14895.2	3.0862	0.3541	2220.465	2221.4946	1	719.9	55.9%	3	R.ALLELQLEPEELYQTFQR.I	2
*	step02.15969.15969.2	3.5399	0.3516	1495.673	1495.7808	1	1513.7	81.8%	2	R.TFCQLILDPIFK.V	2
*	step04.10542.10542.2	3.4337	0.4583	1403.911	1403.6515	1	1243.3	80.0%	2	K.KEDLYLKPIQR.T	2
*	step02.11140.11140.2	2.2784	0.2787	1275.58	1275.4786	3	337.5	72.2%	1	K.EDLYLKPIQR.T	2
*	step03.6068.6068.2	3.5961	0.2659	1568.645	1568.7471	1	1016.7	75.0%	2	K.DLEEDHACIPIKK.S	2
*	step03.11860.11860.3	5.3908	0.3757	2144.502	2144.3306	1	2844.3	51.3%	2	K.ARPFPDGLAEDIDKGEVSAR.Q	3
*	step02.16767.16767.3	4.9087	0.4944	3006.523	3007.487	1	2239.0	38.0%	1	R.LM*EPIYLVEIQCPEQVVGGIYGVLNR.K	3
*	step04.16690.16690.3	5.3155	0.4118	3119.9	3119.6604	1	818.2	30.8%	1	R.LMEPIYLVEIQCPEQVVGGIYGVLNRK.R	3

gi|50053795|ref|NP_00

611

69151

5.7

eukaryotic translation initiation factor 4B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.17384.17384.3	5.9659	0.5895	2922.597	2922.2358	1	721.3	32.3%	4	K.SPPYTAFLGNLPYDVTEESIKEFFR.G	3
*	step03.17366.17366.2	4.8967	0.5547	2923.246	2922.2358	1	680.0	45.8%	6	K.SPPYTAFLGNLPYDVTEESIKEFFR.G	2
*	step05.18052.18052.3	5.768	0.5236	3345.506	3345.6614	1	984.0	31.0%	6	R.LKGFGYAEFEDLDSLLSALSLNEESLGNRR.I	3
*	step03.17661.17661.3	5.0655	0.5465	3103.415	3104.33	1	1090.7	34.3%	4	K.GFGYAEFEDLDSLLSALSLNEESLGNRR.I	3
*	step02.17945.17945.2	2.3803	0.2075	3104.279	3104.33	2	182.9	27.8%	1	K.GFGYAEFEDLDSLLSALSLNEESLGNRR.I	2
*	step03.5298.5298.2	2.675	0.2424	2016.372	2016.1191	9	131.1	40.6%	1	R.IRVDVADQAQDKDRDDR.S	2
*	step03.10592.10592.2	3.5531	0.4138	1532.447	1532.7262	1	1057.6	66.7%	2	R.AASIFGGAKPVDTAAR.E	2
*	step06.11825.11825.2	2.4133	0.3197	1564.796	1564.8763	29	133.7	46.2%	1	K.VMPAPPPKENAWVK.R	2

gi|7657381|ref|NP_055

504

55181

6.6

pre-mRNA-processing factor 19 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.15394.15394.3	5.8648	0.3182	2902.503	2902.2458	1	1095.0	27.8%	2	R.QVASHVGLHSASIPGILALDLCPSDTNK.I	3
*	step05.14332.14332.2	6.1828	0.6139	2601.941	2602.9265	1	1319.5	58.7%	2	K.KVTSVVFHPSQDLVFSASPDATIR.I	2
*	step05.14316.14316.3	5.759	0.5115	2603.067	2602.9265	1	3066.5	47.8%	4	K.KVTSVVFHPSQDLVFSASPDATIR.I	3
*	step02.14632.14632.3	6.2891	0.5584	3475.246	3475.7693	1	1544.9	29.8%	2	K.VTDETSGCSLTCAQFHPDGLIFGTGTMDSQIK.I	3

gi|13129110|ref|NP_07

342

36724

5.2

methylosome protein 50 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.11352.11352.2	2.4609	0.1793	1372.894	1373.6254	1	738.4	62.5%	2	R.KETPPPLVPPAAR.E	2
*	step03.7738.7738.2	2.8998	0.2336	1454.49	1453.6053	2	611.2	61.1%	4	R.KET#PPPLVPPAAR.E	2
*	step04.12815.12815.2	3.7364	0.3513	1723.691	1723.912	1	1596.2	78.1%	1	R.YRSDGALLLGASSLSGR.C	2
*	step03.13020.13020.3	4.4718	0.4391	2904.123	2903.141	1	1710.7	35.6%	2	K.FCKYEHDDIVSTVSVLSSGTQAVSGSK.D	3

U	gi\|208431833\|ref\|NP_0	12	27	16.5%	660	72391	9.3	polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
U	gi\|4504715\|ref\|NP_003	12	27	16.9%	644	70783	9.3	polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
U	gi\|208431836\|ref\|NP_0	12	27	17.3%	631	69579	9.5	polyadenylate-binding protein 4 isoform 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.12526.12526.2	3.9879	0.4882	1714.906	1713.8278	1	1747.0	78.6%	1	K.GYAFVHFETQEAADK.A	2
step03.10491.10491.2	2.4095	0.2791	1213.504	1213.4072	1	689.4	77.8%	1	K.AKEFTNVYIK.N	2 2
step01.8640.8640.2	4.4441	0.5087	1663.471	1663.8021	1	1603.2	75.0%	1	K.GFGFVCFSSPEEATK.A	2 2 2 2
step05.13216.13216.2	3.8072	0.4649	1515.601	1515.825	1	926.8	80.8%	2	R.IVGSKPLYVALAQR.K	2
step05.15068.15068.2	4.4472	0.4118	1670.672	1671.0005	1	879.8	78.6%	1	R.LFPLIQTMHSNLAGK.I	2
step06.14543.14543.2	4.5867	0.4537	1686.731	1686.9999	1	1048.6	78.6%	4	R.LFPLIQTM*HSNLAGK.I	2
step03.16588.16588.3	6.2142	0.5403	2742.683	2742.1626	1	1693.5	39.1%	5	K.ITGMLLEIDNSELLHMLESPESLR.S	3 3
step03.16599.16599.2	5.9545	0.5344	2743.157	2742.1626	1	1521.0	50.0%	5	K.ITGMLLEIDNSELLHMLESPESLR.S	2 2
step03.15912.15912.3	4.7198	0.5061	2757.554	2758.162	1	1694.3	38.0%	2	K.ITGM*LLEIDNSELLHMLESPESLR.S	3 3
step02.16245.16245.3	5.955	0.5034	2758.521	2758.162	1	1308.7	38.0%	2	K.ITGMLLEIDNSELLHM*LESPESLR.S	3 3
step02.15597.15597.3	3.7321	0.3077	2773.733	2774.1614	1	842.8	32.6%	1	K.ITGMLLEIDNSELLHMLESPESLR.S	3 3
step05.12836.12836.2	4.3224	0.5181	1703.879	1703.924	1	1638.2	80.0%	2	R.SKVDEAVAVLQAHHAK.K	2

Similarities: gi|46367787|ref|NP_00(7:5)
gi|45238849|ref|NP_11(1:11)
gi|185135971|ref|NP_0(1:11)

U	gi\|20336290\|ref\|NP_05	14	24	16.3%	1155	129438	8.5	putative ATP-dependent RNA helicase DHX30 isoform 2 [Homo sapiens]
U	gi\|20336294\|ref\|NP_61	14	24	15.7%	1194	133938	8.8	putative ATP-dependent RNA helicase DHX30 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.11889.11889.2	2.6565	0.3116	1276.485	1276.4901	1	413.1	65.0%	2	K.NLMQFHTVGTK.T	2
step06.13330.13331.2	2.8528	0.3807	1579.918	1579.8625	1	303.0	54.2%	2	R.RPCTIQVPEPILR.K	2
step04.14613.14613.2	4.2282	0.4936	2529.706	2530.862	1	1061.2	55.0%	2	R.KIETFLNHYPVESSWIAPELR.L	2
step04.14621.14621.3	6.0933	0.5724	2530.76	2530.862	1	2578.9	47.5%	2	R.KIETFLNHYPVESSWIAPELR.L	3
step02.15000.15000.3	3.7135	0.3662	2583.791	2583.8752	1	1659.5	38.0%	1	K.DSGPLSDPITGKPYVPLLEAEEVR.L	3
step02.15006.15006.2	2.413	0.2077	2584.946	2583.8752	1	507.2	39.1%	1	K.DSGPLSDPITGKPYVPLLEAEEVR.L	2
step04.13547.13547.3	5.6282	0.5175	2473.63	2473.7273	1	2282.2	44.0%	1	R.KLQSNPSLEGVSHVIVDEVHER.D	3
step05.14610.14610.2	4.1544	0.4426	1900.318	1900.298	1	2254.1	83.3%	2	K.YLILPVHSNIPMMDQK.A	2
step03.16217.16217.2	3.3342	0.2001	1982.976	1982.2672	22	397.6	38.2%	2	K.AVDEAVILLQEIGVLDQR.E	2
step04.12663.12663.3	4.0662	0.5613	1726.46	1725.8865	1	1766.7	51.7%	1	K.ALLSHDSGSDHLAFVR.A	3
step04.12684.12684.2	4.3223	0.4991	1726.587	1725.8865	1	1687.5	70.0%	2	K.ALLSHDSGSDHLAFVR.A	2
step04.15130.15130.2	4.0679	0.5844	2286.001	2286.5732	1	1350.7	60.0%	1	R.DSSQVHPLAVLLLTDGDVHIR.D	2
step04.15110.15110.3	6.3576	0.4291	2286.673	2286.5732	1	3787.0	52.5%	2	R.DSSQVHPLAVLLLTDGDVHIR.D	3
step03.18512.18512.2	5.2996	0.5248	2799.352	2799.2153	1	350.9	46.0%	3	R.SELAALPPSVQEEHGQLLALLAELLR.G	2

gi|189083688|ref|NP_0

16.2%

291

31821

5.2

exosome complex exonuclease RRP42 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.10812.10812.2	3.9865	0.5441	1429.655	1428.6179	1	1573.5	90.9%	2	K.VYIVHGVQEDLR.V	2
*	step04.11632.11632.2	2.4506	0.1081	1151.924	1152.3687	4	224.9	65.0%	1	K.LGHTDILVGVK.A	2
*	step04.17453.17453.3	3.7563	0.4271	2558.762	2558.8606	1	1605.6	38.0%	3	R.HVVDATLQEEACSLASLLVSVTSK.G	3
*	step03.17453.17453.2	6.7055	0.6081	2559.072	2558.8606	1	3617.3	63.0%	2	R.HVVDATLQEEACSLASLLVSVTSK.G	2

gi|17402904|ref|NP_47

16.2%

272

28235

6.3

exosome complex exonuclease MTR3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.5880.5880.3	4.16	0.4164	3110.959	3111.2827	1	411.5	30.6%	2	R.IRGPEESQPPQLYAADEEEAPGTRDPTR.L	3
*	step02.6999.6999.2	3.6701	0.4995	1309.385	1309.4136	1	1729.4	76.7%	2	R.GGGPAGAGGEAPAALR.G	2

U	gi\|54607072\|ref\|NP_47	2	5	16.2%	167	19298	7.5	putative metalloprotease C21orf57 isoform 1 [Homo sapiens]
U	gi\|54607074\|ref\|NP_00	2	5	22.3%	121	14119	6.2	putative metalloprotease C21orf57 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.8747.8747.2	2.6672	0.3362	1294.631	1294.4722	1	1289.5	90.0%	2	K.FDLGIICVDNK.N	2
	step05.14920.14920.2	3.8326	0.3176	1880.675	1881.1232	1	777.5	66.7%	3	R.NVPTDVLSFPFHEHLK.A	2

U	gi\|14043072\|ref\|NP_11	5	10	16.1%	353	37430	8.9	heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1 [Homo sapiens]
U	gi\|4504447\|ref\|NP_002	5	10	16.7%	341	36006	8.6	heterogeneous nuclear ribonucleoproteins A2/B1 isoform A2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step06.12703.12703.3	4.3425	0.4841	2009.31	2009.2545	1	1302.3	50.0%	1	K.KLFVGGIKEDTEEHHLR.D	3 3 3
2	step04.12090.12090.2	5.2139	0.4918	1881.565	1881.0815	1	2088.9	80.0%	4	K.LFVGGIKEDTEEHHLR.D	2 2 2
	step02.13870.13870.2	4.355	0.5528	1697.432	1696.7972	1	1595.3	82.1%	1	R.GFGFVTFDDHDPVDK.I	2
	step02.8111.8111.2	4.3371	0.5754	2192.571	2191.243	1	830.8	41.7%	2	R.NMGGPYGGGNYGPGGSGGSGGYGGR.S	2
	step02.7349.7349.2	5.6959	0.5071	2206.359	2207.2424	1	2215.5	66.7%	2	R.NM*GGPYGGGNYGPGGSGGSGGYGGR.S	2

Similarities: gi|14043070|ref|NP_11(2:3)
gi|58761496|ref|NP_00(2:3)

gi|222352111|ref|NP_1

16.0%

293

34222

9.9

MKI67 FHA domain-interacting nucleolar phosphoprotein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.12400.12400.2	4.5869	0.4229	1645.77	1645.9275	1	1214.4	73.1%	2	R.KKQEQLTPGVVYVR.H	2
*	step05.14984.14984.3	3.5869	0.332	2324.823	2324.6614	1	792.3	37.5%	1	K.ELFKDWNIPFKQPSYPSVK.R	3
*	step03.13859.13859.2	4.7891	0.3916	1637.744	1637.9006	1	1513.2	73.1%	2	K.KGIDYDFPSLILQK.T	2

gi|24797097|ref|NP_00

16.0%

319

33361

7.6

pyrroline-5-carboxylate reductase 1, mitochondrial isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.11765.11765.2	2.932	0.494	1143.423	1143.3203	1	1427.5	86.4%	2	K.GFTAAGVLAAHK.I	2 2
	step05.15200.15200.2	4.7381	0.5637	2322.104	2322.5225	1	1367.8	50.0%	1	K.DNVSSPGGATIHALHVLESGGFR.S	2 2
*	step03.8285.8285.2	2.9344	0.435	1540.16	1539.6724	1	655.8	63.3%	1	K.LDSPAGTALSPSGHTK.L	2

Similarities: gi|24797095|ref|NP_72(2:1)

U	gi\|14110414\|ref\|NP_00	4	5	16.0%	306	32835	8.2	heterogeneous nuclear ribonucleoprotein D0 isoform c [Homo sapiens]
U	gi\|51477708\|ref\|NP_00	4	5	17.1%	287	30672	8.4	heterogeneous nuclear ribonucleoprotein D0 isoform d [Homo sapiens]
U	gi\|14110420\|ref\|NP_11	4	5	13.8%	355	38434	7.8	heterogeneous nuclear ribonucleoprotein D0 isoform a [Homo sapiens]
U	gi\|14110417\|ref\|NP_11	4	5	14.6%	336	36272	8.1	heterogeneous nuclear ribonucleoprotein D0 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.13456.13456.2	2.9485	0.4183	1484.457	1484.7449	1	846.9	66.7%	1	K.MFIGGLSWDTTKK.D	2
step03.14463.14463.2	3.2424	0.3705	915.519	915.11255	1	605.7	85.7%	2	R.GFGFVLFK.E	2
step04.13553.13553.2	4.2544	0.4863	1859.772	1860.1356	1	1232.1	71.4%	1	R.GFCFITFKEEEPVKK.I	2
step04.11492.11492.2	2.9366	0.0862	1655.488	1656.7954	2	506.6	41.7%	1	K.KYHNVGLS#KCEIK.V	2

U	gi\|4885375\|ref\|NP_005	4	7	16.0%	213	21365	10.9	histone H1.2 [Homo sapiens]
U	gi\|4885379\|ref\|NP_005	4	7	15.5%	219	21865	11.0	histone H1.4 [Homo sapiens]
U	gi\|4885377\|ref\|NP_005	4	7	15.4%	221	22350	11.0	histone H1.3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.10584.10584.1	2.4078	0.2757	1327.678	1327.5518	4	416.6	54.2%	2	R.KASGPPVSELITK.A	1
step01.6629.6629.2	2.7622	0.3572	1199.208	1199.3789	1	503.4	68.2%	2	K.ASGPPVSELITK.A	2
step04.10149.10149.2	3.1749	0.206	975.362	974.1798	1	969.3	88.9%	2	R.SGVSLAALKK.A	2
step03.7907.7907.2	3.1122	0.3784	1236.55	1236.3992	1	812.3	72.7%	1	K.KALAAAGYDVEK.N	2

gi|7662276|ref|NP_055

15.9%

921

102140

6.5

hypothetical protein LOC9747 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18187.18187.2	2.7017	0.4415	3187.721	3187.5886	1	265.3	25.0%	1	R.VLFTFPGNLVTSVAGIYFTDNKGDTSFFK.V	2
*	step05.18133.18133.3	3.7408	0.3091	3188.006	3187.5886	19	289.0	25.9%	1	R.VLFTFPGNLVTSVAGIYFTDNKGDTSFFK.V	3
	step03.13690.13690.2	3.1635	0.2933	1100.568	1100.3385	1	837.8	88.9%	2	K.LGPFLLNAVR.W	2 2
	step05.16836.16836.2	4.4849	0.4752	2688.056	2688.0762	1	955.2	47.9%	3	R.FPGNLLLNPFGISITSQSLNPGPFR.T	2 2
	step05.16841.16841.3	4.0324	0.461	2688.11	2688.0762	9	473.3	28.1%	1	R.FPGNLLLNPFGISITSQSLNPGPFR.T	3 3
	step03.14747.14747.3	5.5351	0.5304	2583.326	2583.9468	1	1608.5	43.5%	2	K.LGPDGAAFLQIPAEEIPAYMSVHR.L	3 3
	step03.14763.14763.2	5.2307	0.5609	2584.804	2583.9468	1	738.1	52.2%	4	K.LGPDGAAFLQIPAEEIPAYMSVHR.L	2 2
	step05.10309.10309.2	2.2146	0.1379	976.303	976.1575	1	685.2	78.6%	1	R.YRLPVATR.E	2 2
	step01.8766.8766.2	3.7179	0.2815	1318.925	1318.527	1	1742.5	85.0%	1	R.LWDEVMQAVAR.L	2 2
	step06.14332.14332.2	2.2011	0.1948	1495.71	1494.7659	13	198.5	54.2%	1	R.LGAEPFPLRLPQR.I	2 2
	step05.13472.13472.2	2.8306	0.3925	1221.726	1221.3927	1	534.4	70.0%	2	K.GLWGPVHELGR.N	2 2
	step02.17032.17032.2	3.4479	0.2764	1818.512	1819.0967	1	1013.9	71.4%	4	K.NLAPFFEAWAWPIQK.E	2 2

Similarities: gi|310115365|ref|XP_0(8:4)
gi|310115367|ref|XP_0(2:10)

U	gi\|28557677\|ref\|NP_11	4	6	15.9%	365	41290	8.7	PHD finger protein 6 isoform 1 [Homo sapiens]
U	gi\|62865858\|ref\|NP_00	4	6	15.9%	365	41290	8.7	PHD finger protein 6 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.11277.11277.2	6.2114	0.586	2080.44	2080.3665	1	2271.0	73.5%	2	K.LMCSLCHCPGATIGCDVK.T	2 2
step04.11332.11332.3	3.901	0.2056	2080.724	2080.3665	1	1104.0	44.1%	1	K.LMCSLCHCPGATIGCDVK.T	3 3
step02.12268.12268.3	6.0393	0.5596	2698.839	2698.7505	1	1390.8	41.3%	2	K.TAHNSEADLEESFNEHELEPSSPK.S	3
step05.14494.14495.2	2.4064	0.1389	1956.69	1955.9534	3	380.3	33.3%	1	K.CT#LCS#QPGATIGCEIK.A	2

Similarities: gi|63478060|ref|NP_11(2:2)

gi|4506619|ref|NP_000

15.9%

157

17779

11.3

60S ribosomal protein L24 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.12315.12315.2	3.8442	0.2794	1449.654	1449.6908	1	1430.6	86.4%	2	-.MKVELCSFSGYK.I	2
*	step03.10792.10792.2	3.7179	0.2848	1465.672	1465.6902	1	1350.9	90.9%	2	-.M*KVELCSFSGYK.I	2
*	step01.8212.8212.2	4.8978	0.5476	1263.512	1262.5016	1	1669.2	87.5%	2	R.AITGASLADIMAK.R	2

gi|117647226|ref|NP_0

15.6%

403

47347

9.4

mitochondrial ribonuclease P protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.12444.12444.2	2.9031	0.2101	1901.988	1903.036	1	654.7	66.7%	1	K.NESTPPSEELELDKWK.T	2
*	step02.11195.11195.3	3.6753	0.0891	2597.373	2597.7227	1	1079.6	31.5%	1	K.SSVQEECVSTISSSKDEDPLAATR.E	3
*	step04.14334.14334.2	3.6234	0.436	1667.748	1667.882	1	1060.7	83.3%	1	R.NVDPFHIYFCNLK.I	2
*	step01.7901.7901.1	2.0628	0.0943	1128.177	1127.3143	1	430.1	66.7%	1	K.VYVIGSFVDK.S	1

U	gi\|213417911\|ref\|NP_0	3	4	15.6%	302	33123	8.4	interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 2 [Homo sapiens]
U	gi\|4505581\|ref\|NP_003	3	4	15.0%	313	34404	8.4	interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 1 [Homo sapiens]
U	gi\|213417919\|ref\|NP_0	3	4	16.3%	288	31635	8.4	interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.13640.13640.2	3.5341	0.3655	1547.815	1547.7393	1	736.8	66.7%	2	R.SDVQIHVPTFTFR.V	2
step06.15679.15679.2	3.9318	0.1875	2185.428	2184.4458	1	835.9	52.8%	1	K.NQLNPIGSLQELAIHHGWR.L	2
step03.9369.9369.2	4.1558	0.5616	1627.634	1627.7795	1	1265.8	75.0%	1	R.LPEYTLSQEGGPAHK.R	2

U	gi\|284813529\|ref\|NP_0	18	31	15.5%	1506	168936	5.1	protein VPRBP isoform 2 [Homo sapiens]
U	gi\|7662316\|ref\|NP_055	18	31	15.5%	1507	169007	5.1	protein VPRBP isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.15360.15362.3	6.4463	0.5287	2983.296	2983.3457	1	1618.5	33.0%	1	K.AELTTLLEQWEKEHGSGQDMVPILTR.M	3
step03.14894.14894.3	6.3167	0.5256	2999.581	2999.3452	1	1121.7	35.0%	2	K.AELTTLLEQWEKEHGSGQDM*VPILTR.M	3
step03.6035.6035.2	2.689	0.3842	1800.203	1801.0118	1	334.3	65.4%	2	R.M*SQLIEKETEEYRK.G	2
step03.11946.11946.2	4.131	0.4304	1467.852	1468.7267	1	1754.2	86.4%	2	R.LRELQLQEVALR.Q	2
step02.18428.18428.3	4.4832	0.3203	2953.623	2953.4875	1	905.0	34.4%	2	R.LILQYLTPLGEYQELLPIFM*QLGSR.E	3
step03.10340.10340.2	3.1583	0.3276	1391.911	1391.5562	1	771.3	66.7%	1	K.FATEFVAHGGVQK.L	2
step04.10377.10377.2	3.9791	0.4555	1536.732	1536.7563	1	1458.3	76.9%	2	R.TEGGILVHPQPPYK.A	2
step04.12764.12764.2	3.7929	0.4365	1626.74	1626.9225	1	591.8	66.7%	2	R.VSGKPLLIGTDVSLAR.L	2
step04.12782.12782.3	3.5794	0.2816	1627.174	1626.9225	1	1210.7	46.7%	1	R.VSGKPLLIGTDVSLAR.L	3
step04.15676.15676.2	3.9814	0.3644	1572.758	1571.9285	1	1228.4	83.3%	2	R.ISFPEKELLLLIR.N	2
step04.15687.15687.3	3.8981	0.2789	1572.977	1571.9285	1	1527.0	56.2%	1	R.ISFPEKELLLLIR.N	3
step05.16386.16386.2	3.2917	0.3711	1953.041	1953.2277	1	535.4	65.6%	3	R.HLPSPPTLDSIITEYLR.E	2
step03.16268.16268.2	3.5831	0.1975	2032.711	2033.2075	1	519.7	45.8%	2	R.HLPS#PPTLDSIITEYLR.E	2
step03.12582.12582.3	4.9337	0.3939	3125.047	3125.3044	1	1040.2	32.7%	2	K.LYNVFSGQEEASYNCHNSAITHLEPSR.D	3
step03.10827.10827.2	4.2942	0.4755	1626.438	1626.707	1	972.8	87.5%	2	K.HSFTEDHYVEFSK.H	2
step02.11379.11379.2	3.2188	0.3958	1545.407	1545.6786	1	966.9	65.4%	1	K.GDIAHIYDIQTGNK.L	2
step04.13930.13930.2	4.6407	0.4187	1793.453	1793.0591	1	792.0	64.3%	1	K.LLTLFNPDLANNYKR.N	2
step06.14648.14648.2	3.9461	0.4128	1808.912	1809.0552	1	1133.9	71.4%	2	R.TFHLLHTVPALDQCR.V	2

U	gi\|4557703\|ref\|NP_000	7	11	15.5%	645	65865	8.0	keratin 2a [Homo sapiens]
U	gi\|47132620\|ref\|NP_00	7	11	15.6%	639	65433	8.0	keratin, type II cytoskeletal 2 epidermal [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.10121.10121.2	2.6439	0.3647	1320.908	1321.343	1	869.3	63.3%	2	R.HGGGGGGFGGGGFGSR.S	2
step01.6176.6176.2	3.525	0.3065	1476.448	1476.6593	1	1829.1	90.9%	1	R.FLEQQNQVLQTK.W	2 2 2
step04.16174.16174.3	5.5985	0.4672	3321.14	3320.8064	1	955.4	28.7%	2	K.WELLQQM*NVGTRPINLEPIFQGYIDSLK.R	3
step06.16126.16126.3	6.1939	0.5364	3476.017	3476.9927	1	1883.6	38.4%	2	K.WELLQQM*NVGTRPINLEPIFQGYIDSLKR.Y	3
step01.9395.9395.2	2.8707	0.1457	1461.595	1461.6846	1	875.2	72.7%	2	K.VDLLNQEIEFLK.V	2
step01.9431.9434.2	3.7473	0.4272	1330.377	1330.5093	1	1293.9	81.8%	1	R.NLDLDSIIAEVK.A	2 2
step03.14752.14752.3	4.2485	0.3607	2200.592	2199.4075	1	1132.6	44.4%	1	R.NKLNDLEEALQQAKEDLAR.L	3

Similarities: gi|119395750|ref|NP_0(1:6)
gi|194018511|ref|NP_7(1:6)
gi|119703753|ref|NP_0(1:6)

gi|7657441|ref|NP_055

15.5%

181

20630

8.9

28 kDa heat- and acid-stable phosphoprotein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.4126.4126.2	2.5542	0.0995	2192.961	2192.8777	1	819.4	40.6%	1	K.SLDS#DES#EDEEDDYQQK.R	2
*	step03.8624.8624.2	2.5592	0.2684	1214.823	1214.3936	1	867.5	75.0%	2	K.KVTQLDLDGPK.E	2

U	gi\|239787838\|ref\|NP_0	8	13	15.4%	929	105674	9.4	testis-expressed sequence 10 protein isoform 1 [Homo sapiens]
U	gi\|239787844\|ref\|NP_0	8	13	15.7%	913	103915	9.4	testis-expressed sequence 10 protein isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.12918.12918.2	4.3491	0.3922	1613.636	1613.8228	1	944.0	76.9%	2	K.DLLSQMHHYNAGVK.Q	2
step03.16146.16146.2	3.4714	0.3217	1413.608	1412.7446	1	634.4	70.8%	1	R.LAAVQLLQFLAPK.I	2
step04.16706.16706.3	4.4215	0.4771	3485.905	3485.9084	1	616.8	29.8%	2	R.AEQISPFFPLVSAHLSSAMTHITEGIQEDSLK.V	3
step03.12770.12770.2	3.2207	0.1876	1543.017	1543.7489	1	1139.0	79.2%	1	K.NFVELISHQQLSK.G	2
step03.9424.9424.3	4.9502	0.5668	2972.209	2971.064	1	955.7	32.0%	2	K.EHANDQQHIQVYENGGSQPNVSSQFR.L	3
step04.19256.19256.2	2.2296	0.1303	2169.571	2169.6157	24	284.9	35.3%	1	R.EPLQVM*QQVLNIISLLWK.L	2
step03.14997.14997.2	6.1094	0.5947	1964.06	1964.212	1	2033.9	79.4%	2	R.NPELSTQLIDIIHTAAAR.A	2
step06.13322.13322.2	2.7431	0.334	1061.527	1061.3055	1	1090.2	87.5%	2	R.LLLQHAPLR.T	2

U	gi\|195972866\|ref\|NP_0	8	18	15.4%	584	58801	5.2	keratin, type I cytoskeletal 10 [Homo sapiens]
U	gi\|40354192\|ref\|NP_00	8	18	15.4%	584	58827	5.2	keratin 10; cytokeratin 10 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.16618.16618.2	4.5374	0.504	3054.282	3054.402	1	906.4	46.2%	3	K.TIDDLKNQILNLTTDNANILLQIDNAR.L	2
step03.15917.15917.3	6.5908	0.5127	3055.535	3054.402	1	2212.4	33.7%	3	K.TIDDLKNQILNLTTDNANILLQIDNAR.L	3
step03.9185.9185.2	2.449	0.2757	1235.264	1235.4144	1	792.3	88.9%	1	R.LKYENEVALR.Q	2
step02.16670.16670.3	3.6658	0.5407	2241.619	2241.5444	1	568.8	38.9%	1	K.ADLEM*QIESLTEELAYLKK.N	3
step02.16768.16768.2	4.4061	0.514	2241.726	2241.5444	1	675.9	55.6%	1	K.ADLEM*QIESLTEELAYLKK.N	2
step02.17126.17126.3	5.5376	0.4777	2747.824	2748.0786	1	798.9	40.9%	4	R.YCVQLSQIQAQISALEEQLQQIR.A	3
step03.16535.16535.2	7.1466	0.5874	2749.094	2748.0786	1	1960.3	54.5%	3	R.YCVQLSQIQAQISALEEQLQQIR.A	2
step03.10805.10805.2	3.643	0.3706	1435.565	1435.6105	1	1404.1	85.0%	2	K.IRLENEIQTYR.S	2

U	gi\|21536320\|ref\|NP_65	8	12	15.3%	756	84794	8.8	heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform d [Homo sapiens]
U	gi\|21536326\|ref\|NP_00	8	12	13.6%	856	95739	6.9	heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.16811.16811.2	3.8231	0.4661	2075.554	2076.2961	1	1536.7	61.1%	1	R.SSGYPLTIEGFAYLWSGAR.A	2
step04.12660.12660.2	3.0982	0.3489	1597.016	1595.867	1	490.4	64.3%	1	K.EALGGQALYPHVLVK.N	2
step04.15494.15494.2	5.0713	0.5426	2561.899	2562.8975	1	635.4	50.0%	4	R.AEPYCSVLPGFTFIQHLPLSER.I	2
step04.14464.14464.2	4.8914	0.5225	1905.663	1906.2943	1	1564.6	64.7%	1	K.SKAECEILMMVGLPAAGK.T	2
step05.12263.12263.2	2.5986	0.2487	1168.453	1168.3533	3	438.1	62.5%	1	K.MRPFEGFQR.K	2
step03.9941.9941.2	2.2572	0.0901	1772.872	1774.0027	4	305.2	46.4%	1	R.KAIVICPTDEDLKDR.T	2
step03.5688.5688.2	5.3251	0.4521	2069.751	2070.27	1	1471.5	67.6%	2	K.RTDEEGKDVPDHAVLEMK.A	2
step02.10593.10593.2	5.0118	0.5435	1914.698	1914.0837	1	928.7	62.5%	1	R.TDEEGKDVPDHAVLEMK.A	2

gi|23308577|ref|NP_00

15.2%

533

56651

6.7

D-3-phosphoglycerate dehydrogenase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.10846.10846.2	2.5774	0.244	1563.32	1563.7654	1	543.8	58.3%	1	R.KVLISDSLDPCCR.K	2
*	step03.10533.10533.2	2.3664	0.1782	1427.87	1427.6714	1	666.2	66.7%	1	R.KILQDGGLQVVEK.Q	2
*	step02.13469.13469.2	2.9962	0.1798	900.182	900.1009	1	977.1	93.8%	2	K.TLGILGLGR.I	2
*	step01.7359.7359.2	2.3232	0.3102	1099.643	1100.2506	1	1117.8	80.0%	1	R.GGIVDEGALLR.A	2
*	step04.11714.11715.2	5.7164	0.5548	2048.927	2049.2673	1	1436.9	63.9%	2	R.ALVDHENVISCPHLGASTK.E	2
*	step04.11703.11703.3	4.6994	0.5132	2049.602	2049.2673	1	2305.4	47.2%	2	R.ALVDHENVISCPHLGASTK.E	3
*	step02.15502.15502.2	4.183	0.231	1626.691	1626.916	1	1030.3	66.7%	2	K.NAGNCLSPAVIVGLLK.E	2

gi|5032007|ref|NP_005

15.2%

322

34911

6.4

transcriptional activator protein Pur-alpha [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13834.13834.2	5.6514	0.6313	2311.98	2312.6106	1	1137.7	63.6%	2	R.GPGLGSTQGQTIALPAQGLIEFR.D	2
*	step02.12512.12512.3	5.0221	0.4397	2891.166	2891.0906	1	920.3	29.0%	2	K.LIDDYGVEEEPAELPEGTSLTVDNKR.F	3

gi|123173772|ref|NP_6

15.2%

289

31382

7.4

tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.13631.13631.2	3.5458	0.4046	1413.692	1413.6064	1	1025.2	79.2%	2	R.HSVDLIGRPFGSK.V	2
*	step04.17597.17597.3	7.8773	0.4588	3280.672	3280.6357	1	2745.2	37.5%	6	R.SGFGVSHVADAVFLDIPSPWEAVGHAWDALK.V	3

gi|13994259|ref|NP_11

15.1%

430

48006

9.9

28S ribosomal protein S5, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16782.16782.2	3.5535	0.5357	1636.208	1635.9962	1	774.1	76.9%	2	R.YGFLWPGLNVPLMK.N	2
*	step03.15143.15143.2	2.2677	0.1886	1651.375	1651.9956	1	592.6	65.4%	1	R.YGFLWPGLNVPLM*K.N	2
*	step03.5134.5134.2	2.3595	0.4125	1947.769	1949.1329	1	312.3	56.7%	1	R.SKEEQEKVEADMIQQR.E	2
*	step03.12628.12628.2	3.4896	0.4985	1646.551	1646.7845	1	850.8	79.2%	2	R.YEDHTIFHDISLR.F	2
*	step03.12636.12636.3	3.7522	0.4927	1646.991	1646.7845	1	1396.1	52.1%	1	R.YEDHTIFHDISLR.F	3
*	step04.10604.10604.1	1.9388	0.1942	922.96	923.0946	6	388.0	57.1%	1	K.GLHVVEIR.E	1
*	step04.10614.10614.2	2.4455	0.3463	923.13	923.0946	1	628.5	78.6%	1	K.GLHVVEIR.E	2
*	step06.14803.14803.2	4.8383	0.4709	2428.149	2428.8093	1	846.5	50.0%	1	K.GLHVVEIREECGPLPIVVASPR.G	2
*	step06.14779.14779.3	6.1503	0.5938	2429.808	2428.8093	1	2391.6	47.6%	2	K.GLHVVEIREECGPLPIVVASPR.G	3

gi|4503515|ref|NP_003

15.1%

352

39930

6.5

eukaryotic translation initiation factor 3 subunit H [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.15560.15560.2	4.8688	0.4182	1726.751	1727.0209	1	1641.2	84.6%	3	K.NSHLINVLMWELEK.K	2
*	step04.14820.14820.2	3.8944	0.3624	1742.691	1743.0203	1	1574.7	80.8%	2	K.NSHLINVLM*WELEK.K	2
*	step05.15997.15997.2	5.0654	0.38	1856.116	1855.1938	1	1410.2	78.6%	1	K.NSHLINVLMWELEKK.S	2
*	step05.13337.13337.2	4.8234	0.6007	2077.718	2078.3152	1	1044.6	60.5%	2	K.SAVADKHELLSLASSNHLGK.N	2
*	step02.16415.16415.2	5.2104	0.5714	2147.535	2148.4905	1	2206.0	73.5%	2	K.NLQLLMDRVDEMSQDIVK.Y	2
*	step02.16406.16406.3	4.7708	0.1992	2148.707	2148.4905	1	2818.1	50.0%	2	K.NLQLLMDRVDEMSQDIVK.Y	3

U	gi\|261399877\|ref\|NP_0	4	9	15.0%	499	54804	7.7	T-complex protein 1 subunit eta isoform d [Homo sapiens]
U	gi\|5453607\|ref\|NP_006	4	9	13.8%	543	59367	7.6	T-complex protein 1 subunit eta isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.10355.10355.2	2.2374	0.43	1063.709	1063.275	2	1090.5	83.3%	1	K.LLDVVHPAAK.T	2
step02.18358.18358.2	4.5301	0.2613	1851.325	1851.2854	1	2851.3	80.0%	1	K.M*VVDAVMMLDDLLQLK.M	2 2
step03.15945.15945.3	5.5004	0.5068	2893.014	2893.196	1	806.5	34.8%	2	R.VHTVEDYQAIVDAEWNILYDKLEK.I	3 3 3
step03.17420.17420.3	5.5725	0.4804	2658.111	2657.9954	1	1238.5	35.4%	5	R.INALTAASEAACLIVSVDETIKNPR.S	3 3 3

Similarities: gi|58331185|ref|NP_00(2:2)
gi|261399875|ref|NP_0(3:1)

gi|9506931|ref|NP_061

14.8%

547

61590

9.3

probable ATP-dependent RNA helicase DDX56 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13791.13791.2	5.1805	0.5531	2168.893	2169.5093	1	1576.3	66.7%	1	R.LLQAVTDLGWSRPTLIQEK.A	2
*	step06.15402.15402.2	3.4452	0.4107	1727.704	1728.0951	1	835.5	75.0%	2	K.TAAYAIPM*LQLLLHR.K	2
*	step03.10782.10782.2	4.4746	0.5538	1699.429	1699.009	1	1126.3	80.0%	1	R.AVLMEKPDVVVGTPSR.I	2
*	step06.15911.15911.2	5.3878	0.5437	2297.938	2296.6528	1	1046.9	57.5%	5	R.ANNPGIVLTFVLPTEQFHLGK.I	2
*	step03.13342.13342.2	2.9283	0.3555	1205.603	1204.4452	1	651.9	83.3%	3	R.GPILLPYQFR.M	2

gi|12232469|ref|NP_07

14.8%

391

43993

6.1

protein RMD5 homolog A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.14488.14488.2	4.795	0.2877	1535.85	1534.8071	1	1517.8	86.4%	3	R.LLNEVMVEHFFR.Q	2
*	step05.13733.13733.2	3.1002	0.2193	1511.674	1511.7533	1	805.9	70.8%	2	R.VLRPALEWAVSNR.E	2
*	step05.13714.13714.3	3.7785	0.3469	1511.861	1511.7533	1	1633.2	58.3%	2	R.VLRPALEWAVSNR.E	3
*	step05.12481.12481.2	2.3091	0.1903	1344.399	1344.5027	5	356.2	65.0%	1	K.NFQPFALNHQK.D	2
*	step06.15475.15475.2	4.418	0.4641	1724.119	1723.9854	1	998.7	79.2%	2	K.CWYHSIFACPILR.Q	2
*	step05.10087.10087.2	2.8724	0.3216	1054.746	1055.2496	1	897.3	87.5%	2	K.LVCGHIISR.D	2

U	gi\|47458043\|ref\|NP_99	6	24	14.8%	385	42984	7.2	armadillo repeat-containing protein 8 isoform 3 [Homo sapiens]
U	gi\|47458045\|ref\|NP_05	6	24	14.8%	385	42984	7.2	armadillo repeat-containing protein 8 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.17231.17232.2	5.1136	0.4872	2317.194	2317.7468	1	1266.0	60.0%	4	K.SLLDCHIIPALLQGLLSPDLK.F	2 2
step01.9465.9465.2	3.8196	0.4644	2146.814	2146.383	1	1058.1	55.6%	1	R.VEGAETLAYLIEPDVELQR.I	2 2
step06.17590.17590.2	6.2486	0.443	1922.503	1923.2649	1	2323.3	68.8%	4	R.IASITDHLIAMLADYFK.Y	2 2
step04.18550.18550.3	4.9234	0.3864	1924.387	1923.2649	1	1160.4	42.2%	6	R.IASITDHLIAMLADYFK.Y	3 3
step03.17087.17087.2	5.1862	0.5276	1940.043	1939.2643	1	850.1	65.6%	7	R.IASITDHLIAM*LADYFK.Y	2 2
step04.17042.17042.3	4.127	0.4409	1940.081	1939.2643	1	1033.5	42.2%	2	R.IASITDHLIAM*LADYFK.Y	3 3

Similarities: gi|32526896|ref|NP_05(6:0)

gi|4503987|ref|NP_003

14.8%

318

35964

7.1

gamma-glutamyl hydrolase precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.14628.14628.2	3.1827	0.361	1141.668	1141.4955	1	853.5	88.9%	2	K.KPIIGILMQK.C	2
*	step06.13816.13816.2	2.9985	0.4212	1157.504	1157.4949	1	645.3	83.3%	2	K.KPIIGILM*QK.C	2
*	step05.19060.19060.3	3.9233	0.2653	2761.827	2762.2185	1	543.1	31.5%	2	R.MFQNFPTELLLSLAVEPLTANFHK.W	3
*	step05.18536.18538.3	5.8125	0.4338	2778.156	2778.218	1	873.5	34.8%	3	R.M*FQNFPTELLLSLAVEPLTANFHK.W	3
*	step05.18548.18548.2	5.6521	0.4593	2778.758	2778.218	1	813.9	47.8%	2	R.M*FQNFPTELLLSLAVEPLTANFHK.W	2
*	step03.8307.8307.2	3.5791	0.3859	1336.395	1336.4789	1	1152.1	83.3%	2	K.NLDGISHAPNAVK.T	2

U	gi\|14165435\|ref\|NP_11	5	8	14.7%	463	50976	5.5	heterogeneous nuclear ribonucleoprotein K isoform b [Homo sapiens]
U	gi\|14165439\|ref\|NP_00	5	8	14.7%	464	51028	5.3	heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
U	gi\|14165437\|ref\|NP_11	5	8	14.7%	464	51028	5.3	heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.5152.5152.2	4.152	0.4299	1737.447	1736.888	1	660.5	73.1%	2	K.RPAEDMEEEQAFKR.S	2
step03.16692.16692.2	4.8384	0.4984	1844.144	1844.1825	1	1438.6	68.8%	1	R.ILSISADIETIGEILKK.I	2
step05.14033.14033.2	4.2601	0.476	1519.604	1519.8568	1	2183.9	78.6%	3	R.LLIHQSLAGGIIGVK.G	2
step03.7518.7518.2	2.2353	0.3287	1550.359	1550.6421	1	411.7	59.1%	1	K.LFQECCPHSTDR.V	2
step04.9069.9069.2	2.6732	0.3594	1054.429	1054.2682	1	1002.4	83.3%	1	R.VVLIGGKPDR.V	2

gi|117676403|ref|NP_0

14.7%

381

43665

9.8

KRR1 small subunit processome component homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13076.13076.3	3.7895	0.1208	3213.466	3213.4998	139	346.0	23.1%	1	R.NQKPKPENQDESELLTVPDGWKEPAFSK.E	3
*	step04.13139.13139.2	2.6842	0.4297	1266.377	1266.5133	1	670.2	83.3%	2	K.KTFDPYIIIR.A	2
*	step02.14578.14578.2	2.4304	0.3077	1933.889	1933.2133	1	513.8	47.1%	1	K.LGALTAEEIALKMEADEK.K	2

U	gi\|16306492\|ref\|NP_20	2	3	14.6%	240	27503	7.1	cell division protein kinase 1 isoform 2 [Homo sapiens]
U	gi\|4502709\|ref\|NP_001	2	3	11.8%	297	34095	8.4	cell division protein kinase 1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.18808.18808.2	2.7074	0.3006	2213.897	2213.5142	1	436.3	36.8%	1	R.YSTPVDIWSIGTIFAELATK.K	2
	step05.14761.14761.2	3.5095	0.3969	1802.646	1803.0109	1	1677.5	78.6%	2	K.KPLFHGDSEIDQLFR.I	2

gi|57863269|ref|NP_05

758

84428

9.8

ribosomal RNA processing protein 1 homolog B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.15215.15215.2	3.929	0.5579	1640.785	1640.8599	1	1670.4	87.5%	1	R.FHFIDIYLDELSK.V	2
*	step06.10574.10574.2	4.0862	0.4821	2207.014	2207.3516	1	1378.8	62.5%	4	K.HHLQPENPGPGGAAPSLEQNR.G	2
*	step06.11414.11414.3	4.2374	0.4141	2207.313	2207.3516	1	850.1	38.8%	4	K.HHLQPENPGPGGAAPSLEQNR.G	3
*	step03.5624.5624.3	3.7739	0.5191	2905.791	2905.0608	1	741.1	35.7%	1	R.VAEPGAEATSSTGEESGSEHPPAVPMHNK.R	3
*	step05.11989.11989.2	4.6886	0.4362	1642.788	1642.8723	1	1607.2	83.3%	2	K.KAGPGSLELCGLPSQK.T	2
*	step02.11331.11331.2	2.2875	0.2547	1514.904	1514.6993	1	642.9	57.1%	1	K.AGPGSLELCGLPSQK.T	2
*	step05.9526.9526.2	4.0043	0.3978	1605.425	1605.7771	1	776.3	70.0%	6	K.SSTATHPPGPAVQLNK.T	2
*	step05.12508.12508.2	3.612	0.3902	1678.825	1678.9559	1	596.2	67.9%	2	R.VAFDPEQKPLHGVLK.T	2

gi|20149594|ref|NP_03

724

83264

5.0

heat shock protein HSP 90-beta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.7716.7716.2	3.7006	0.4473	1244.162	1243.4349	1	1365.0	81.8%	2	K.ADLINNLGTIAK.S	2 2
*	step06.16379.16379.2	2.5408	0.2612	1938.717	1938.2578	1	385.5	53.3%	3	K.KHSQFIGYPITLYLEK.E	2
*	step04.14620.14620.3	4.0844	0.464	1810.69	1810.0848	1	1698.2	55.4%	2	K.HSQFIGYPITLYLEK.E	3
	step02.12602.12602.2	4.2314	0.4331	1528.5	1528.648	1	1081.1	79.2%	2	K.SLTNDWEDHLAVK.H	2 2
	step03.11740.11740.2	2.3504	0.3534	1349.408	1349.4761	1	429.5	65.0%	1	K.HFSVEGQLEFR.A	2 2
*	step03.12801.12801.2	2.6637	0.1629	1237.971	1237.3889	1	817.4	77.8%	1	R.RAPFDLFENK.K	2
*	step05.13679.13679.2	2.2345	0.1621	1365.508	1365.5619	5	549.8	55.0%	1	R.RAPFDLFENKK.K	2
2	step01.7557.7557.2	3.4879	0.2795	1514.291	1514.6627	1	1400.8	80.8%	2	R.GVVDSEDLPLNISR.E	2 2
*	step04.12330.12330.2	3.0723	0.1976	1471.086	1470.4379	12	278.6	43.2%	1	K.EFDGKS#LVS#VTK.E	2
*	step05.13495.13495.2	5.4898	0.3757	1912.814	1912.182	1	1218.9	73.3%	4	K.KHLEINPDHPIVETLR.Q	2
*	step03.11901.11901.3	3.7611	0.4189	1784.669	1784.009	1	1945.7	55.4%	1	K.HLEINPDHPIVETLR.Q	3

Similarities: gi|153792590|ref|NP_0(4:7)

gi|58331185|ref|NP_00

339

37499

6.4

T-complex protein 1 subunit eta isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.15945.15945.3	5.5004	0.5068	2893.014	2893.196	1	806.5	34.8%	2	R.VHTVEDYQAIVDAEWNILYDKLEK.I	3 3 3
	step03.17420.17420.3	5.5725	0.4804	2658.111	2657.9954	1	1238.5	35.4%	5	R.INALTAASEAACLIVSVDETIKNPR.S	3 3 3

Similarities: gi|261399877|ref|NP_0(2:0)
gi|261399875|ref|NP_0(2:0)

U	gi\|28557709\|ref\|NP_78	3	4	14.5%	318	34839	6.4	ribose-phosphate pyrophosphokinase 3 [Homo sapiens]
U	gi\|4506127\|ref\|NP_002	3	4	14.5%	318	34834	7.0	ribose-phosphate pyrophosphokinase 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.19862.19862.2	2.3655	0.2296	1593.253	1594.496	1	439.7	37.5%	1	K.IFSGS#S#HQDLSQK.I	2
step06.15208.15208.2	5.1334	0.5566	1802.822	1803.097	1	2745.1	87.5%	2	R.VYAILTHGIFSGPAISR.I	2 2
step04.14682.14682.2	3.2158	0.5199	1787.593	1787.953	1	826.6	73.3%	1	R.THNGESVSYLFSHVPL.-	2 2

Similarities: gi|4506129|ref|NP_002(2:1)

gi|4506629|ref|NP_000

159

17752

11.7

60S ribosomal protein L29 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.9088.9088.2	2.7152	0.5192	913.391	913.09814	1	680.0	85.7%	2	R.LAYIAHPK.L	2
*	step01.5175.5175.2	3.7215	0.3966	1378.513	1378.559	1	940.6	78.6%	2	K.AQAAAPASVPAQAPK.R	2

gi|109948283|ref|NP_0

14.4%

648

73584

9.6

KIAA0020 protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.20087.20087.2	2.7705	0.1001	1492.909	1492.4484	46	261.4	40.0%	1	K.ELKQS#RQLS#DK.T	2
*	step03.10224.10224.2	5.0147	0.5363	1928.767	1929.1165	1	1342.6	71.4%	1	R.VIQCYIQYGNEEQRK.Q	2
*	step05.13805.13805.2	2.7258	0.3068	1784.244	1783.1276	1	411.8	60.7%	2	K.FLM*YGSKPQIAEIIR.S	2
*	step06.15186.15186.2	3.6903	0.4346	1202.173	1202.5139	1	1927.2	94.4%	2	R.KVLLYLLSPR.D	2
*	step02.16709.16709.2	3.3117	0.3226	2826.895	2826.1912	1	459.9	31.2%	1	R.ELLESISPALLSYLQEHAQEVVLDK.S	2
*	step05.12659.12659.2	4.188	0.44	1837.021	1837.0719	1	1469.4	65.6%	2	K.DGELHIAEHPAGHLVLK.W	2

gi|88758580|ref|NP_11

14.4%

520

58147

10.3

cyclin-L2 isoform A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.16095.16095.2	5.4625	0.4834	2333.999	2333.7031	1	1147.0	55.3%	2	R.LYSGVLITLENCLLPDDKLR.F	2 2
	step02.16521.16521.2	4.8566	0.2797	1613.655	1612.9324	1	2096.1	78.6%	2	R.VVGCELIQAAGILLR.L	2 2
	step06.13895.13895.2	3.3811	0.4246	1269.568	1269.4805	1	1108.9	83.3%	2	R.IRDVINVFHR.L	2 2
	step06.14610.14610.2	3.596	0.2797	1885.041	1884.2516	1	792.8	60.0%	4	K.KKPVPLLLDQDYVNLK.N	2 2
*	step04.11985.11985.2	2.8381	0.2298	1626.008	1625.8483	1	712.0	61.5%	2	R.KKVDLTHLEGEVEK.R	2

Similarities: gi|88758578|ref|NP_00(4:1)

gi|223468571|ref|NP_0

14.4%

153

17781

9.7

39S ribosomal protein L23, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15444.15444.2	2.6418	0.2867	2562.741	2563.8953	1	526.3	42.9%	2	R.TNFFIQLVRPGVAQPEDTVQFR.I	2
*	step05.15442.15442.3	4.4789	0.3591	2563.788	2563.8953	1	1782.3	42.9%	1	R.TNFFIQLVRPGVAQPEDTVQFR.I	3

gi|261399875|ref|NP_0

456

50352

7.9

T-complex protein 1 subunit eta isoform c [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.18358.18358.2	4.5301	0.2613	1851.325	1851.2854	1	2851.3	80.0%	1	K.M*VVDAVMMLDDLLQLK.M	2 2
step03.15945.15945.3	5.5004	0.5068	2893.014	2893.196	1	806.5	34.8%	2	R.VHTVEDYQAIVDAEWNILYDKLEK.I	3 3 3
step03.17420.17420.3	5.5725	0.4804	2658.111	2657.9954	1	1238.5	35.4%	5	R.INALTAASEAACLIVSVDETIKNPR.S	3 3 3

Similarities: gi|261399877|ref|NP_0(3:0)
gi|58331185|ref|NP_00(2:1)

gi|55770868|ref|NP_06

434

48488

5.3

putative tubulin beta-4q chain [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.8104.8104.2	4.3273	0.4644	1603.457	1602.835	1	1180.5	82.1%	4	R.AVLVDLEPGTMDSVR.S	2 2 2 2 2
	step01.7456.7456.2	2.6574	0.0848	1618.233	1618.8344	1	576.7	64.3%	1	R.AVLVDLEPGTM*DSVR.S	2 2 2 2 2
2	step03.13604.13604.3	7.6194	0.4839	3442.817	3441.7993	1	4047.8	40.6%	4	R.KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISK.I	3 3 3 3 3 3 3
2	step02.14675.14675.2	3.7336	0.5747	3314.255	3313.6262	1	330.1	30.6%	4	K.EAESCDCLQGFQLTHSLGGGTGSGMGTLLISK.I	2 2 2 2 2 2 2
2	step02.14655.14655.3	7.6733	0.6098	3314.864	3313.6262	1	2480.0	33.1%	4	K.EAESCDCLQGFQLTHSLGGGTGSGMGTLLISK.I	3 3 3 3 3 3 3
	step03.16851.16851.2	3.2059	0.2969	1622.719	1621.9296	1	464.9	57.7%	2	R.LHFFMPGFAPLTSR.G	2 2 2 2 2 2 2 2

gi|83700235|ref|NP_00

407

46402

5.5

eukaryotic initiation factor 4A-II [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.12188.12188.2	5.179	0.522	1828.616	1829.0483	1	1503.7	83.3%	3	R.GIYAYGFEKPSAIQQR.A	2 2 2
*	step04.10198.10198.2	3.5465	0.3927	1545.253	1545.7681	1	1324.0	71.4%	2	K.LQAEAPHIVVGTPGR.V	2
	step01.9410.9410.2	4.7584	0.4915	1557.484	1556.7865	1	2396.4	87.5%	4	K.MFVLDEADEMLSR.G	2 2
*2	step03.6272.6272.2	3.4023	0.373	1606.408	1606.805	1	487.6	69.2%	2	R.KGVAINFVTEEDKR.I	2 2

Similarities: gi|4503529|ref|NP_001(3:1)
gi|7661920|ref|NP_055(1:3)

U	gi\|213688375\|ref\|NP_0	4	7	14.3%	377	42009	5.4	actin, aortic smooth muscle [Homo sapiens]
U	gi\|4501889\|ref\|NP_001	4	7	14.4%	376	41877	5.5	actin, gamma-enteric smooth muscle propeptide [Homo sapiens]
U	gi\|4501883\|ref\|NP_001	4	7	14.3%	377	42009	5.4	actin, aortic smooth muscle [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.13756.13756.2	3.0851	0.3071	1199.462	1199.4302	2	621.9	75.0%	2	R.AVFPSIVGRPR.H	2 2 2 2 2
step04.9354.9354.2	2.4427	0.2771	1172.291	1172.4069	1	663.4	70.0%	1	R.HQGVMVGMGQK.D	2 2 2 2
step03.12357.12357.2	3.2903	0.2829	1961.381	1962.1718	1	895.2	60.0%	2	K.YPIEHGIITNWDDMEK.I	2 2
step01.8051.8051.2	4.7689	0.504	1792.318	1791.94	1	1550.1	80.0%	2	K.SYELPDGQVITIGNER.F	2 2 2 2 2

gi|310131873|ref|XP_0

140

15458

11.9

PREDICTED: hypothetical protein LOC100510459 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.15022.15022.2	2.4588	0.0823	2072.713	2073.0115	153	221.1	24.7%	1	R.PS#CPLAS#PIADVPPS#PAR.P	2
*	step03.9936.9936.2	2.3748	0.2422	2247.37	2246.3337	1	189.2	31.6%	1	R.PS#CPLAS#PIADVPPSPARPR.T	2

gi|13676857|ref|NP_06

14.2%

639

70021

5.7

heat shock-related 70 kDa protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step01.5757.5757.2	3.6889	0.2971	1229.229	1229.3252	1	1555.9	90.0%	1	K.VEIIANDQGNR.T	2 2 2 2 2 2 2
	step01.6542.6542.2	2.9268	0.5061	1488.301	1488.5806	1	775.6	79.2%	1	R.TTPSYVAFTDTER.L	2 2 2 2 2 2
	step01.8145.8145.2	5.2752	0.472	1661.552	1660.8926	1	1836.1	86.7%	4	R.IINEPTAAAIAYGLDK.K	2 2 2 2 2
	step03.11883.11883.2	5.3168	0.5374	1789.085	1789.0656	1	1603.8	81.2%	2	R.IINEPTAAAIAYGLDKK.G	2 2 2
	step02.5915.5915.2	4.8481	0.5156	1693.419	1692.6823	1	1890.6	76.7%	2	K.STAGDTHLGGEDFDNR.M	2 2 2
	step03.13024.13025.1	2.0804	0.2471	1481.382	1481.6377	1	173.4	63.6%	1	R.ARFEELNADLFR.G	1 1 1
	step03.12962.12962.2	3.7232	0.3969	1482.623	1481.6377	1	926.6	81.8%	3	R.ARFEELNADLFR.G	2 2 2
	step01.8529.8529.2	3.5339	0.3268	1255.231	1254.373	1	1220.5	83.3%	4	R.FEELNADLFR.G	2 2 2
	step01.8390.8390.2	3.1065	0.3959	1082.316	1082.2336	1	727.7	87.5%	6	K.LLQDFFNGK.E	2 2 2 2
	step02.13808.13808.2	4.57	0.2893	1567.206	1566.7825	1	1740.0	83.3%	3	K.LLQDFFNGKELNK.S	2 2 2 2
	step03.6900.6900.2	2.3231	0.3762	1017.931	1018.14954	2	570.2	68.8%	2	K.ITITNDKGR.L	2 2 2 2 2

gi|14702171|ref|NP_11

14.2%

275

31441

4.9

DNA-directed RNA polymerase II subunit RPB3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.16386.16386.2	4.9997	0.6009	2159.573	2159.5112	1	1122.9	66.7%	2	R.LGLIPLISDDIVDKLQYSR.D	2
*	step02.18515.18516.2	2.2126	0.1987	2396.724	2395.4924	3	221.5	25.0%	1	R.HVTSRDLISNSPRVIPVT#S#R.N	2

gi|222144293|ref|NP_0

14.1%

538

60222

5.0

importin subunit alpha-1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step04.8004.8004.2	2.3688	0.143	1359.323	1358.526	13	214.5	50.0%	1	R.EEEGLQLRKQK.R	2 2 2
	step04.12249.12249.2	2.261	0.1382	939.509	939.1356	1	514.6	91.7%	1	R.FVEFLKR.K	2 2
	step05.13998.13998.2	2.4138	0.2387	1531.078	1531.8048	1	526.8	63.6%	2	R.RLVELLMHNDYK.V	2 2 2
*	step04.19553.19553.3	4.5133	0.4076	2774.533	2774.2073	1	1553.1	35.4%	4	R.AQIQTVIDANIFPALISILQTAEFR.T	3
*	step03.16839.16839.2	4.9951	0.4438	2469.992	2468.922	1	1040.5	55.0%	3	K.YLVELGCIKPLCDLLTVMDSK.I	2

Similarities: gi|6912478|ref|NP_036(3:2)
gi|39812229|ref|NP_00(2:3)

gi|7706573|ref|NP_057

14.1%

348

39608

5.1

45 kDa calcium-binding protein isoform 1 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.15028.15028.3	4.9168	0.4116	2544.762	2544.7542	1	1147.1	35.0%	1	R.LNEELKVDEETQEVLENLKDR.W	3 3
	step03.17816.17816.3	3.7621	0.2787	3329.764	3329.619	11	506.1	25.9%	1	R.WYQADSPPADLLLTEEEFLSFLHPEHSR.G	3 3

Similarities: gi|18699732|ref|NP_05(2:0)

gi|54112117|ref|NP_03

14.0%

1304

145830

7.1

splicing factor 3B subunit 1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.9669.9669.2	2.6156	0.3827	1832.49	1832.9971	1	675.2	55.9%	1	K.IWDPTPSHTPAGAATPGR.G	2
*	step06.14306.14306.3	4.3223	0.4049	2390.287	2390.725	1	1117.9	38.1%	1	R.KLTATPTPLGGMTGFHMQTEDR.T	3
*	step02.17852.17852.3	5.9886	0.4507	2816.732	2817.2095	1	2289.2	41.7%	2	R.EFGAGPLFNQILPLLMSPTLEDQER.H	3
*	step03.17669.17669.3	4.3811	0.3759	1915.597	1915.3503	1	1745.2	48.6%	2	R.AFAVVASALGIPSLLPFLK.A	3
*	step03.17630.17630.2	3.6604	0.3889	1915.649	1915.3503	1	875.6	55.6%	6	R.AFAVVASALGIPSLLPFLK.A	2
*	step02.15767.15767.2	4.4543	0.2881	1838.091	1838.0518	1	1744.8	73.3%	1	R.SLVEIIEHGLVDEQQK.V	2
*	step05.19420.19420.3	3.9912	0.4945	3248.157	3248.7566	1	604.8	23.3%	1	R.TISALAIAALAEAATPYGIESFDSVLKPLWK.G	3
*	step02.16691.16691.2	4.0187	0.2481	1279.509	1278.5558	1	957.7	88.9%	2	R.ICFELLELLK.A	2
*	step04.11747.11747.2	2.605	0.2816	1341.491	1341.5403	1	1030.9	72.7%	1	R.RATVNTFGYIAK.A	2
*	step06.16460.16462.2	4.921	0.4497	1689.865	1689.9803	1	2012.4	80.0%	1	K.AIGPHDVLATLLNNLK.V	2
*	step06.15144.15144.2	4.5223	0.5103	1734.673	1735.0397	1	1854.3	84.6%	2	R.MLQYCLQGLFHPAR.K	2
*	step06.14878.14878.2	4.1794	0.4986	1751.551	1751.0391	1	906.9	80.8%	2	R.M*LQYCLQGLFHPAR.K	2

gi|51972214|ref|NP_00

14.0%

250

27084

8.9

protein lin-28 homolog B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14981.14981.2	3.1105	0.2962	1868.773	1868.0796	1	480.1	56.2%	1	R.EGSPLDIPVDVFVHQSK.L	2
*	step03.8110.8110.2	2.9732	0.4284	1883.655	1883.9927	1	275.9	52.9%	2	R.EVGGGHGCTSPPFPQEAR.A	2

gi|310127973|ref|XP_0

14.0%

186

20454

9.4

PREDICTED: u2 small nuclear ribonucleoprotein A'-like, partial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.9138.9138.2	2.689	0.2197	1346.644	1346.5137	1	558.8	62.5%	1	K.TFNPGAGLPTDKK.K	2 2
	step03.6090.6090.2	3.89	0.4116	1255.731	1255.4026	1	1715.8	83.3%	2	K.KGGPSPGDVEAIK.N	2 2

Similarities: gi|50593002|ref|NP_00(2:0)

gi|38327634|ref|NP_00

13.9%

670

75407

9.5

ATP-dependent RNA helicase DDX18 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.10938.10938.2	2.5256	0.0954	1040.937	1041.2295	3	493.6	68.8%	1	K.SIRPLLEGR.D	2
*	step03.17462.17462.2	4.3182	0.4428	1529.004	1527.9156	1	921.2	76.9%	9	K.TLAFLIPAVELIVK.L	2
*	step04.12506.12506.2	3.6496	0.38	1695.595	1695.9872	1	1215.4	73.1%	2	R.LLDHMQNTPGFMYK.N	2
*	step04.11848.11848.2	3.0142	0.084	1711.481	1711.9866	1	351.9	61.5%	1	R.LLDHM*QNTPGFMYK.N	2
*	step04.10028.10028.2	2.625	0.0942	1727.661	1727.986	3	299.5	57.7%	1	R.LLDHMQNTPGFMYK.N	2
*	step02.15838.15838.2	4.4464	0.3089	1774.913	1775.0787	1	1627.4	78.6%	1	R.ILDVGFEEELKQIIK.L	2
*	step02.4398.4398.2	2.2551	0.1103	1899.763	1900.0563	25	306.7	31.1%	1	R.IS#LKKEPLYVGVDDDK.A	2
*	step02.15603.15603.3	3.9312	0.3507	3011.609	3011.2896	1	905.7	38.5%	2	R.GLDIPEVDWIVQYDPPDDPKEYIHR.V	3

gi|4506609|ref|NP_000

13.8%

196

23466

11.5

60S ribosomal protein L19 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.10866.10866.2	5.2276	0.4315	2073.473	2072.2244	1	625.7	61.8%	1	K.KVWLDPNETNEIANANSR.Q	2
*	step01.7252.7252.2	5.0938	0.5542	1943.628	1944.0514	1	2207.3	84.4%	2	K.VWLDPNETNEIANANSR.Q	2
*	step06.13640.13640.2	2.3371	0.3593	1192.504	1192.4148	1	863.6	81.2%	2	R.HMYHSLYLK.V	2

gi|57863257|ref|NP_11

13.7%

556

60344

6.1

T-complex protein 1 subunit alpha isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.8130.8130.2	3.0868	0.3396	1107.593	1107.2847	1	1329.3	83.3%	1	K.LLEVEHPAAK.V	2
*	step05.11328.11328.1	2.3857	0.2523	1230.311	1230.398	1	307.4	65.0%	2	K.IHPTSVISGYR.L	1
*	step05.11296.11296.2	2.4641	0.4496	1230.548	1230.398	1	376.1	80.0%	2	K.IHPTSVISGYR.L	2
	step01.7757.7757.2	2.2675	0.3036	1195.371	1195.3837	1	775.2	72.2%	1	K.IACLDFSLQK.T	2 2
	step02.17158.17158.3	3.7724	0.447	2699.962	2701.0056	1	667.5	32.7%	1	K.SVVPGGGAVEAALSIYLENYATSMGSR.E	3 3
	step02.17196.17196.2	5.7145	0.6536	2701.197	2701.0056	1	1283.9	51.9%	2	K.SVVPGGGAVEAALSIYLENYATSMGSR.E	2 2
	step02.7829.7829.2	2.5872	0.2659	1930.091	1930.9232	1	510.6	47.1%	1	K.DDKHGSYEDAVHSGALND.-	2 2

Similarities: gi|57863259|ref|NP_00(4:3)

gi|57863259|ref|NP_00

13.7%

401

43886

7.7

T-complex protein 1 subunit alpha isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step01.7757.7757.2	2.2675	0.3036	1195.371	1195.3837	1	775.2	72.2%	1	K.IACLDFSLQK.T	2 2
step02.17158.17158.3	3.7724	0.447	2699.962	2701.0056	1	667.5	32.7%	1	K.SVVPGGGAVEAALSIYLENYATSMGSR.E	3 3
step02.17196.17196.2	5.7145	0.6536	2701.197	2701.0056	1	1283.9	51.9%	2	K.SVVPGGGAVEAALSIYLENYATSMGSR.E	2 2
step02.7829.7829.2	2.5872	0.2659	1930.091	1930.9232	1	510.6	47.1%	1	K.DDKHGSYEDAVHSGALND.-	2 2

Similarities: gi|57863257|ref|NP_11(4:0)

gi|50592992|ref|NP_00

13.7%

380

43658

6.5

nitrogen permease regulator 2-like protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14537.14537.3	3.5345	0.4346	1923.807	1923.1935	1	1307.1	56.7%	1	R.IECIFFSEFHPTLGPK.I	3
*	step02.15009.15009.2	3.8038	0.5001	2279.523	2279.6174	1	948.9	58.3%	3	R.ELFDTVQVYIITKPELQNK.L	2
*	step02.18508.18508.3	3.647	0.4704	1869.897	1870.2467	1	854.1	45.3%	1	K.LVPIMTILLEELNASGR.C	3
*	step02.16530.16530.2	3.999	0.4461	1885.832	1886.2461	1	1260.6	71.9%	3	K.LVPIM*TILLEELNASGR.C	2

gi|50301240|ref|NP_00

13.6%

885

100831

8.5

exosome component 10 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.11259.11259.2	2.4544	0.1608	1504.142	1503.6815	1	387.4	62.5%	1	R.EKIDNSNTPFLPK.I	2 2
	step03.14070.14070.3	4.6955	0.3323	2844.758	2844.0916	6	741.0	30.4%	1	R.ERPQDRPEDLDVPPALADFIHQQR.T	3 3
	step02.13612.13612.2	3.0285	0.3937	1559.963	1559.7004	1	1015.4	68.2%	1	R.DDTHYLLYIYDK.M	2 2
	step03.14356.14356.2	3.7857	0.3694	2034.647	2035.3271	1	914.1	76.7%	2	K.FIKPIFTDESYLELYR.K	2 2
	step05.14365.14365.3	6.8643	0.4359	3430.978	3430.8044	1	1465.5	32.3%	4	R.LENVLFGPHDCSHAPPDGYPIIPTSGSVPVQK.Q	3 3
*	step06.14274.14274.2	2.723	0.2962	1059.372	1058.282	1	716.4	93.8%	2	R.MFLPSLGHR.A	2
*	step06.13512.13512.2	2.6494	0.1286	1074.239	1074.2814	1	514.8	81.2%	2	R.M*FLPSLGHR.A	2
	step06.81.81.2	2.3333	0.1139	1619.63	1619.7158	51	188.8	42.3%	1	R.ATSDPRTTEQKQEK.K	2 2

Similarities: gi|4505917|ref|NP_002(6:2)

gi|47419936|ref|NP_00

13.6%

655

74325

6.2

serine/threonine-protein kinase SRPK1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11880.11880.2	3.6967	0.437	1637.057	1635.7137	1	1189.1	73.1%	2	K.SAEHYTETALDEIR.L	2
*	step04.14596.14596.2	4.2497	0.4188	1769.785	1770.0654	1	1462.4	78.6%	1	K.IIQQVLQGLDYLHTK.C	2
*	step04.14396.14396.2	5.9159	0.5204	2509.251	2509.8857	1	1820.7	70.0%	2	R.IIHTDIKPENILLSVNEQYIR.R	2
*	step04.14374.14374.3	5.0894	0.4106	2509.908	2509.8857	1	2410.8	48.8%	2	R.IIHTDIKPENILLSVNEQYIR.R	3
*	step05.16436.16436.2	2.6248	0.4255	1559.018	1558.8882	1	528.7	75.0%	1	K.LKPWGLFEVLVEK.Y	2
*	step03.18663.18663.3	4.5097	0.5424	3113.469	3114.5164	1	1145.3	33.0%	3	K.YEWSQEEAAGFTDFLLPMLELIPEKR.A	3

U	gi\|237649012\|ref\|NP_0	5	10	13.6%	361	40684	10.0	probable rRNA-processing protein EBP2 isoform 1 [Homo sapiens]
U	gi\|237649015\|ref\|NP_0	5	10	16.0%	306	34852	10.1	probable rRNA-processing protein EBP2 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.14326.14326.2	3.9105	0.5152	1535.69	1534.8682	1	695.6	82.1%	3	R.GLLKPGLNVVLEGPK.K	2
step06.13711.13711.2	3.8864	0.3317	1754.492	1755.0311	1	696.5	60.7%	1	K.VPTKRPTDYFAEMAK.S	2
step03.11289.11289.2	2.764	0.3176	1329.498	1329.5066	1	1177.6	85.0%	2	K.RPTDYFAEMAK.S	2
step03.12990.12990.2	3.8827	0.5188	2164.702	2165.3914	1	1383.9	61.1%	2	K.GFSDKLDFLEGDQKPLAQR.K	2
step03.12981.12981.3	3.8245	0.5814	2165.454	2165.3914	1	1366.2	43.1%	2	K.GFSDKLDFLEGDQKPLAQR.K	3

gi|110618253|ref|NP_0

13.4%

1230

138620

9.0

DNA-directed RNA polymerase, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.10028.10028.2	5.1107	0.4972	2593.487	2593.752	1	826.9	45.7%	1	K.LSLDVEQAPSGQHSQAQLSGQQQR.L	2
*	step02.17603.17603.2	3.2533	0.3993	1673.418	1673.9264	1	844.4	83.3%	2	R.FSLYPFLCLLDER.E	2
*	step04.9094.9094.2	3.4386	0.4253	1500.514	1500.6443	1	951.8	70.8%	2	R.VSGQVQALQNHYR.K	2
*	step06.15737.15737.2	3.7038	0.4132	2438.912	2439.8774	1	1141.3	52.5%	1	K.LLAEMLVQATQMPCSLDKPHR.S	2
*	step06.15730.15730.3	5.1457	0.5402	2439.895	2439.8774	1	1716.4	42.5%	2	K.LLAEMLVQATQMPCSLDKPHR.S	3
*	step06.14233.14233.3	4.735	0.5412	2471.636	2471.8762	1	1262.6	37.5%	1	K.LLAEMLVQATQMPCSLDKPHR.S	3
*	step06.15190.15190.2	2.5555	0.3558	1493.648	1493.7764	1	604.4	86.4%	1	R.LVPVLYHVYSFR.N	2
*	step02.16864.16864.2	3.8174	0.5445	1387.724	1387.692	1	1777.8	81.8%	2	R.VLDLVLQLFQAK.G	2
*	step06.15269.15269.2	2.4917	0.337	1462.218	1462.7028	1	983.0	85.0%	1	R.VFWLPHNMDFR.G	2
*	step06.14569.14569.2	2.6124	0.2535	1478.48	1478.7021	1	629.8	75.0%	1	R.VFWLPHNM*DFR.G	2
*	step05.13724.13724.2	2.312	0.3229	1108.563	1108.359	1	659.5	83.3%	2	K.IHLVNLTGLK.K	2
*	step06.13778.13778.3	6.5	0.5916	3193.527	3193.4285	1	1595.9	37.1%	1	R.ASDPAAYVSHLPVHQDGSCNGLQHYAALGR.D	3
*	step03.16647.16647.2	2.9894	0.4691	2352.953	2353.5735	1	491.3	50.0%	1	R.ELSDFPQEFVWEASHYLVR.Q	2

U	gi\|310115367\|ref\|XP_0	2	6	13.4%	194	23079	8.3	PREDICTED: protein FAM115A-like isoform 1, partial [Homo sapiens]
U	gi\|310115369\|ref\|XP_0	2	6	13.2%	197	23444	8.3	PREDICTED: protein FAM115A-like isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.13472.13472.2	2.8306	0.3925	1221.726	1221.3927	1	534.4	70.0%	2	K.GLWGPVHELGR.N	2 2
	step02.17032.17032.2	3.4479	0.2764	1818.512	1819.0967	1	1013.9	71.4%	4	K.NLAPFFEAWAWPIQK.E	2 2

Similarities: gi|7662276|ref|NP_055(2:0)

gi|24586679|ref|NP_73

13.4%

127

14167

10.3

histone H2B type 1-A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.7906.7906.2	2.4326	0.1083	902.636	902.1168	1	383.1	85.7%	1	K.KAVVKTQK.K	2
	step02.12620.12620.2	2.4971	0.149	955.528	954.1885	1	597.0	87.5%	1	R.LLLPGELAK.H	2 2 2

Similarities: gi|10800140|ref|NP_06(1:1)
gi|10800138|ref|NP_06(1:1)

gi|22212931|ref|NP_63

13.3%

699

77638

8.1

nucleolar protein 6 gamma isoform [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.14080.14080.2	2.3567	0.1682	2166.223	2166.4192	31	262.5	36.8%	1	R.VPSVPETELTDQAWLPAGVR.V	2 2
step05.10855.10855.2	3.3609	0.3408	1251.704	1251.5018	1	880.4	75.0%	2	R.VPLHQVPYAVK.G	2 2
step05.18673.18674.3	4.6885	0.4918	3259.437	3259.6978	1	1516.2	32.1%	2	R.YNTWVLQDTVLESHLQLLSTILSSAQGLK.D	3 3
step05.18936.18936.3	5.1452	0.481	3498.779	3497.9421	1	823.2	25.8%	3	R.LKLWPELQDNGGDYVSAALGPLTTLLEQGLGAR.L	3 3

Similarities: gi|18644728|ref|NP_07(4:0)

gi|19923403|ref|NP_05

13.3%

293

32789

7.5

exosome complex exonuclease RRP4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.17466.17466.2	2.9456	0.3742	2847.729	2848.117	1	751.2	38.5%	1	R.GFLQEGDLISAEVQAVFSDGAVSLHTR.S	2
*	step03.17418.17418.3	5.4698	0.4997	2847.991	2848.117	1	1360.8	39.4%	5	R.GFLQEGDLISAEVQAVFSDGAVSLHTR.S	3
*	step06.14555.14555.2	3.8429	0.4173	1472.897	1473.74	1	1111.7	81.8%	2	R.LRNCIISLVTQR.M	2

U	gi\|16117794\|ref\|NP_05	5	7	13.3%	105	12254	11.6	60S ribosomal protein L36 [Homo sapiens]
U	gi\|16117796\|ref\|NP_37	5	7	13.3%	105	12254	11.6	60S ribosomal protein L36 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.13882.13882.3	4.8412	0.4022	1518.52	1517.7797	1	896.5	52.1%	2	R.KREELSNVLAAMR.K	3
step05.11563.11563.3	4.0505	0.2375	1534.046	1533.779	1	1296.4	52.1%	1	R.KREELSNVLAAM*R.K	3
step06.12364.12364.2	2.5831	0.2371	1661.554	1661.9519	14	120.1	57.7%	1	R.KREELSNVLAAM*RK.A	2
step03.13008.13008.2	3.5936	0.2893	1389.88	1389.6067	1	1072.9	86.4%	2	K.REELSNVLAAMR.K	2
step01.8729.8729.2	2.5814	0.5043	1233.045	1233.4204	1	1227.1	85.0%	1	R.EELSNVLAAMR.K	2

gi|45333883|ref|NP_69

13.2%

674

76138

6.1

kelch repeat and BTB domain-containing protein 6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.18039.18039.3	3.7442	0.1335	2879.421	2880.3564	1	921.1	28.0%	1	K.QLSHMGSIREETLADLTLAQLLAVLR.L	3
	step03.15202.15202.3	5.5496	0.5451	2694.26	2694.0547	1	1202.8	42.9%	2	R.WMHFTEEDQDYLEGLLTKPIVK.K	3 3
	step05.14036.14036.2	2.3651	0.3523	1233.388	1233.4669	1	473.2	72.2%	1	K.EMVIFFGHPR.D	2 2
*	step06.13529.13529.2	2.9432	0.4096	1351.879	1352.558	1	746.5	77.3%	1	K.VPSPLTCLAHTR.T	2
*	step03.13386.13386.2	3.3805	0.412	2319.857	2320.548	1	453.0	52.8%	1	R.TDLWVYKPAQNSWQQLADR.L	2

Similarities: gi|21359972|ref|NP_11(2:3)

gi|21361499|ref|NP_05

574

65010

8.6

sentrin-specific protease 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.11474.11474.2	3.8025	0.4612	2191.5	2192.3652	1	981.9	57.9%	2	K.NHLSPQQGGATPQVPSPCCR.F	2
*	step06.11484.11484.3	3.7619	0.2659	2192.209	2192.3652	1	1583.9	48.7%	1	K.NHLSPQQGGATPQVPSPCCR.F	3
*	step04.7648.7648.2	3.7804	0.3303	2271.602	2272.3452	1	925.9	54.4%	2	K.NHLS#PQQGGATPQVPSPCCR.F	2
*	step04.7636.7636.3	3.7707	0.2967	2271.9	2272.3452	4	630.6	31.6%	1	K.NHLS#PQQGGATPQVPSPCCR.F	3
*	step02.16140.16140.2	4.119	0.5094	1415.661	1415.6841	1	2173.5	80.8%	2	R.LGLLGALMAEDGVR.G	2
*	step06.15230.15230.2	4.8124	0.4437	1547.585	1546.8391	1	2355.0	87.5%	2	R.KGLVLQLIQSYQR.M	2
*	step05.15005.15005.2	3.0647	0.4321	1451.116	1451.6085	1	771.8	80.0%	2	K.VHFFNSFFYDK.L	2
*	step04.13481.13481.2	3.4254	0.4827	1974.879	1976.2448	1	1177.3	68.8%	1	K.HLALSQPFSFTQQDMPK.L	2

gi|7657015|ref|NP_055

505

55210

7.2

hypothetical protein LOC51493 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.10390.10390.2	4.9608	0.592	2131.085	2130.1663	1	499.5	62.5%	2	R.EGYAWAEDKEHCEEYGR.M	2
*	step03.16011.16011.3	3.8158	0.3284	3218.902	3219.549	1	1217.2	27.6%	2	R.GLPQLGTLGAGNHYAEIQVVDEIFNEYAAK.K	3
*	step02.17680.17680.2	5.5416	0.4442	2147.934	2148.4688	1	1663.5	69.4%	3	R.NLDFQDVLDKLADMGIAIR.V	2
*	step02.17693.17693.3	4.6022	0.3674	2148.429	2148.4688	1	1646.4	44.4%	1	R.NLDFQDVLDKLADMGIAIR.V	3

gi|50511943|ref|NP_05

275

29572

8.1

exosome complex exonuclease RRP40 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.12455.12455.2	3.9875	0.5201	1697.647	1697.0144	1	963.5	83.3%	2	R.YVPVKGDHVIGIVTAK.S	2
*	step05.14590.14590.2	6.0297	0.5489	2231.913	2232.527	1	2449.4	71.1%	2	R.NRPNVQVGDLIYGQFVVANK.D	2

gi|7705626|ref|NP_057

137

15345

9.5

28S ribosomal protein S16, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.12430.12430.3	3.5487	0.4718	2018.7	2018.1719	2	538.0	36.8%	1	R.FVEQLGSYDPLPNSHGEK.L	3
*	step02.12438.12438.2	5.5363	0.528	2018.834	2018.1719	1	1156.8	73.5%	2	R.FVEQLGSYDPLPNSHGEK.L	2

gi|56550033|ref|NP_06

13.0%

577

65125

4.8

protein SHQ1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.14380.14380.2	2.3068	0.2127	1205.545	1205.4316	1	552.2	87.5%	2	K.FYAKPYFLR.L	2
*	step04.14994.14994.2	4.2013	0.4475	2213.015	2212.5146	1	407.3	50.0%	1	K.ETPGQHFEGLNM*LTALLAPR.K	2
*	step02.17259.17259.3	5.1898	0.368	2557.086	2556.7637	1	1218.3	42.5%	2	K.FDPDHYLADFFEDEAIEQILK.Y	3
*	step02.17600.17600.3	5.4633	0.4992	2711.318	2712.0432	1	1898.6	41.7%	1	K.AQLGLELEELEAAALLVQEEETALK.A	3

U	gi\|33239451\|ref\|NP_87	2	3	13.0%	261	28769	4.7	proliferating cell nuclear antigen [Homo sapiens]
U	gi\|4505641\|ref\|NP_002	2	3	13.0%	261	28769	4.7	proliferating cell nuclear antigen [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.8668.8668.2	3.232	0.3362	2076.846	2076.2065	1	983.9	47.2%	1	R.AEDNADTLALVFEAPNQEK.V	2
	step02.11944.11944.2	4.5853	0.5392	1586.558	1585.7776	1	1710.2	78.6%	2	R.DLSHIGDAVVISCAK.D	2

U	gi\|19923969\|ref\|NP_61	2	2	13.0%	223	25835	9.5	coiled-coil domain-containing protein 124 [Homo sapiens]
U	gi\|209969700\|ref\|NP_0	2	2	13.0%	223	25835	9.5	coiled-coil domain-containing protein 124 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.5835.5835.2	2.8276	0.1687	2066.906	2067.2249	4	211.3	46.7%	1	K.ELEDAYWKDDDKHVM*R.K	2
	step03.10494.10494.2	2.2695	0.2259	1537.517	1536.6716	1	572.4	62.5%	1	K.SHLEVPLEENVNR.R	2

gi|4505917|ref|NP_002

12.9%

860

98089

8.4

exosome component 10 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.11259.11259.2	2.4544	0.1608	1504.142	1503.6815	1	387.4	62.5%	1	R.EKIDNSNTPFLPK.I	2 2
step03.14070.14070.3	4.6955	0.3323	2844.758	2844.0916	6	741.0	30.4%	1	R.ERPQDRPEDLDVPPALADFIHQQR.T	3 3
step02.13612.13612.2	3.0285	0.3937	1559.963	1559.7004	1	1015.4	68.2%	1	R.DDTHYLLYIYDK.M	2 2
step03.14356.14356.2	3.7857	0.3694	2034.647	2035.3271	1	914.1	76.7%	2	K.FIKPIFTDESYLELYR.K	2 2
step05.14365.14365.3	6.8643	0.4359	3430.978	3430.8044	1	1465.5	32.3%	4	R.LENVLFGPHDCSHAPPDGYPIIPTSGSVPVQK.Q	3 3
step06.81.81.2	2.3333	0.1139	1619.63	1619.7158	51	188.8	42.3%	1	R.ATSDPRTTEQKQEK.K	2 2

Similarities: gi|50301240|ref|NP_00(6:0)

gi|62414289|ref|NP_00

12.9%

466

53652

5.1

vimentin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.11517.11517.2	2.2321	0.2756	1496.74	1496.6506	28	176.3	46.2%	1	R.TYSLGSALRPSTSR.S	2
*	step01.9987.9987.2	5.2462	0.432	2127.569	2127.3367	1	3613.8	77.8%	1	R.LLQDSVDFSLADAINTEFK.N	2
*	step03.13457.13457.2	3.437	0.3951	1534.576	1534.7787	1	1277.5	79.2%	1	R.KVESLQEEIAFLK.K	2
*	step02.11872.11872.2	3.8101	0.3219	1735.642	1735.9648	1	1944.8	84.6%	1	R.LQDEIQNMKEEMAR.H	2

gi|32454741|ref|NP_00

12.9%

418

46441

8.7

serpin H1 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13970.13970.3	6.2164	0.4907	2407.033	2406.681	1	3319.5	46.4%	1	K.AVLSAEQLRDEEVHAGLGELLR.S	3
*	step04.15040.15040.2	4.6964	0.5456	2219.949	2220.5352	1	983.4	55.6%	2	R.TDGALLVNAMFFKPHWDEK.F	2
*	step04.15064.15064.3	4.8481	0.4651	2221.251	2220.5352	1	1298.2	43.1%	2	R.TDGALLVNAMFFKPHWDEK.F	3
*	step05.16122.16122.2	4.4369	0.5371	1638.828	1638.9352	1	1185.0	83.3%	2	K.LFYADHPFIFLVR.D	2

gi|40217847|ref|NP_05

12.8%

2136

244505

6.1

U5 small nuclear ribonucleoprotein 200 kDa helicase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18246.18246.2	3.5012	0.36	2150.886	2151.4045	1	1452.5	61.1%	1	R.ETYEVLLSFIQAALGDQPR.D	2
*	step04.11986.11986.2	2.2798	0.314	1043.701	1043.2438	2	795.0	87.5%	1	R.YHVLVNLGK.K	2
	step05.14394.14394.3	3.8734	0.2098	2923.4	2922.3237	1	859.1	32.0%	1	K.GYEEVHVPALKPKPFGSEEQLLPVEK.L	3 3
*	step05.16748.16748.2	2.2104	0.343	2721.586	2722.1787	1	258.7	30.4%	1	R.LIILDEIHLLHDDRGPVLEALVAR.A	2
*	step04.16371.16371.3	5.3378	0.4109	2722.79	2722.1787	1	1626.0	43.5%	4	R.LIILDEIHLLHDDRGPVLEALVAR.A	3
	step06.14538.14538.2	4.3766	0.5122	1816.682	1816.0762	1	738.8	66.7%	1	K.DLLPYGFAIHHAGM*TR.V	2 2
	step02.17438.17438.2	4.5837	0.4903	1717.533	1717.026	1	2141.0	78.6%	4	R.WTELGALDILQMLGR.A	2 2
	step02.16541.16541.2	4.2749	0.5356	1732.481	1733.0254	1	2643.1	82.1%	2	R.WTELGALDILQM*LGR.A	2 2
	step05.15818.15818.2	2.8728	0.4352	2008.639	2009.4025	1	607.0	52.9%	2	R.LDLVHTAALMLDKNNLVK.Y	2 2
	step03.9568.9568.2	2.7125	0.4191	1623.756	1623.8723	1	967.7	60.7%	1	R.VPIPVKESIEEPSAK.I	2 2
	step05.17753.17753.3	5.3522	0.4263	3067.662	3068.5137	1	1390.2	33.3%	4	K.YAQDEHLITFFVPVFEPLPPQYFIR.V	3 3
	step03.10938.10938.2	2.5559	0.1318	1505.489	1504.7509	1	315.3	57.7%	1	K.KVVLLTGETSTDLK.L	2 2
*	step06.14089.14089.2	3.132	0.4092	1572.492	1572.94	1	642.5	65.4%	2	R.LLSMAKPVYHAITK.H	2
	step06.13661.13661.2	2.7367	0.4702	1141.846	1142.4186	1	694.2	88.9%	2	K.KPVIVFVPSR.K	2 2
	step04.11020.11020.2	3.9153	0.4013	1936.701	1937.1288	1	559.7	60.0%	2	R.MTQNPNYYNLQGISHR.H	2 2
	step03.16524.16524.3	5.3898	0.356	2410.426	2409.592	1	1454.7	41.2%	2	R.HLSDHLSELVEQTLSDLEQSK.C	3 3
	step04.12419.12419.2	3.0218	0.4348	1266.75	1266.475	1	1307.6	80.0%	1	K.TNLLLQAHLSR.M	2 2
	step03.13102.13102.3	4.2188	0.3289	2619.728	2618.8762	2	722.8	35.0%	1	R.FCNRYPNIELSYEVVDKDSIR.S	3 3

Similarities: gi|169218225|ref|XP_9(13:5)

gi|39780588|ref|NP_06

12.8%

804

91810

7.4

pre-rRNA-processing protein TSR1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.15259.15259.2	3.7658	0.3669	2207.652	2207.5396	1	666.5	61.1%	2	R.WFFTSARPGDLHVVLDM*AK.V	2
*	step03.14516.14516.2	5.8578	0.5202	2535.734	2535.8354	1	1330.6	59.1%	2	R.AYLFAHAVDFVPSEENNLVGTLK.I	2
*	step05.14413.14413.2	3.984	0.4789	1521.707	1521.8083	1	1723.9	83.3%	2	R.LLHIVGYGDFQMK.Q	2
*	step02.15408.15408.2	2.2581	0.2408	2072.903	2072.9832	1	150.4	29.3%	1	R.RFRAS#PLFS#QHT#AADK.H	2
*	step05.12890.12890.2	2.9454	0.157	2155.074	2155.4019	1	458.8	50.0%	1	K.SNGM*HSLIATGHLMSVDPDR.M	2
*	step02.15119.15119.2	3.4434	0.4115	1532.65	1531.7798	1	982.0	77.3%	2	R.EDVLWFKPVELR.T	2

gi|10801345|ref|NP_03

12.8%

218

25060

4.9

eukaryotic translation initiation factor 3 subunit K [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.8603.8603.2	4.1077	0.4677	1563.321	1563.7338	1	2526.4	84.6%	1	K.ENAYDLEANLAVLK.L	2
*	step04.12467.12467.2	3.5427	0.3896	1631.881	1631.8479	1	868.5	80.8%	2	K.ALTNLPHTDFTLCK.C	2

gi|149193321|ref|NP_0

12.7%

480

53136

6.2

G-rich sequence factor 1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18214.18214.3	4.3788	0.3945	2535.133	2534.7732	1	1747.4	42.5%	2	R.AQGLPWSCTMEDVLNFFSDCR.I	3
	step02.11500.11500.2	4.5708	0.5068	1849.471	1849.0133	1	1448.5	70.0%	1	R.RGDALIEMESEQDVQK.A	2 2
	step04.13624.13624.3	3.9363	0.537	2700.682	2700.0225	1	814.5	37.0%	1	K.EVPEKLPEAADFGTTSSLHFVHMR.G	3 3

Similarities: gi|149193319|ref|NP_0(2:1)

gi|39725634|ref|NP_05

1019

116465

9.1

la-related protein 1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.16237.16237.2	5.2099	0.5614	2033.936	2033.3826	1	2280.3	85.3%	1	R.KMDADGFLPITLIASFHR.V	2
*	step04.16085.16085.2	3.2848	0.4414	1904.858	1905.2097	1	429.3	50.0%	2	K.MDADGFLPITLIASFHR.V	2
*	step02.18042.18042.2	5.2511	0.5564	1704.799	1705.0316	1	2635.9	83.3%	2	R.VQALTTDISLIFAALK.D	2
*	step03.17230.17230.2	4.3325	0.4964	2035.008	2035.3701	1	1687.1	63.9%	3	R.VQALTTDISLIFAALKDSK.V	2
*	step03.8422.8422.2	3.9647	0.4123	1714.408	1713.9539	1	800.4	66.7%	3	R.AVTPVPTKTEEVSNLK.T	2
*	step05.13324.13324.2	5.4059	0.5538	2172.123	2171.5056	1	979.8	63.9%	3	R.FSHLTSLPQQLPSQQLMSK.D	2
*	step04.12768.12768.3	3.743	0.3356	2036.596	2036.2172	1	1976.8	51.5%	2	R.HSSNPPLESHVGWVMDSR.E	3
	step02.14421.14421.2	2.9276	0.4107	1058.313	1058.2056	1	985.8	92.9%	1	R.YGLECLFR.Y	2
*	step06.11254.11254.3	4.0572	0.3282	3179.22	3179.505	1	799.4	31.0%	1	R.CPSQSSSRPAAMISQPPTPPTGQPVREDAK.W	3
*	step05.9822.9822.2	2.4788	0.1306	1845.734	1846.1438	1	326.9	44.1%	1	R.PAAMISQPPTPPTGQPVR.E	2
*	step05.9770.9770.2	2.9967	0.2187	2288.774	2289.5974	12	212.6	33.3%	1	R.PAAMISQPPTPPTGQPVREDAK.W	2

gi|30348954|ref|NP_06

1006

110136

6.9

E3 ubiquitin-protein ligase MIB1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.8693.8693.2	4.27	0.5784	2249.231	2249.4753	1	813.5	50.0%	2	R.ILDSAPTGIKHDGTMCDTCR.Q	2
*	step03.13125.13125.2	3.4043	0.5769	1597.633	1597.8201	1	1219.0	78.6%	2	R.GHGEWAEAMLPTLGK.V	2
*	step05.13855.13855.2	6.4309	0.59	2029.407	2029.2476	1	1548.1	77.8%	2	R.AVHHAAFGDEGAVIEVLHR.G	2
*	step05.13846.13846.3	6.832	0.5421	2029.626	2029.2476	1	3555.8	59.7%	2	R.AVHHAAFGDEGAVIEVLHR.G	3
*	step03.13280.13280.3	6.3599	0.4775	2855.091	2855.0566	1	2470.3	40.0%	3	K.TLLDFGCHPSLQDSEGDTPLHDAISK.K	3
*	step05.13145.13145.2	2.6305	0.1236	1253.523	1253.4746	10	575.0	72.2%	1	K.LPRPWIVDEK.K	2
*	step02.12033.12033.3	3.8372	0.5126	1937.431	1937.1003	1	1187.3	48.4%	1	K.LDIQDKDGDTPLHEALR.H	3
*	step05.15056.15056.2	5.3875	0.5063	2038.428	2037.2996	1	1616.4	65.8%	1	K.KSAASIACFLAANGADLSIR.N	2

gi|145580615|ref|NP_0

709

83252

5.2

protein KRI1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14866.14866.3	6.6184	0.5374	3276.126	3276.5117	1	1538.1	39.3%	1	K.VTGNEMLGLEEGDLEDDFDPAQHDQLMQK.C	3
*	step02.15078.15078.2	4.5299	0.521	2693.273	2693.9382	1	684.7	47.8%	1	R.TVVPCDFGLSTEEILAADDKELNR.W	2
*	step02.17783.17783.2	2.5254	0.2161	2568.706	2568.607	1	421.1	26.2%	1	K.RQVFKS#LCREEAETPAEAT#GK.P	2
*	step02.14122.14122.2	2.8651	0.4212	1637.743	1637.9191	1	1283.4	75.0%	1	R.LLGPTVMLGGCEFSR.Q	2

gi|149193319|ref|NP_0

318

36613

5.7

G-rich sequence factor 1 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.11500.11500.2	4.5708	0.5068	1849.471	1849.0133	1	1448.5	70.0%	1	R.RGDALIEMESEQDVQK.A	2 2
	step04.13624.13624.3	3.9363	0.537	2700.682	2700.0225	1	814.5	37.0%	1	K.EVPEKLPEAADFGTTSSLHFVHMR.G	3 3

Similarities: gi|149193321|ref|NP_0(2:0)

gi|18644728|ref|NP_07

12.5%

1146

127593

7.6

nucleolar protein 6 alpha isoform [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.14080.14080.2	2.3567	0.1682	2166.223	2166.4192	31	262.5	36.8%	1	R.VPSVPETELTDQAWLPAGVR.V	2 2
	step05.10855.10855.2	3.3609	0.3408	1251.704	1251.5018	1	880.4	75.0%	2	R.VPLHQVPYAVK.G	2 2
	step05.18673.18674.3	4.6885	0.4918	3259.437	3259.6978	1	1516.2	32.1%	2	R.YNTWVLQDTVLESHLQLLSTILSSAQGLK.D	3 3
	step05.18936.18936.3	5.1452	0.481	3498.779	3497.9421	1	823.2	25.8%	3	R.LKLWPELQDNGGDYVSAALGPLTTLLEQGLGAR.L	3 3
*	step05.15486.15486.2	2.6761	0.3099	2517.961	2518.8496	4	153.2	32.5%	3	R.YTEVFPPTPVRPAFSFYETLR.E	2
*	step04.11793.11793.2	4.6903	0.589	1668.617	1667.885	1	1746.1	80.8%	3	R.LAELLTQQHGLQCR.A	2
*	step05.16126.16126.3	3.7109	0.312	1818.613	1818.1517	1	1151.2	62.5%	2	R.TVFRPPLDIYDVLIR.L	3
*	step05.16121.16121.2	4.7464	0.449	1818.862	1818.1517	1	1311.4	75.0%	6	R.TVFRPPLDIYDVLIR.L	2

Similarities: gi|22212931|ref|NP_63(4:4)

gi|148491070|ref|NP_0

12.5%

591

66690

6.5

CTP synthase 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.15100.15100.2	3.3937	0.4353	2123.149	2123.464	1	378.8	50.0%	2	K.TVQVVPHITDAIQEWVMR.Q	2
*	step04.15222.15222.3	3.5844	0.2969	2123.273	2123.464	1	1040.8	42.6%	1	K.TVQVVPHITDAIQEWVMR.Q	3
*	step02.17206.17206.3	3.7856	0.3475	1891.658	1891.1995	2	1484.0	46.7%	2	R.VPLLLEEQGVVDYFLR.R	3
*	step06.14116.14116.2	4.6197	0.4552	1626.594	1626.8778	1	1500.8	83.3%	1	K.LCSAHGVLVPGGFGVR.G	2
*	step03.15058.15058.3	6.3855	0.5607	2921.139	2920.2898	1	2877.4	44.6%	2	R.MEIVELEDHPFFVGVQYHPEFLSR.P	3

U	gi\|74099697\|ref\|NP_00	4	8	12.5%	449	49264	6.3	heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens]
U	gi\|9624998\|ref\|NP_062	4	8	12.5%	449	49264	6.3	heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.5678.5678.2	3.7707	0.4627	1685.507	1685.7361	1	1010.4	83.3%	2	K.HTGPNSPDTANDGFVR.L	2 2
step01.8793.8794.2	3.9055	0.418	1842.809	1842.9838	1	2292.8	68.8%	3	R.STGEAFVQFASQEIAEK.A	2 2
step02.11201.11201.2	3.0683	0.5156	1602.622	1602.7039	1	1077.3	75.0%	2	R.DLNYCFSGMSDHR.Y	2 2
step03.8740.8740.2	2.8973	0.3827	1093.404	1093.2181	1	911.4	77.8%	1	R.VHIEIGPDGR.V	2 2 2

Similarities: gi|5031753|ref|NP_005(4:0)
gi|148470397|ref|NP_0(1:3)

U	gi\|58761484\|ref\|NP_00	4	9	12.4%	507	56431	6.5	T-complex protein 1 subunit gamma isoform c [Homo sapiens]
U	gi\|63162572\|ref\|NP_00	4	9	11.6%	545	60534	6.5	T-complex protein 1 subunit gamma isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.17416.17416.3	6.7251	0.5796	3420.541	3419.9216	1	1205.2	32.4%	3	R.ILQMEEEYIQQLCEDIIQLKPDVVITEK.G	3
step02.17080.17080.3	6.2647	0.5462	3436.333	3435.921	1	1088.6	34.3%	2	R.ILQM*EEEYIQQLCEDIIQLKPDVVITEK.G	3
step04.13217.13217.2	3.361	0.416	1404.618	1404.6199	1	1585.3	81.8%	2	K.GISDLAQHYLMR.A	2
step03.12657.12657.3	4.5476	0.2765	2498.72	2497.787	1	1003.8	38.6%	2	R.IVSRPEELREDDVGTGAGLLEIK.K	3

gi|310114721|ref|XP_0

12.4%

477

50568

6.1

PREDICTED: putative tubulin beta-4q chain-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.8104.8104.2	4.3273	0.4644	1603.457	1602.835	1	1180.5	82.1%	4	R.AVLVDLEPGTMDSVR.S	2 2 2 2 2
	step01.7456.7456.2	2.6574	0.0848	1618.233	1618.8344	1	576.7	64.3%	1	R.AVLVDLEPGTM*DSVR.S	2 2 2 2 2
2	step03.13604.13604.3	7.6194	0.4839	3442.817	3441.7993	1	4047.8	40.6%	4	R.KEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK.I	3 3 3 3 3 3 3
2	step02.14675.14675.2	3.7336	0.5747	3314.255	3313.6262	1	330.1	30.6%	4	K.EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK.I	2 2 2 2 2 2 2
2	step02.14655.14655.3	7.6733	0.6098	3314.864	3313.6262	1	2480.0	33.1%	4	K.EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK.I	3 3 3 3 3 3 3
	step02.10832.10832.1	2.1846	0.2528	1130.717	1131.2664	1	277.6	66.7%	1	R.FPGQLNADLR.K	1 1 1 1 1 1 1 1 1 1
	step02.11042.11042.2	3.013	0.4079	1131.393	1131.2664	1	848.0	94.4%	4	R.FPGQLNADLR.K	2 2 2 2 2 2 2 2 2 2
	step04.10136.10136.2	2.7872	0.382	1259.398	1259.4392	1	752.3	80.0%	7	R.FPGQLNADLRK.L	2 2 2 2 2 2 2 2 2 2

gi|20270253|ref|NP_11

12.3%

757

86360

5.2

activating signal cointegrator 1 complex subunit 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16254.16254.3	5.0884	0.4158	2795.746	2795.2234	1	905.3	37.5%	2	R.YFVLYKPPPKDNIPALVEEYLER.A	3
*	step03.17802.17802.2	4.2665	0.4756	2685.868	2686.0125	1	1356.2	52.3%	2	K.DHFISPSAFGEILYNNFLFDIPK.I	2
*	step03.17804.17804.3	4.752	0.41	2686.149	2686.0125	1	657.3	35.2%	4	K.DHFISPSAFGEILYNNFLFDIPK.I	3
*	step02.18443.18443.3	4.29	0.3937	3313.636	3313.6592	1	802.8	24.1%	1	R.FLRDYDALFPVAEDISLLQQASSVLDETR.T	3
*	step03.16198.16198.2	2.9595	0.1499	2065.596	2065.275	1	651.7	47.1%	1	R.TAYILQAVESAWEGVDRR.K	2

U	gi\|4506063\|ref\|NP_002	3	4	12.3%	381	42982	5.3	cAMP-dependent protein kinase type I-alpha regulatory subunit [Homo sapiens]
U	gi\|47132583\|ref\|NP_99	3	4	12.3%	381	42982	5.3	cAMP-dependent protein kinase type I-alpha regulatory subunit [Homo sapiens]
U	gi\|47132581\|ref\|NP_99	3	4	12.3%	381	42982	5.3	cAMP-dependent protein kinase type I-alpha regulatory subunit [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.5697.5697.2	2.8471	0.3553	2057.834	2058.1292	1	518.8	52.9%	1	R.TDSREDEIS#PPPPNPVVK.G	2
step05.16177.16177.2	2.5307	0.275	2050.951	2050.37	1	227.9	50.0%	2	R.LGPSDYFGEIALLMNRPR.A	2
step04.10732.10732.2	2.6083	0.3439	1258.583	1258.4862	1	512.2	75.0%	1	R.VLGPCSDILKR.N	2

gi|169218225|ref|XP_9

12.2%

1700

194322

6.7

PREDICTED: u5 small nuclear ribonucleoprotein 200 kDa helicase-like, partial [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.14394.14394.3	3.8734	0.2098	2923.4	2922.3237	1	859.1	32.0%	1	K.GYEEVHVPALKPKPFGSEEQLLPVEK.L	3 3
step06.14538.14538.2	4.3766	0.5122	1816.682	1816.0762	1	738.8	66.7%	1	K.DLLPYGFAIHHAGM*TR.V	2 2
step02.17438.17438.2	4.5837	0.4903	1717.533	1717.026	1	2141.0	78.6%	4	R.WTELGALDILQMLGR.A	2 2
step02.16541.16541.2	4.2749	0.5356	1732.481	1733.0254	1	2643.1	82.1%	2	R.WTELGALDILQM*LGR.A	2 2
step05.15818.15818.2	2.8728	0.4352	2008.639	2009.4025	1	607.0	52.9%	2	R.LDLVHTAALMLDKNNLVK.Y	2 2
step03.9568.9568.2	2.7125	0.4191	1623.756	1623.8723	1	967.7	60.7%	1	R.VPIPVKESIEEPSAK.I	2 2
step05.17753.17753.3	5.3522	0.4263	3067.662	3068.5137	1	1390.2	33.3%	4	K.YAQDEHLITFFVPVFEPLPPQYFIR.V	3 3
step03.10938.10938.2	2.5559	0.1318	1505.489	1504.7509	1	315.3	57.7%	1	K.KVVLLTGETSTDLK.L	2 2
step06.13661.13661.2	2.7367	0.4702	1141.846	1142.4186	1	694.2	88.9%	2	K.KPVIVFVPSR.K	2 2
step04.11020.11020.2	3.9153	0.4013	1936.701	1937.1288	1	559.7	60.0%	2	R.MTQNPNYYNLQGISHR.H	2 2
step03.16524.16524.3	5.3898	0.356	2410.426	2409.592	1	1454.7	41.2%	2	R.HLSDHLSELVEQTLSDLEQSK.C	3 3
step04.12419.12419.2	3.0218	0.4348	1266.75	1266.475	1	1307.6	80.0%	1	K.TNLLLQAHLSR.M	2 2
step03.13102.13102.3	4.2188	0.3289	2619.728	2618.8762	2	722.8	35.0%	1	R.FCNRYPNIELSYEVVDKDSIR.S	3 3

Similarities: gi|40217847|ref|NP_05(13:0)

gi|5032179|ref|NP_005

12.2%

835

88550

5.8

transcription intermediary factor 1-beta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13173.13173.3	4.9313	0.3491	3444.752	3444.6533	1	877.2	22.9%	2	R.STAPSAAASASASAAASSPAGGGAEALELLEHCGVCR.E	3
*	step02.12532.12532.2	3.0298	0.3989	1521.577	1521.6156	1	563.1	72.7%	2	K.DHQYQFLEDAVR.N	2
*	step06.14516.14516.2	2.7791	0.3813	1090.652	1090.3022	1	889.9	92.9%	2	K.LIYFQLHR.A	2
*	step02.14771.14771.2	2.6459	0.3458	1309.405	1309.4536	1	754.0	88.9%	2	K.FQWDLNAWTK.S	2
*	step06.11200.11200.2	4.6089	0.4281	2019.646	2020.3024	1	902.6	57.9%	10	K.IVAERPGTNSTGPAPMAPPR.A	2
*	step06.10898.10898.3	4.9926	0.4688	2021.579	2020.3024	1	2940.6	59.2%	4	K.IVAERPGTNSTGPAPMAPPR.A	3
*	step06.10099.10099.3	4.8092	0.4338	2036.823	2036.3018	1	1663.7	48.7%	2	K.IVAERPGTNSTGPAPM*APPR.A	3
*	step01.8404.8404.2	2.8205	0.3101	1659.575	1659.8615	1	1212.8	75.0%	1	R.LDLDLTADSQPPVFK.V	2

gi|20149629|ref|NP_05

12.1%

455

50647

9.1

probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.17619.17619.3	4.5722	0.4474	1927.447	1926.2485	1	1934.6	48.5%	2	K.TGAFALPILNALLETPQR.L	3 3
*	step05.12914.12914.2	2.8197	0.4702	1845.704	1846.1006	1	391.4	53.1%	1	R.NLGFTAIPLHGQM*SQSK.R	2
	step04.14268.14268.2	4.1667	0.4733	2202.998	2203.4827	1	1579.2	57.9%	1	R.GLDIPHVDVVVNFDIPTHSK.D	2 2

Similarities: gi|41327776|ref|NP_95(2:1)

gi|13376840|ref|NP_07

12.1%

305

33581

5.5

WD repeat-containing protein 61 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18496.18496.2	5.8011	0.5829	2052.554	2053.344	1	2939.7	73.7%	3	K.YLASGAIDGIINIFDIATGK.L	2
*	step02.18506.18506.3	4.7286	0.3918	2053.825	2053.344	1	2182.6	48.7%	1	K.YLASGAIDGIINIFDIATGK.L	3
*	step04.13248.13248.2	5.1843	0.4587	2105.904	2105.291	1	1052.3	65.6%	2	R.TCVHTFFDHQDQVWGVK.Y	2

gi|303227928|ref|NP_0

12.0%

559

62576

6.0

matrin-3 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.12239.12239.2	2.5815	0.374	1145.702	1145.3596	1	839.8	93.8%	1	R.VVHIMDFQR.G	2 2
step06.16516.16516.2	4.7894	0.4808	2439.208	2439.8804	1	847.5	55.0%	2	R.YQLLQLVEPFGVISNHLILNK.I	2 2
step06.16522.16522.3	3.7717	0.3067	2440.664	2439.8804	1	552.2	32.5%	3	R.YQLLQLVEPFGVISNHLILNK.I	3 3
step06.13576.13576.2	5.2953	0.5063	2037.84	2038.2926	1	1379.8	69.4%	2	R.VIHLSNLPHSGYSDSAVLK.L	2 2
step06.13579.13579.3	4.226	0.5164	2038.854	2038.2926	1	704.5	40.3%	1	R.VIHLSNLPHSGYSDSAVLK.L	3 3
step02.14183.14183.2	3.9691	0.3545	1970.641	1970.2998	1	578.9	55.9%	2	R.IGPYQPNVPVGIDYVIPK.T	2 2

Similarities: gi|21626466|ref|NP_06(6:0)

gi|4506681|ref|NP_001

12.0%

158

18431

10.3

40S ribosomal protein S11 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12161.12161.2	2.4906	0.1502	1136.401	1136.2878	1	629.2	92.9%	2	R.RDYLHYIR.K	2
*	step04.12108.12108.2	3.33	0.4594	1348.474	1348.5498	1	443.8	65.0%	3	K.NMSVHLSPCFR.D	2
*	step05.11384.11384.2	2.3077	0.2892	1363.731	1364.5492	1	532.4	70.0%	2	K.NM*SVHLSPCFR.D	2

gi|21265096|ref|NP_06

12.0%

158

18325

7.9

39S ribosomal protein L50, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.16056.16056.2	5.7802	0.5321	2088.895	2089.3428	1	1925.6	66.7%	2	K.FNLLAHLADDLGHVVPNSR.L	2
*	step06.16081.16081.3	5.4765	0.4703	2089.599	2089.3428	1	3241.7	51.4%	1	K.FNLLAHLADDLGHVVPNSR.L	3

gi|221136939|ref|NP_0

11.8%

499

55456

5.8

U4/U6 small nuclear ribonucleoprotein Prp31 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.15323.15323.2	4.347	0.3304	2032.918	2033.3159	1	939.1	65.6%	2	K.RFPELESLVPNALDYIR.T	2
*	step06.14924.14924.3	6.4447	0.4737	3390.89	3389.7588	1	1262.3	30.8%	4	K.TLSGFSSTSVLPHTGYIYHSDIVQSLPPDLR.R	3
*	step02.10668.10668.2	3.3503	0.2822	1351.638	1351.487	1	1166.8	80.0%	2	K.VGYELKDEIER.K	2

gi|50053872|ref|NP_94

11.8%

246

28661

10.5

60S ribosomal protein L7-like 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14008.14008.2	2.3475	0.2756	1264.789	1264.582	1	443.8	70.0%	1	R.KIPLVPENLLK.K	2
*	step04.17914.17914.3	4.5432	0.423	2059.708	2059.3867	1	1739.0	51.5%	3	K.FGVICLEDLIHEIAFPGK.H	3
*	step05.18394.18394.2	5.4705	0.5586	2060.032	2059.3867	1	1160.7	64.7%	7	K.FGVICLEDLIHEIAFPGK.H	2

U	gi\|21735596\|ref\|NP_05	3	6	11.7%	469	51735	5.2	programmed cell death protein 4 isoform 1 [Homo sapiens]
U	gi\|21735598\|ref\|NP_66	3	6	12.0%	458	50576	5.5	programmed cell death protein 4 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.15914.15914.2	5.5239	0.4943	2707.05	2707.9966	1	1278.1	47.7%	2	K.TLTPIIQEYFEHGDTNEVAEMLR.D	2
step03.11445.11445.2	3.4796	0.4256	1200.502	1200.4149	1	1348.2	85.0%	2	R.APQLVGQFIAR.A	2
step02.14734.14734.2	4.5584	0.4432	2487.051	2487.7493	1	1443.4	65.0%	2	R.IYNEIPDINLDVPHSYSVLER.F	2

gi|4504517|ref|NP_001

11.7%

205

22783

6.4

heat shock protein beta-1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.14587.14587.2	2.4046	0.1886	987.958	988.2114	2	622.8	78.6%	2	R.RVPFSLLR.G	2
*	step02.13108.13108.2	3.197	0.2617	1784.532	1784.9906	1	1048.9	63.3%	1	R.VSLDVNHFAPDELTVK.T	2

gi|155969707|ref|NP_0

11.6%

1019

117968

6.6

insulin-degrading enzyme isoform 1 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.15087.15087.2	4.3933	0.5881	2181.9	2181.4192	1	1102.0	62.5%	2	R.FAQFFLCPLFDESCKDR.E	2
*	step04.13462.13462.2	3.4269	0.4032	2188.821	2188.4265	1	839.8	67.6%	3	K.NVPLPEFPEHPFQEEHLK.Q	2
	step03.16463.16463.2	2.8339	0.3493	2788.232	2788.2095	1	377.0	32.6%	1	R.LLMTEVAWTKDELKEALDDVTLPR.L	2 2
	step03.16425.16425.3	6.3756	0.44	2788.289	2788.2095	1	2293.5	40.2%	2	R.LLMTEVAWTKDELKEALDDVTLPR.L	3 3
	step03.15705.15705.3	5.6536	0.3656	2803.946	2804.209	1	2976.7	43.5%	2	R.LLM*TEVAWTKDELKEALDDVTLPR.L	3 3
	step06.15410.15410.2	3.7002	0.4709	1460.336	1459.7183	1	1562.4	83.3%	3	R.LHIEALLHGNITK.Q	2 2
	step03.7830.7830.2	2.5149	0.1992	1176.489	1176.3071	4	466.5	68.8%	2	R.YREVQLPDR.G	2 2
	step04.12911.12911.2	3.2503	0.5162	1595.718	1595.8239	1	1454.4	73.1%	1	R.TKEQLGYIVFSGPR.R	2 2
	step05.12607.12607.2	4.2834	0.3956	1844.042	1845.0908	1	1148.0	85.7%	2	R.FIIQSEKPPHYLESR.V	2 2
	step05.11293.11293.2	2.4472	0.2532	922.508	922.1098	1	790.9	100.0%	1	K.HIQALAIR.R	2 2

Similarities: gi|260099676|ref|NP_0(8:2)

U	gi\|291084505\|ref\|NP_0	5	6	11.6%	705	79496	8.9	NF-kappa-B-repressing factor isoform 1 [Homo sapiens]
U	gi\|63003897\|ref\|NP_06	5	6	11.9%	690	77673	8.8	NF-kappa-B-repressing factor isoform 2 [Homo sapiens]
U	gi\|291084508\|ref\|NP_0	5	6	11.9%	690	77673	8.8	NF-kappa-B-repressing factor isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.10995.10995.2	3.1559	0.3447	1736.863	1735.878	1	697.9	60.7%	1	R.FEPVHFVASSSKDER.Q	2
step03.8198.8198.2	3.8239	0.4563	1546.376	1546.6901	1	553.5	79.2%	2	K.EVNEQTHFASMPR.D	2
step03.13031.13031.2	2.3787	0.1665	2269.265	2270.609	1	502.3	39.5%	1	K.TNPEYIYAPLKEIPPADIPK.N	2
step03.8001.8001.2	2.6221	0.2505	1272.341	1272.4331	1	1304.2	77.3%	1	K.SGEGIREPISVK.E	2
step03.19888.19888.3	3.9822	0.0831	2893.203	2892.8005	2	991.8	22.4%	1	R.DIEQIIRNY#ARS#ESHT#DLTFSR.E	3

gi|5803167|ref|NP_006

11.6%

501

58849

5.4

splicing factor 3A subunit 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.17187.17187.2	2.2783	0.1349	2643.174	2642.9443	19	239.9	28.6%	1	R.NKDIAFLEAQIYEYVEILGEQR.H	2
*	step05.15553.15553.2	4.254	0.3197	2061.083	2061.4126	1	966.8	68.8%	2	K.NLPLGWDGKPIPYWLYK.L	2
*	step04.12587.12587.2	2.5799	0.299	2375.721	2375.569	1	320.4	38.9%	1	K.LHGLNINYNCEICGNYTYR.G	2

U	gi\|6005926\|ref\|NP_009	2	2	11.6%	475	53501	9.1	splicing factor U2AF 65 kDa subunit isoform a [Homo sapiens]
U	gi\|60279268\|ref\|NP_00	2	2	11.7%	471	53121	9.1	splicing factor U2AF 65 kDa subunit isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.15665.15665.3	3.7182	0.3646	3158.959	3159.5864	1	412.1	25.0%	1	R.LGGLTQAPGNPVLAVQINQDKNFAFLEFR.S	3
	step03.16811.16811.3	3.5987	0.1695	2894.022	2893.3254	1	738.0	38.0%	1	K.LFIGGLPNYLNDDQVKELLTSFGPLK.A	3

gi|42544159|ref|NP_00

11.4%

858

96865

5.4

heat shock protein 105 kDa [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.8496.8496.2	4.2203	0.4896	1716.49	1716.8364	1	1216.5	82.1%	1	K.NQQITHANNTVSNFK.R	2
*	step04.14451.14451.3	5.8674	0.456	3283.782	3283.668	1	417.9	25.9%	2	K.LKETAENSLKKPVTDCVISVPSFFTDAER.R	3
*	step04.14250.14250.3	3.8806	0.4938	2325.486	2325.5996	1	1381.2	42.1%	2	K.KPVTDCVISVPSFFTDAERR.S	3
*	step03.15232.15232.2	3.854	0.4585	1783.892	1784.0889	1	972.6	78.6%	2	K.IEVPLYSLLEQTHLK.V	2
*	step05.16115.16115.2	4.1433	0.4038	2262.858	2263.7073	1	898.5	57.9%	1	K.IKVVNVELPIEANLVWQLGK.D	2
*	step05.9816.9816.2	3.5987	0.3949	2095.621	2096.407	1	666.5	52.9%	1	K.IKELNNTCEPVVTQPKPK.I	2
*	step05.9533.9533.3	3.6762	0.1376	2095.716	2096.407	3	861.2	36.8%	1	K.IKELNNTCEPVVTQPKPK.I	3
*	step03.7098.7098.2	2.517	0.346	1854.442	1855.0758	1	385.0	53.3%	1	K.ELNNTCEPVVTQPKPK.I	2

gi|55953087|ref|NP_03

11.4%

634

73965

9.5

nucleolar GTP-binding protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.15977.15977.3	5.0352	0.5365	2739.748	2741.0698	1	1320.2	44.0%	1	K.LDDIHPFYADLMNILYDKDHYK.L	3
*	step04.15258.15258.2	4.0351	0.4119	1682.536	1682.9696	1	1605.0	75.0%	2	R.NTIEMQAITALAHLR.A	2
*	step03.14526.14526.3	4.6672	0.4249	2707.253	2707.0566	1	905.8	35.2%	2	K.HDKIPEIWEGHNIADYIDPAIMK.K	3
*	step03.5114.5114.2	4.9579	0.4529	1545.686	1545.7168	1	2161.4	90.9%	2	K.KLEELEKEEELR.T	2

gi|56549656|ref|NP_00

11.4%

343

37048

5.1

hypothetical protein LOC147339 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.10320.10320.2	3.7111	0.4049	2194.533	2195.5376	1	1522.0	65.8%	2	K.DGVADSTVISSMPCLLMELR.R	2
*	step02.13728.13728.2	3.5829	0.4081	1982.483	1983.2106	1	832.9	61.1%	2	K.TITAEIPGHLDPGFLASDK.T	2

gi|42542392|ref|NP_00

11.3%

1054

120974

5.9

CCAAT/enhancer-binding protein zeta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.14260.14260.2	3.3483	0.2865	1473.587	1473.614	1	1216.8	75.0%	1	K.DKQNIFEFFER.Q	2
*	step05.15935.15935.2	4.3061	0.4171	1491.291	1490.7725	1	1464.1	85.0%	4	R.LILWYFEHQLK.H	2
*	step04.18610.18610.3	6.4214	0.582	2481.914	2481.829	1	2032.0	52.4%	2	K.HLVAEFVQVLETLSHDTLVTTK.T	3
*	step04.13754.13754.2	2.7996	0.3589	1286.533	1285.5084	1	871.5	75.0%	1	K.ASHLLETLLCK.H	2
*	step02.5866.5866.2	4.2879	0.5833	1848.721	1848.9834	1	1144.9	70.0%	2	K.KLETEETVPETDVETK.K	2
*	step03.13336.13336.2	4.7299	0.4556	2009.512	2008.2567	1	1117.9	65.6%	1	R.NPLFCGAENTSLWELKK.L	2
*	step02.13917.13917.2	3.2794	0.3867	1733.596	1732.8743	1	664.3	80.8%	2	K.EESQIPVDEVFFHR.Y	2
*	step04.12682.12682.2	3.9676	0.4105	1901.721	1902.0162	1	1370.6	75.0%	2	K.RKGTDDFDFAGSFQGPR.K	2

U	gi\|45593130\|ref\|NP_05	6	12	11.3%	549	61993	9.2	guanine nucleotide-binding protein-like 3 isoform 1 [Homo sapiens]
U	gi\|45643129\|ref\|NP_99	6	12	11.5%	537	60540	8.8	guanine nucleotide-binding protein-like 3 isoform 2 [Homo sapiens]
U	gi\|45643127\|ref\|NP_99	6	12	11.5%	537	60540	8.8	guanine nucleotide-binding protein-like 3 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.7623.7623.2	2.6005	0.1235	1257.272	1257.4202	2	737.8	72.7%	1	R.KDPGVPNSAPFK.E	2
step03.6047.6047.2	3.4798	0.4057	2085.686	2086.3525	1	525.2	52.9%	2	R.KLETNPDIKPSNVEPM*EK.E	2
step03.6057.6057.3	4.7386	0.2643	2086.627	2086.3525	1	1925.5	50.0%	2	R.KLETNPDIKPSNVEPM*EK.E	3
step02.9976.9976.2	2.2087	0.1304	1941.367	1942.1803	5	275.5	40.6%	1	K.LETNPDIKPSNVEPMEK.E	2
step05.12995.12995.2	3.1428	0.3006	941.044	941.2361	1	925.0	92.9%	4	K.KLVLILNK.S	2
step03.14422.14422.2	5.0606	0.5272	2442.852	2442.775	1	751.3	52.2%	2	R.SPASIEVVKPMEAASAILSQADAR.Q	2

gi|168229156|ref|NP_0

11.3%

415

47138

10.1

NF-kappa-B-activating protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.10090.10090.2	3.1117	0.4628	1525.615	1525.6521	1	841.0	71.4%	2	R.NGLTHQLGGLSQGSR.N	2
*	step02.10042.10042.2	2.4799	0.1147	2049.81	2049.0603	21	193.5	30.0%	1	R.PY#GS#DKPWPSLLDKER.E	2
*	step02.10198.10198.2	2.5338	0.238	1682.96	1682.8534	2	315.0	46.7%	1	R.TKAEEPSDLIGPEAPK.T	2

gi|4759156|ref|NP_004

11.3%

282

31280

9.8

U1 small nuclear ribonucleoprotein A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19526.19526.2	4.4958	0.4535	2171.311	2171.5237	1	2140.6	69.4%	1	K.SLYAIFSQFGQILDILVSR.S	2
*	step04.11808.11808.2	2.4905	0.3573	1637.371	1636.8766	1	327.1	66.7%	1	R.SMQGFPFYDKPMR.I	2

gi|32526896|ref|NP_05

11.2%

659

73994

6.7

armadillo repeat-containing protein 8 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.17231.17232.2	5.1136	0.4872	2317.194	2317.7468	1	1266.0	60.0%	4	K.SLLDCHIIPALLQGLLSPDLK.F	2 2
	step01.9465.9465.2	3.8196	0.4644	2146.814	2146.383	1	1058.1	55.6%	1	R.VEGAETLAYLIEPDVELQR.I	2 2
	step06.17590.17590.2	6.2486	0.443	1922.503	1923.2649	1	2323.3	68.8%	4	R.IASITDHLIAMLADYFK.Y	2 2
	step04.18550.18550.3	4.9234	0.3864	1924.387	1923.2649	1	1160.4	42.2%	6	R.IASITDHLIAMLADYFK.Y	3 3
	step03.17087.17087.2	5.1862	0.5276	1940.043	1939.2643	1	850.1	65.6%	7	R.IASITDHLIAM*LADYFK.Y	2 2
	step04.17042.17042.3	4.127	0.4409	1940.081	1939.2643	1	1033.5	42.2%	2	R.IASITDHLIAM*LADYFK.Y	3 3
*	step02.17321.17321.2	3.1251	0.3516	1953.011	1952.2899	1	899.4	50.0%	1	R.VNGIWALMNMAFQAEQK.I	2

Similarities: gi|47458043|ref|NP_99(6:1)

gi|21361875|ref|NP_11

11.2%

475

54855

4.9

protein LTV1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.19252.19252.2	2.2772	0.1945	2092.898	2094.1216	114	109.7	25.9%	1	K.EPSGPSELIPSSTFS#AHNR.R	2
*	step03.6213.6213.2	4.4742	0.4542	1659.626	1659.7816	1	876.2	75.0%	2	R.NEQLTLHDERFEK.F	2
*	step03.13116.13116.2	3.3149	0.4468	2629.841	2629.8494	1	507.4	42.5%	1	K.WDCESICSTYSNLYNHPQLIK.Y	2

gi|5453880|ref|NP_006

11.2%

249

28585

4.1

acidic leucine-rich nuclear phosphoprotein 32 family member A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step03.11008.11008.2	3.3751	0.3117	1258.604	1257.5015	1	1351.6	90.0%	2	K.IKDLSTIEPLK.K	2 2 2 2
2	step04.11835.11835.2	3.9325	0.2328	1386.57	1385.6744	1	1449.0	81.8%	4	K.IKDLSTIEPLKK.L	2 2 2 2
	step01.8926.8926.2	5.2594	0.5033	1974.204	1974.1108	1	1565.5	66.7%	2	K.SLDLFNCEVTNLNDYR.E	2 2

Similarities: gi|5454088|ref|NP_006(3:0)
gi|21071028|ref|NP_03(2:1)
gi|310110798|ref|XP_0(2:1)

U	gi\|78000181\|ref\|NP_00	2	13	11.2%	215	23432	10.9	60S ribosomal protein L14 [Homo sapiens]
U	gi\|78000183\|ref\|NP_00	2	13	11.2%	215	23432	10.9	60S ribosomal protein L14 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.11572.11572.2	3.5223	0.458	1233.465	1233.4003	1	981.0	77.3%	8	R.VAYVSFGPHAGK.L	2
	step03.12972.12972.2	4.5361	0.4554	1355.71	1355.5653	1	2006.4	86.4%	5	K.LVAIVDVIDQNR.A	2

gi|4502643|ref|NP_001

531

58024

6.7

T-complex protein 1 subunit zeta isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14124.14124.3	3.7017	0.1849	2316.485	2316.666	15	554.4	28.8%	1	K.DGNVLLHEMQIQHPTASLIAK.V	3
	step04.19310.19310.2	7.6967	0.5616	2208.309	2207.5527	1	2449.9	65.0%	3	K.VHAELADVLTEAVVDSILAIK.K	2 2
	step04.19308.19308.3	4.5158	0.3053	2208.705	2207.5527	1	1042.6	38.8%	4	K.VHAELADVLTEAVVDSILAIK.K	3 3
	step02.17157.17157.2	3.9455	0.4197	1768.645	1769.1206	1	1461.0	71.9%	2	R.AQLGVQAFADALLIIPK.V	2 2

Similarities: gi|58331171|ref|NP_00(3:1)

gi|27151736|ref|NP_00

324

35580

6.0

dnaJ homolog subfamily B member 2 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.1971.1971.2	2.2205	0.198	1213.197	1213.1742	4	578.6	51.5%	1	R.EGLTGTGTGPS#R.A	2
*	step02.15276.15278.3	3.5156	0.1096	2572.041	2570.658	1	783.8	26.1%	1	R.PKAQHQDPGLGGT#QEGARGEATKR.S	3

gi|24797095|ref|NP_72

316

33341

6.8

pyrroline-5-carboxylate reductase 1, mitochondrial isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.11765.11765.2	2.932	0.494	1143.423	1143.3203	1	1427.5	86.4%	2	K.GFTAAGVLAAHK.I	2 2
	step05.15200.15200.2	4.7381	0.5637	2322.104	2322.5225	1	1367.8	50.0%	1	K.DNVSSPGGATIHALHVLESGGFR.S	2 2

Similarities: gi|24797097|ref|NP_00(2:0)

gi|7705805|ref|NP_057

296

33249

9.3

28S ribosomal protein S2, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.14880.14880.2	3.0769	0.2287	1047.584	1047.3187	2	614.7	81.2%	1	R.KGIILFISR.N	2
*	step04.9029.9029.2	2.2585	0.2166	2456.073	2455.6492	30	162.7	26.1%	1	R.LQGQKEPGDQGPAHPPGADMSHSL.-	2

gi|27735107|ref|NP_77

189

21433

7.8

dnaJ homolog subfamily C member 5G [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.11057.11057.2	2.3336	0.1542	1107.618	1107.2416	2	516.1	72.2%	1	K.KGASPEDFKK.S	2
*	step03.7842.7842.2	2.2263	0.1414	1506.352	1505.4056	1	291.8	50.0%	1	K.Y#QQNVQS#QPPR.S	2

gi|42516572|ref|NP_29

11.0%

630

71670

5.1

E3 ubiquitin-protein ligase TRIM41 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.14984.14984.2	4.5788	0.3678	1887.274	1887.2423	1	1514.0	73.3%	2	R.SFRPNLQLANMVQVIR.Q	2
*	step06.13606.13606.2	2.8685	0.4153	1343.05	1343.6025	1	1097.7	90.0%	2	R.LHLPQQPLLQR.E	2
*	step03.9326.9326.2	5.0393	0.6041	2150.493	2151.3198	1	1309.3	63.9%	3	R.YQAQSSTEQTLLSPSEKPR.R	2
*	step05.15905.15905.3	6.4137	0.4671	2552.711	2552.828	1	2316.8	44.3%	3	R.LGFYNAETLAHVHTFSAAFLGER.V	3

U	gi\|47174861\|ref\|NP_06	9	17	11.0%	473	53194	10.1	suppressor of SWI4 1 homolog [Homo sapiens]
U	gi\|99028871\|ref\|NP_00	9	17	6.5%	794	87918	9.5	PPAN-P2RY11 protein [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.12873.12873.2	6.2741	0.5846	1838.728	1838.0153	1	1626.9	76.7%	3	R.NLEAYAANPHSFVFTR.G	2
step05.15623.15623.2	5.1466	0.492	1997.96	1998.3481	1	1939.5	75.0%	2	K.DCVAVAGPLGVTHFLILSK.T	2
step06.16084.16084.2	4.6542	0.4612	1991.75	1992.3971	1	870.1	62.5%	2	K.LMATMFQNLFPSINVHK.V	2
step06.16090.16090.3	4.358	0.3259	1993.177	1992.3971	1	784.9	45.3%	2	K.LMATMFQNLFPSINVHK.V	3
step06.15401.15401.2	3.861	0.0857	2007.701	2008.3965	1	595.8	56.2%	1	K.LMATM*FQNLFPSINVHK.V	2
step06.15700.15700.3	3.5715	0.1121	2008.644	2008.3965	1	989.1	42.2%	1	K.LM*ATMFQNLFPSINVHK.V	3
step06.15698.15698.2	5.0713	0.205	2009.322	2008.3965	1	644.1	62.5%	2	K.LM*ATMFQNLFPSINVHK.V	2
step06.14994.14994.2	3.5107	0.3646	2023.422	2024.3959	1	562.5	59.4%	2	K.LMATMFQNLFPSINVHK.V	2
step06.15026.15026.3	3.9346	0.3436	2024.556	2024.3959	1	1252.0	48.4%	2	K.LMATMFQNLFPSINVHK.V	3

gi|157426877|ref|NP_0

11.0%

373

40843

9.3

RNA 3'-terminal phosphate cyclase-like protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12353.12353.2	3.329	0.3274	1270.463	1270.5466	1	1106.6	72.7%	2	R.LVLSTLSGRPVK.I	2
*	step04.18540.18540.2	2.5966	0.3622	1977.084	1976.3612	1	408.0	46.9%	1	R.GIGYYLESLLCLAPFMK.H	2
*	step04.11055.11055.2	2.5175	0.242	1309.535	1309.5796	1	688.5	77.3%	1	K.VLKPIQLTDPGK.I	2

gi|45238849|ref|NP_11

10.9%

631

70031

9.7

polyadenylate-binding protein 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.13764.13767.2	3.132	0.4621	1047.136	1046.1599	1	1190.3	87.5%	2	K.GFGFVSFER.H	2 2
step01.8640.8640.2	4.4441	0.5087	1663.471	1663.8021	1	1603.2	75.0%	1	K.GFGFVCFSSPEEATK.A	2 2 2 2
step06.14082.14082.2	4.5428	0.5146	1544.568	1543.8783	1	795.3	76.9%	5	R.IVATKPLYVALAQR.K	2 2
step06.15562.15562.2	5.2863	0.4714	1637.716	1638.0137	1	1281.9	85.7%	2	R.LFPLIQAMHPTLAGK.I	2 2
step06.14741.14741.2	4.4637	0.4862	1653.728	1654.0131	1	1320.3	85.7%	2	R.LFPLIQAM*HPTLAGK.I	2 2
step04.12063.12063.3	5.4355	0.4935	1696.162	1694.9138	1	2239.5	65.0%	2	R.SKVDEAVAVLQAHQAK.E	3 3

Similarities: gi|46367787|ref|NP_00(6:0)
gi|208431833|ref|NP_0(1:5)
gi|185135971|ref|NP_0(1:5)

gi|5031741|ref|NP_005

10.9%

412

45746

6.5

dnaJ homolog subfamily A member 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.17444.17444.2	4.9195	0.6263	2994.056	2993.2397	1	518.8	36.2%	6	R.EGSGGGGGMDDIFSHIFGGGLFGFMGNQSR.S	2
*	step04.17454.17454.3	7.0174	0.5655	2994.474	2993.2397	1	2685.9	35.3%	7	R.EGSGGGGGMDDIFSHIFGGGLFGFMGNQSR.S	3
*	step03.16526.16526.3	6.5897	0.3989	3009.187	3009.239	1	3222.5	37.1%	2	R.EGSGGGGGM*DDIFSHIFGGGLFGFMGNQSR.S	3
*	step03.15795.15795.3	6.6514	0.6101	3024.805	3025.2385	1	2231.3	36.2%	1	R.EGSGGGGGMDDIFSHIFGGGLFGFMGNQSR.S	3
*	step02.16649.16649.2	4.1631	0.4138	1730.932	1731.0211	1	1426.8	67.9%	2	K.IGLVEALCGFQFTFK.H	2

U	gi\|11342680\|ref\|NP_00	2	4	10.9%	376	42293	6.4	beta-centractin [Homo sapiens]
U	gi\|5031569\|ref\|NP_005	2	4	10.9%	376	42614	6.6	alpha-centractin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.12047.12047.2	2.9098	0.348	1401.429	1401.5876	1	866.3	85.0%	2	K.YCFPNYVGRPK.H	2
	step04.14369.14369.3	6.9775	0.5266	3158.853	3159.5854	1	2205.2	37.9%	2	R.TTGVVLDSGDGVTHAVPIYEGFAMPHSIMR.V	3

gi|115298668|ref|NP_0

10.9%

357

39311

8.1

U5 small nuclear ribonucleoprotein 40 kDa protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.9893.9893.2	2.9209	0.2982	1333.495	1333.4767	1	873.4	75.0%	1	K.IFQGNVHNFEK.N	2
*	step06.14029.14029.3	7.2546	0.4933	2959.904	2959.2625	1	2211.4	38.0%	2	K.LPGHAGSINEVAFHPDEPIIISASSDKR.L	3

U	gi\|11024714\|ref\|NP_06	2	6	10.9%	229	25762	7.4	polyubiquitin-B precursor [Homo sapiens]
U	gi\|77539055\|ref\|NP_00	2	3	19.5%	128	14728	9.8	ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens]
U	gi\|67191208\|ref\|NP_06	2	6	3.6%	685	77029	7.7	polyubiquitin-C [Homo sapiens]
U	gi\|4507761\|ref\|NP_003	2	3	19.5%	128	14728	9.8	ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.7522.7522.2	3.2257	0.3891	1788.559	1788.9744	1	1138.4	73.3%	2	K.TITLEVEPSDTIENVK.A	2 2
	step03.11456.11456.2	2.7883	0.3499	1068.511	1068.2517	1	379.4	93.8%	4	K.ESTLHLVLR.L	2 2

Similarities: gi|208022622|ref|NP_0(2:0)

gi|68509926|ref|NP_00

10.7%

795

90933

7.5

putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.10833.10833.2	2.2284	0.1614	1809.424	1808.9066	151	151.3	25.0%	1	R.SDLKVIVMS#AT#LDAGK.F	2
*	step03.13948.13948.2	2.793	0.3092	2647.026	2647.9226	1	336.8	38.1%	1	R.THPVEIFYTPEPERDYLEAAIR.T	2
*	step04.14204.14204.2	3.7098	0.334	1430.634	1429.7305	1	1168.8	75.0%	1	R.IRVESLLVTAISK.A	2
*	step04.12568.12568.2	2.6849	0.3056	1286.511	1286.546	1	435.9	68.2%	1	R.SNLGSVVLQLKK.L	2
*	step02.16804.16805.2	3.077	0.3574	2530.149	2530.904	1	350.2	35.7%	2	K.LGIDDLVHFDFMDPPAPETLMR.A	2
*	step02.16781.16781.3	4.1506	0.289	2530.75	2530.904	1	1479.5	44.0%	1	K.LGIDDLVHFDFMDPPAPETLMR.A	3

gi|13129006|ref|NP_07

10.7%

737

82565

9.2

ATP-dependent RNA helicase DDX50 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.8139.8139.2	4.5133	0.4732	1670.359	1669.8132	1	1051.0	71.4%	3	K.EGAFSNFPISEETIK.L	2 2
*	step03.8460.8460.2	3.1474	0.3249	1293.895	1294.4387	1	921.5	75.0%	2	K.SRYEQVDLVGK.M	2
*	step04.14678.14678.2	2.9965	0.1611	2072.833	2073.297	5	197.6	36.1%	1	R.SLASVSYAAVDFFRPSAQR.L	2
*	step04.15884.15884.2	5.3164	0.613	2112.072	2112.3315	1	2156.2	61.9%	3	K.GAVDALAAALAHISGASSFEPR.S	2
*	step04.15872.15872.3	4.6028	0.5338	2112.349	2112.3315	1	1424.7	44.0%	4	K.GAVDALAAALAHISGASSFEPR.S	3
*	step04.9149.9149.2	3.4067	0.3569	1304.39	1304.4783	1	1009.9	81.8%	2	R.KLSSNAVSQITR.M	2

Similarities: gi|50659095|ref|NP_00(1:5)

gi|116812577|ref|NP_0

10.7%

392

46514

10.0

putative RNA-binding protein Luc7-like 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12056.12056.2	4.8535	0.4679	1866.387	1867.0433	1	2989.2	83.3%	1	K.SHLLNCCPHDVLSGTR.M	2
	step03.10839.10839.2	2.9053	0.2412	2064.648	2065.2202	3	333.3	50.0%	2	R.VCEVCSAYLGLHDNDRR.L	2
*	step05.15199.15199.1	1.9328	0.2779	1097.879	1098.3226	4	237.4	50.0%	2	K.LHLGFIEIR.E	1
*	step05.15196.15196.2	2.9841	0.2968	1098.077	1098.3226	1	1097.7	93.8%	2	K.LHLGFIEIR.E	2

gi|9506689|ref|NP_061

10.6%

245

26383

6.5

exosome complex exonuclease RRP41 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.11772.11772.2	2.4675	0.4016	1324.986	1325.5409	1	778.2	68.2%	1	K.ALAVVYGPHEIR.G	2
*	step04.14171.14171.2	2.9442	0.3288	1625.947	1625.8531	1	449.3	73.1%	2	R.QTFEAAILTQLHPR.S	2

gi|4504733|ref|NP_003

1257

133767

8.4

insulin receptor substrate 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.16797.16797.3	4.6547	0.5759	3348.427	3347.8008	1	839.9	33.9%	2	R.STVIGPGELWMQVDDCVVAQNMHELFLEK.M	3
*	step06.15527.15527.2	3.3833	0.3351	1545.748	1544.8248	1	629.6	65.4%	2	R.HLGLVPLEPGGWLR.R	2
*	step06.12839.12839.2	3.1199	0.2408	1381.597	1380.53	1	543.5	72.2%	1	R.SRFEQFCHLR.A	2
*	step04.10241.10241.2	2.2829	0.2975	1137.555	1137.266	1	998.2	85.7%	1	R.FEQFCHLR.A	2
*	step01.7698.7698.2	3.6862	0.4509	1455.924	1454.5876	1	814.3	66.7%	1	R.AIGDGEDEMLFTR.R	2
*	step04.8457.8457.2	2.7828	0.4531	1328.417	1327.4705	1	569.8	72.7%	3	R.FVTPSEPVAHSR.R	2
*	step06.14053.14053.2	3.4143	0.4483	1237.639	1237.4353	1	740.0	85.0%	2	R.RAVSVPASFFR.R	2
*	step03.14326.14326.2	2.4319	0.1256	2009.811	2010.2252	47	213.9	33.3%	1	R.AVSVPAS#FFRRLAPSPAR.P	2
*	step03.15141.15141.2	2.8916	0.3725	1588.579	1588.7467	1	864.4	75.0%	2	K.SWSSYFSLPNPFR.S	2
*	step03.7528.7528.2	4.8751	0.5211	2062.161	2062.1497	1	1262.5	57.1%	2	R.GAQDVAGGSNPGAHNPSANLAR.G	2

gi|28076869|ref|NP_00

390

44854

6.2

serpin B4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.14124.14124.2	2.8639	0.3355	2822.634	2823.91	85	166.8	20.0%	1	-.MNS#LS#EANT#KFMFDLFQQFRK.S	2
*	step03.16004.16004.2	2.4628	0.1632	2546.009	2547.3547	44	149.6	20.0%	1	K.KFYQT#S#VES#TDFANAPEESR.K	2

gi|226530908|ref|NP_0

285

30315

7.5

protein-L-isoaspartate(D-aspartate) O-methyltransferase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13888.13888.2	3.3371	0.3056	1526.046	1525.7522	1	520.7	75.0%	2	K.TDKVFEVMLATDR.S	2
*	step06.13876.13876.2	2.868	0.3051	1994.941	1995.4359	1	532.9	62.5%	1	K.MKPLMGVIYVPLTDKEK.Q	2

gi|72534660|ref|NP_00

238

27367

11.8

serine/arginine-rich splicing factor 7 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.14387.14387.2	3.651	0.4244	1622.523	1622.7615	1	1005.5	73.1%	2	R.NPPGFAFVEFEDPR.D	2 2
*	step04.10883.10883.2	3.2614	0.2932	1245.373	1245.4775	1	1404.9	85.0%	1	R.VRVELSTGMPR.R	2

Similarities: gi|4506901|ref|NP_003(1:1)

gi|4502891|ref|NP_001

237

26215

4.1

methylosome subunit pICln [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.16330.16330.3	5.9655	0.5947	2721.075	2721.0598	1	1483.6	41.7%	4	R.LSWLDGSGLGFSLEYPTISLHALSR.D	3
*	step06.16320.16320.2	4.5429	0.5777	2721.246	2721.0598	1	856.8	43.8%	2	R.LSWLDGSGLGFSLEYPTISLHALSR.D	2

gi|38455427|ref|NP_00

10.4%

539

57924

7.8

T-complex protein 1 subunit delta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13365.13365.3	5.4272	0.5687	3408.631	3408.7805	1	376.1	27.5%	2	K.GIEILTDM*SRPVELSDRETLLNSATTSLNSK.V	3
*	step02.15974.15974.2	4.5049	0.4477	1457.6	1457.656	1	2414.8	83.3%	2	R.DALSDLALHFLNK.M	2
*	step02.12064.12064.2	2.5995	0.2631	1567.476	1567.7158	1	1042.3	72.7%	1	K.DIEREDIEFICK.T	2

U	gi\|38569503\|ref\|NP_68	4	7	10.4%	491	55217	9.7	probable ATP-dependent RNA helicase DDX52 isoform b [Homo sapiens]
U	gi\|38569505\|ref\|NP_00	4	7	8.5%	599	67498	9.7	probable ATP-dependent RNA helicase DDX52 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.16841.16841.2	3.5906	0.3784	1475.371	1475.8641	1	1209.0	79.2%	2	K.TLAFSIPILMQLK.Q	2
step04.12342.12342.2	3.6925	0.3924	1304.459	1304.5199	1	1765.0	85.0%	2	K.KFDILVTTPNR.L	2
step02.14388.14388.2	3.7286	0.4288	1666.725	1666.8988	1	1607.9	76.9%	2	K.AITFFTEDDKPLLR.S	2
step03.9252.9252.2	2.3801	0.2019	1779.35	1780.6732	69	108.2	25.0%	1	R.ES#IST#T#PKCFLEK.A	2

gi|156415992|ref|NP_0

10.4%

346

39543

9.3

dimethyladenosine transferase 1, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12428.12428.2	5.8499	0.5354	2234.6	2235.4846	1	1302.7	57.1%	1	R.KAGNLTNAYVYEVGPGPGGITR.S	2
*	step02.11981.11981.2	6.0339	0.6346	2107.802	2107.3118	1	1479.5	67.5%	2	K.AGNLTNAYVYEVGPGPGGITR.S	2
*	step03.13600.13600.2	2.9327	0.3089	1622.097	1622.8907	1	449.8	61.5%	3	R.LLELADIDPTLRPR.Q	2

U	gi\|4506129\|ref\|NP_002	2	3	10.4%	318	34769	6.6	ribose-phosphate pyrophosphokinase 2 isoform 2 [Homo sapiens]
U	gi\|84875539\|ref\|NP_00	2	3	10.3%	321	35054	6.4	ribose-phosphate pyrophosphokinase 2 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.15208.15208.2	5.1334	0.5566	1802.822	1803.097	1	2745.1	87.5%	2	K.VYAILTHGIFSGPAISR.I	2 2
	step04.14682.14682.2	3.2158	0.5199	1787.593	1787.953	1	826.6	73.3%	1	R.THNGESVSYLFSHVPL.-	2 2

Similarities: gi|28557709|ref|NP_78(2:0)

gi|9994179|ref|NP_037

10.4%

308

33870

4.8

SAP30-binding protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14247.14247.2	2.7628	0.3211	2262.747	2262.3962	47	165.3	30.6%	1	K.DMFDPHGWSEDSYYEALAK.A	2
*	step04.12444.12444.2	2.7887	0.3496	1317.403	1317.6001	1	1062.2	79.2%	2	K.TTVISAVGTIVKK.A	2

U	gi\|15147333\|ref\|NP_05	7	12	10.2%	964	107906	5.2	E3 ubiquitin-protein ligase TRIM37 [Homo sapiens]
U	gi\|52487176\|ref\|NP_00	7	12	10.2%	964	107906	5.2	E3 ubiquitin-protein ligase TRIM37 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.18659.18659.3	4.6339	0.3619	2597.518	2597.8604	1	1204.4	36.9%	2	K.TSLTQETELLESLLQEVEHQLR.S	3
step03.18660.18662.2	4.9543	0.4661	2597.576	2597.8604	1	1722.9	57.1%	3	K.TSLTQETELLESLLQEVEHQLR.S	2
step05.15359.15359.3	8.0389	0.567	3150.964	3150.45	1	2908.6	42.0%	1	K.SRDQHWYITQLEAAQTSYIQQINNLK.E	3
step06.15332.15332.2	2.6578	0.4452	2869.195	2870.2122	1	202.8	28.0%	2	R.SSIENLWGLQPRPPASLLQPTASYSR.K	2
step06.15311.15311.3	5.2886	0.5692	2870.084	2870.2122	1	1130.7	38.0%	2	R.SSIENLWGLQPRPPASLLQPTASYSR.K	3
step03.19984.19984.2	2.2031	0.1332	1328.649	1328.3882	37	306.9	40.0%	1	K.TDVKNT#LSEIK.S	2
step04.13082.13082.2	2.6269	0.2936	1334.374	1334.5891	1	1013.5	70.8%	1	R.ALIHGSIGDILPK.T	2

U	gi\|157151755\|ref\|NP_0	3	5	10.2%	322	35564	9.6	ribonuclease P protein subunit p30 isoform a [Homo sapiens]
U	gi\|5454024\|ref\|NP_006	3	5	12.3%	268	29321	8.9	ribonuclease P protein subunit p30 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.14891.14891.2	5.2011	0.5371	2555.03	2555.9944	1	1654.3	59.1%	1	K.KQEIEKPVAVSELFTTLPIVQGK.S	2
step04.14874.14876.3	4.8919	0.4301	2555.562	2555.9944	1	963.3	37.5%	2	K.KQEIEKPVAVSELFTTLPIVQGK.S	3
step06.11908.11908.2	2.6723	0.1422	1150.991	1151.3439	3	305.7	66.7%	2	K.RPPINVAIDR.G	2

gi|224589071|ref|NP_0

10.1%

1282

145807

6.4

ribosome biogenesis protein BMS1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14934.14934.2	2.6835	0.368	1770.823	1771.1998	1	432.3	62.5%	2	R.TPLEPPPIVVVVMGPPK.V	2
*	step04.13716.13716.2	4.1496	0.4313	1362.795	1361.6349	1	1608.8	90.9%	2	K.IMGVLTHLDSFK.H	2
*	step05.14837.14837.3	6.2594	0.5679	2606.814	2606.9004	1	1333.9	42.9%	2	K.LFYLSGMVHGEYQNQEIHNLGR.F	3
*	step02.14777.14777.2	4.7288	0.3969	2523.867	2524.6318	1	2269.8	64.3%	2	K.VLAEDEELYGDFEDLETGDVHK.G	2
*	step04.12328.12328.2	2.7455	0.1437	1602.443	1602.8416	1	734.0	66.7%	2	R.VQYEGFRPGMYVR.I	2
*	step05.14758.14758.2	3.5894	0.2502	1433.22	1433.6394	1	1025.8	81.8%	2	K.SRDPIIFSVGWR.R	2
*	step05.14479.14479.2	2.6463	0.3272	2022.76	2023.2397	12	201.4	36.7%	1	R.RFQTIPLYYIEDHNGR.Q	2
*	step05.14480.14480.3	3.5127	0.3575	2022.802	2023.2397	1	1304.3	43.3%	1	R.RFQTIPLYYIEDHNGR.Q	2 3
*	step03.13370.13370.2	2.79	0.2956	1866.834	1867.0533	1	497.7	64.3%	2	R.FQTIPLYYIEDHNGR.Q	2
*	step06.15798.15798.3	5.1514	0.4638	1738.246	1738.0648	1	1634.7	56.7%	1	R.KILALLDALSTVHSQK.M	3
*	step06.15882.15882.2	5.441	0.4852	1738.841	1738.0648	1	2587.5	86.7%	2	R.KILALLDALSTVHSQK.M	2
*	step04.15072.15072.2	4.8349	0.4694	1609.691	1609.892	1	2040.3	82.1%	1	K.ILALLDALSTVHSQK.M	2

gi|193211480|ref|NP_0

1042

117805

6.5

superkiller viralicidic activity 2-like 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.12756.12756.3	5.2458	0.501	3169.768	3168.494	1	1521.1	31.5%	1	K.VQSVETVEGCTHEVALPAEEDYLPLKPR.V	3
*	step04.14770.14770.2	3.1968	0.3792	1427.546	1427.6715	1	929.8	86.4%	2	R.NFQPVIIFSFSK.K	2
*	step06.14771.14771.2	3.0034	0.2133	1386.1	1386.7073	1	1519.3	86.4%	2	K.LPQVEHVLPLLK.R	2
*	step05.12174.12174.2	2.7613	0.4704	1275.882	1276.3837	1	997.4	81.2%	1	K.SFYQFQHYR.A	2
*	step05.17935.17935.2	3.7088	0.4701	2470.861	2470.8496	1	465.6	47.6%	1	K.KSNVKPNSGELDPLYVVEVLLR.C	2
*	step05.17878.17878.3	4.9598	0.3567	2471.143	2470.8496	1	1438.7	41.7%	2	K.KSNVKPNSGELDPLYVVEVLLR.C	3
*	step03.17798.17798.2	4.2371	0.4018	2341.984	2342.6768	1	743.9	52.5%	5	K.SNVKPNSGELDPLYVVEVLLR.C	2
*	step03.17810.17810.3	5.048	0.3054	2343.087	2342.6768	1	1391.7	38.8%	4	K.SNVKPNSGELDPLYVVEVLLR.C	3
*	step04.12729.12729.3	5.4576	0.2765	2562.714	2562.833	1	2024.0	42.5%	2	R.MYSHPLHNDPNLETVYTLCEK.K	3
*	step04.12497.12497.2	2.9345	0.4644	2578.501	2578.8323	1	487.1	45.0%	1	R.M*YSHPLHNDPNLETVYTLCEK.K	2

gi|20806097|ref|NP_07

800

92548

9.2

nucleolar complex protein 3 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13930.13930.2	3.0467	0.3588	1320.476	1319.6177	1	511.0	80.0%	2	K.ELIHLLPIKDK.S	2
*	step03.10210.10210.2	2.9403	0.167	1279.287	1279.4907	4	534.6	72.2%	1	R.NYEVRPEMLK.T	2
*	step06.15328.15328.2	5.8318	0.5981	2251.183	2251.6484	1	1835.3	67.5%	2	R.LCTLALHVLPNSSIGILATTR.I	2
*	step06.13457.13458.2	3.252	0.1015	2280.876	2280.5686	2	495.8	38.6%	1	R.FAAHLIAGAPSEGSGALKPELSR.R	2
*	step05.13186.13186.3	4.4561	0.4409	2281.707	2280.5686	1	1095.3	38.6%	2	R.FAAHLIAGAPSEGSGALKPELSR.R	3
*	step01.7480.7480.2	3.0188	0.3402	1674.292	1674.7866	2	370.2	50.0%	2	R.YSSEVATESPLDFTK.Y	2

gi|7019419|ref|NP_037

731

83655

9.2

nucleolar GTP-binding protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.11988.11988.2	4.6151	0.5741	1932.716	1933.2411	1	1527.7	79.4%	2	K.IIKPLQYQSTVASGTVAR.V	2
*	step05.12626.12626.2	2.6625	0.3291	1081.986	1082.3019	1	774.3	81.2%	1	K.LPMSLLHDR.I	2
*	step06.14658.14658.2	2.7341	0.3575	984.274	984.21954	2	863.0	92.9%	1	K.HLIFVLNK.C	2
*	step06.15824.15826.2	5.2988	0.5075	2663.153	2664.01	1	1014.3	52.2%	1	R.WVAVLSQDYPTLAFHASLTNPFGK.G	2
*	step06.15817.15817.3	4.7168	0.472	2664.623	2664.01	1	956.7	37.0%	2	R.WVAVLSQDYPTLAFHASLTNPFGK.G	3
*	step04.11922.11922.2	3.542	0.3823	1564.44	1564.7682	1	1197.5	76.9%	2	K.IKSPEDHIGAVLER.A	2

gi|21361647|ref|NP_00

530

58951

6.9

putative adenosylhomocysteinase 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13458.13458.3	3.686	0.3007	2204.168	2203.503	1	1381.9	44.1%	1	K.KQIQFADDMQEFTKFPTK.T	3
	step03.9266.9266.2	3.0322	0.3951	1283.485	1283.416	1	986.2	77.3%	2	R.GIVEESVTGVHR.L	2 2
	step04.11103.11103.2	2.2079	0.3006	1537.335	1537.7045	1	482.9	58.3%	1	R.SQVDHVIWPDGKR.V	2 2
	step03.10997.10997.2	2.6398	0.2558	1267.422	1267.498	2	607.2	72.2%	2	R.YKQDVYLLPK.K	2 2

Similarities: gi|195539337|ref|NP_0(3:1)

gi|18105007|ref|NP_00

9.9%

2225

242981

6.5

CAD protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.15206.15206.3	4.5823	0.4862	2286.821	2286.535	1	1541.1	47.4%	2	R.TLHEWLQQHGIPGLQGVDTR.E	3
*	step06.15197.15197.2	6.5341	0.5841	2286.858	2286.535	1	1282.6	68.4%	2	R.TLHEWLQQHGIPGLQGVDTR.E	2
*	step02.12236.12236.3	5.9716	0.5482	2681.75	2681.8777	1	2577.8	46.0%	1	R.MAEIGEHVAPSEAANSLEQAQAAAER.L	3
*	step02.12245.12245.2	4.4608	0.3892	2682.852	2681.8777	1	922.3	46.0%	1	R.MAEIGEHVAPSEAANSLEQAQAAAER.L	2
*	step06.13957.13957.2	3.6054	0.452	1399.887	1398.635	1	791.2	83.3%	4	R.TPHVLVLGSGVYR.I	2
*	step06.15319.15319.3	4.8861	0.2718	2447.77	2447.8608	1	1559.1	37.5%	2	K.AIVHAVGQELQVTGPFNLQLIAK.D	3
*	step06.15329.15329.2	6.3903	0.4757	2448.096	2447.8608	1	2256.9	63.6%	2	K.AIVHAVGQELQVTGPFNLQLIAK.D	2
*	step05.15392.15392.3	7.0658	0.5466	3047.113	3047.4976	1	1968.5	40.7%	1	K.AIVHAVGQELQVTGPFNLQLIAKDDQLK.V	3
*	step04.15141.15141.2	4.406	0.4406	1671.857	1672.0049	1	1237.5	75.0%	2	R.RLAADFSVPLIIDIK.C	2
*	step03.13608.13608.2	2.6499	0.3	1650.758	1650.9857	1	819.3	53.3%	2	K.LFVEALGQIGPAPPLK.V	2
*	step05.13970.13970.2	4.5787	0.5046	2543.003	2543.8127	1	1308.9	57.1%	2	R.GLPVTCEVAPHHLFLSHDDLER.L	2
*	step05.13938.13938.3	3.6824	0.4932	2543.588	2543.8127	1	956.2	46.4%	3	R.GLPVTCEVAPHHLFLSHDDLER.L	3
*	step01.8896.8896.2	2.826	0.2807	1073.336	1073.2251	1	1102.5	87.5%	1	R.LSLDDLLQR.L	2
*	step04.11734.11734.2	2.6277	0.351	1201.441	1201.3152	1	699.9	77.8%	2	K.AHWTPFEGQK.V	2
*	step05.10333.10333.2	2.337	0.2089	1037.927	1038.1857	1	413.7	83.3%	2	R.RGIPGLPDGR.F	2
*	step05.13784.13784.2	2.9685	0.3247	1669.03	1669.8895	1	805.3	61.5%	2	K.DQMSHLFNVAHTLR.M	2
*	step05.12594.12594.2	4.3733	0.4833	1685.638	1685.8889	1	959.1	80.8%	1	K.DQM*SHLFNVAHTLR.M	2
*	step06.15985.15985.3	6.16	0.5201	2692.206	2691.0386	1	2086.2	39.6%	2	R.RPVINAGDGVGEHPTQALLDIFTIR.E	3
*	step05.14760.14760.2	4.0819	0.5051	1563.568	1562.7888	1	1743.1	83.3%	2	R.TVHSLACLLTQYR.V	2

U	gi\|217272892\|ref\|NP_0	6	8	9.9%	972	109436	5.0	116 kDa U5 small nuclear ribonucleoprotein component isoform a [Homo sapiens]
U	gi\|217272894\|ref\|NP_0	6	8	10.2%	937	105384	5.2	116 kDa U5 small nuclear ribonucleoprotein component isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.13518.13518.2	2.2686	0.0909	2018.461	2019.2313	127	271.3	36.7%	1	K.TCFVDCLIEQTHPEIR.K	2
step05.14192.14192.2	3.2007	0.2213	1409.283	1409.6163	1	1025.0	85.0%	2	K.RLWGDIYFNPK.T	2
step05.15198.15198.3	4.171	0.3702	2847.46	2847.2632	1	1909.2	38.5%	1	R.YHIEVNRVPAGNWVLIEGVDQPIVK.T	3
step02.16812.16812.3	6.4422	0.5235	2872.811	2873.1816	1	1832.7	43.8%	1	K.VEESGEHVILGTGELYLDCVMHDLR.K	3
step03.15874.15874.3	3.8516	0.1881	3001.81	3001.3545	21	537.5	25.0%	1	K.VEESGEHVILGTGELYLDCVMHDLRK.M	3
step04.12394.12394.2	4.4586	0.4789	1894.935	1895.1482	1	2038.8	79.4%	2	R.GHVTQDAPIPGSPLYTIK.A	2

gi|4758700|ref|NP_004

9.9%

382

42987

7.3

MAP kinase-activated protein kinase 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19047.19047.2	2.9531	0.1268	1786.526	1785.9753	1	498.9	53.6%	3	R.EPKKYAVTDDYQLSK.Q	2
*	step02.13752.13752.2	2.2239	0.0848	2906.015	2904.8499	26	92.0	16.4%	1	R.LGQY#GFPNPEWS#EVS#EDAKQLIR.L	2

gi|13236559|ref|NP_07

9.9%

263

29412

10.0

multiple myeloma tumor-associated protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.5756.5756.2	4.1716	0.3253	1713.653	1713.8674	2	795.9	63.3%	2	R.APCAGPSREEELAAVR.E	2
*	step06.14581.14581.2	2.8521	0.3134	1167.368	1167.3451	1	794.4	77.8%	2	K.LGLSVFTHHR.V	2

gi|74319833|ref|NP_00

9.8%

2555

291075

5.9

probable ubiquitin carboxyl-terminal hydrolase FAF-Y [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step02.15592.15592.2	2.4853	0.0853	1058.39	1058.2552	7	1011.6	81.2%	2	K.GWLVDLINK.F	2 2
	step04.13596.13598.2	3.5959	0.4665	1518.506	1518.7012	1	1009.4	75.0%	1	K.FGTLNGFQILHDR.F	2 2
	step02.11914.11914.2	2.8037	0.2616	1463.789	1463.6824	1	497.8	62.5%	1	K.NEAKNDALSM*IIK.S	2 2
	step04.10066.10066.2	2.889	0.4417	1312.552	1312.4558	1	513.5	65.0%	4	K.VISSVSYYTHR.H	2 2
	step04.14750.14750.2	4.2783	0.5588	2505.923	2506.842	1	875.6	47.7%	2	K.ALTLQDLDNIWAAQAGKHEAIVK.N	2 2
	step03.12040.12040.2	3.0626	0.2639	1285.118	1285.5166	1	948.5	75.0%	1	R.TNDKWVIPALK.Q	2 2
	step03.15203.15203.2	5.201	0.5711	1716.836	1717.0026	1	2011.6	82.1%	4	R.AIDLLKEIYTNLGPR.L	2 2
	step05.12293.12293.2	2.8317	0.2478	1027.449	1027.2859	2	903.5	87.5%	1	R.KLIGQLNLK.D	2 2
	step04.10660.10660.2	2.3045	0.2053	1142.617	1142.3737	1	580.6	72.2%	1	K.LIGQLNLKDK.S	2 2
	step05.14329.14329.2	3.9858	0.5401	1314.469	1313.5732	1	1380.6	86.4%	4	K.LLLTAIGYGHVR.A	2 2
	step02.11844.11844.2	2.8411	0.4869	1294.571	1294.4786	1	460.1	80.0%	2	K.ELLAFQTSEKK.Y	2 2
	step03.15665.15665.2	3.1023	0.4305	2531.081	2531.9302	1	898.0	47.6%	2	K.NAGATCYMNSVIQQLYMIPSIR.N	2 2
	step03.10780.10780.2	2.4025	0.1877	1593.507	1593.7664	1	582.1	66.7%	1	K.TEDRKEYNIGVLR.H	2 2
	step04.19494.19494.3	7.0329	0.5569	3487.218	3486.8313	1	2410.4	31.9%	2	R.LWGEPVNLREQHDALEFFNSLVDSLDEALK.A	3 3
	step02.18884.18884.2	5.641	0.5397	2420.91	2421.6013	1	2091.4	62.5%	5	R.EQHDALEFFNSLVDSLDEALK.A	2 2
	step03.18860.18860.3	5.1264	0.3595	2422.423	2421.6013	1	1666.8	41.2%	6	R.EQHDALEFFNSLVDSLDEALK.A	3 3
	step02.10318.10318.2	3.5041	0.4308	1577.375	1577.6709	1	1320.2	73.1%	2	K.GDLLEGANAYHCEK.C	2 2
	step03.10850.10850.2	2.7187	0.0803	1187.415	1187.2454	1	810.4	85.7%	2	K.RFDYDWER.E	2 2
	step02.13703.13703.2	3.3628	0.4376	1236.146	1235.3284	1	1477.6	93.8%	2	K.FNDYFEFPR.E	2 2
	step04.13235.13235.2	2.6452	0.4317	1199.376	1199.3823	1	554.2	77.8%	3	R.FLFTTGFHTK.K	2 2
	step03.15761.15761.2	4.9616	0.372	1918.741	1919.1283	1	3213.6	85.7%	1	R.KWTWAVEWLGDELER.R	2 2
	step02.16797.16797.2	5.2509	0.4471	1791.703	1790.9553	1	1842.2	80.8%	3	K.WTWAVEWLGDELER.R	2 2

Similarities: gi|145309309|ref|NP_0(22:0)

gi|155030232|ref|NP_0

9.8%

1130

119700

4.3

proline-, glutamic acid- and leucine-rich protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16679.16679.3	4.0974	0.3948	1539.779	1538.8568	1	2247.7	59.6%	2	R.LLLLESVSGLLQPR.T	3
*	step05.15367.15367.2	5.7994	0.5452	2293.06	2293.5688	1	3549.2	71.7%	2	R.LHGSVGGAQNLSALGALVSLSNAR.L	2
*	step06.16772.16772.3	4.3801	0.4046	3312.649	3311.813	1	392.4	25.9%	2	R.DISMNHLPGLLTSLLGLRPECEQSALEGMK.A	3
*	step04.12142.12142.2	2.4344	0.0821	1830.602	1830.0392	3	259.6	35.6%	1	K.LKLDVGEAMAPPS#HRK.G	2
*	step04.15176.15176.3	7.0953	0.586	2885.492	2884.3005	1	2493.4	44.2%	2	R.LHDLVLPLVMGVQQGEVLGSSPYTSSR.C	3
*	step04.14439.14439.3	5.8393	0.5719	2900.516	2900.2998	1	1976.2	36.5%	2	R.LHDLVLPLVM*GVQQGEVLGSSPYTSSR.C	3

gi|13514831|ref|NP_00

9.8%

875

100888

8.6

probable ATP-dependent RNA helicase DDX10 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18564.18564.3	4.0386	0.4971	1606.182	1605.945	1	1862.0	55.8%	2	K.TLAFLVPVLEALYR.L	3
*	step02.18548.18548.2	4.5907	0.4851	1606.679	1605.945	1	1082.0	84.6%	2	K.TLAFLVPVLEALYR.L	2
*	step02.15016.15016.2	3.9265	0.3528	1818.845	1819.0884	1	1446.7	73.3%	2	R.YKEDGEALLILLPSEK.A	2
*	step03.10516.10516.2	3.0125	0.1531	1885.684	1885.0651	2	275.7	45.2%	2	R.SVY#LM*KDKEVFDVSK.L	2
*	step02.13905.13905.3	4.1621	0.4729	2668.238	2667.8625	1	544.9	34.5%	1	K.IKEVPTQFLDRDEEEEDADFLK.V	3
*	step02.9729.9729.2	5.2105	0.6118	2029.679	2029.1083	1	1896.9	69.4%	2	K.SAIKDAEEDDDTGGINLHK.A	2

U	gi\|310114661\|ref\|XP_0	4	9	9.8%	358	41049	4.9	PREDICTED: protein SET-like [Homo sapiens]
U	gi\|310127914\|ref\|XP_0	4	9	9.8%	358	41049	4.9	PREDICTED: protein SET-like [Homo sapiens]
U	gi\|310119431\|ref\|XP_0	4	9	9.1%	385	43809	4.7	PREDICTED: protein SET-like [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.13060.13060.2	2.313	0.1646	1063.371	1064.2648	1	652.1	78.6%	2	K.LRQPFFQK.R	2 2 2
step01.7232.7232.2	3.772	0.3768	1209.185	1209.3274	1	1067.3	88.9%	4	R.VEVTEFEDIK.S	2 2 2
step02.12051.12051.2	4.1592	0.4703	1672.757	1672.8171	1	1054.7	76.9%	2	R.VEVTEFEDIKSGYR.V	2 2 2
step02.7900.7900.2	2.8309	0.1981	1447.263	1446.5038	2	717.4	79.2%	1	K.EFHLNESGNPSSK.S	2

Similarities: gi|170763500|ref|NP_0(3:1)
gi|170763498|ref|NP_0(3:1)

gi|4758012|ref|NP_004

9.7%

1675

191613

5.7

clathrin heavy chain 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.7742.7742.2	2.7399	0.369	1574.311	1574.7848	1	353.9	57.1%	2	R.RPISADSAIM*NPASK.V	2
*	step04.11355.11355.2	4.3947	0.4909	1519.39	1519.6809	1	838.3	87.5%	2	R.HSSLAGCQIINYR.T	2
*	step05.12360.12360.2	3.6307	0.513	1846.382	1846.0789	1	1360.9	68.8%	2	R.KVSQPIEGHAASFAQFK.M	2
*	step06.13763.13763.2	4.1719	0.4986	1945.508	1946.2383	1	1118.7	70.6%	1	K.LHIIEVGTPPTGNQPFPK.K	2
*	step03.13138.13138.2	3.4937	0.3888	2355.645	2354.6475	6	210.2	29.5%	1	R.ISGETIFVTAPHEATAGIIGVNR.K	2
	step05.16182.16182.2	4.2504	0.4205	1608.68	1608.9073	1	1882.9	91.7%	1	K.KVGYTPDWIFLLR.N	2
*	step05.15878.15878.3	4.647	0.2302	3145.752	3146.6133	5	443.5	29.8%	1	R.LLEMNLMHAPQVADAILGNQM*FTHYDR.A	3
*	step04.15810.15810.3	6.4151	0.5212	2369.664	2369.662	1	1522.3	45.0%	1	R.KFDVNTSAVQVLIEHIGNLDR.A	3
*	step06.16658.16658.2	5.552	0.5998	1985.909	1986.4128	1	1315.8	66.7%	1	R.HNIMDFAMPYFIQVMK.E	2

gi|55769546|ref|NP_06

9.7%

392

43964

8.9

p21-activated protein kinase-interacting protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.12320.12320.2	2.8443	0.2169	1370.913	1371.5664	1	641.8	70.8%	2	K.GQVTFLSIHPSGK.L	2
*	step04.14435.14435.3	6.4287	0.5211	2821.758	2821.1997	1	2303.4	39.6%	2	R.VKDMFSFEIPEHHVIVSASSDGFIK.M	3

U	gi\|21626466\|ref\|NP_06	7	12	9.6%	847	94623	6.3	matrin-3 isoform a [Homo sapiens]
U	gi\|62750354\|ref\|NP_95	7	12	9.6%	847	94623	6.3	matrin-3 isoform a [Homo sapiens]
U	gi\|303227926\|ref\|NP_0	7	12	9.6%	847	94623	6.3	matrin-3 isoform a [Homo sapiens]
U	gi\|303227924\|ref\|NP_0	7	12	9.6%	847	94623	6.3	matrin-3 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.16120.16120.2	2.5659	0.3146	1622.0	1620.9579	1	350.4	65.4%	1	K.ITPENLPQILLQLK.R	2
step04.12239.12239.2	2.5815	0.374	1145.702	1145.3596	1	839.8	93.8%	1	R.VVHIMDFQR.G	2 2
step06.16516.16516.2	4.7894	0.4808	2439.208	2439.8804	1	847.5	55.0%	2	R.YQLLQLVEPFGVISNHLILNK.I	2 2
step06.16522.16522.3	3.7717	0.3067	2440.664	2439.8804	1	552.2	32.5%	3	R.YQLLQLVEPFGVISNHLILNK.I	3 3
step06.13576.13576.2	5.2953	0.5063	2037.84	2038.2926	1	1379.8	69.4%	2	R.VIHLSNLPHSGYSDSAVLK.L	2 2
step06.13579.13579.3	4.226	0.5164	2038.854	2038.2926	1	704.5	40.3%	1	R.VIHLSNLPHSGYSDSAVLK.L	3 3
step02.14183.14183.2	3.9691	0.3545	1970.641	1970.2998	1	578.9	55.9%	2	R.IGPYQPNVPVGIDYVIPK.T	2 2

Similarities: gi|303227928|ref|NP_0(6:1)

gi|153791300|ref|NP_0

9.6%

687

79871

9.2

protein SDA1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14339.14339.2	2.3493	0.1188	1949.101	1949.2438	51	166.2	43.8%	1	R.NNNKLPSNLPQLQNLIK.R	2
*	step04.14760.14760.2	5.1373	0.564	2312.776	2312.5244	1	810.5	55.9%	1	K.RDPPAYIEEFLQQYNHYK.S	2
*	step04.14727.14727.3	6.8727	0.5482	2312.875	2312.5244	1	2157.5	51.5%	2	K.RDPPAYIEEFLQQYNHYK.S	3
*	step04.1811.1811.2	5.3288	0.5664	2052.531	2053.3887	1	2288.8	81.2%	2	K.NLINPSSLLELFFELFR.C	2
*	step03.16306.16306.2	4.0899	0.4833	1728.752	1729.1034	1	2059.5	76.9%	1	K.VNVVLQNFMYTMLR.D	2

U	gi\|281182828\|ref\|NP_0	2	3	9.6%	355	40064	4.8	intraflagellar transport protein 46 homolog isoform 1 [Homo sapiens]
U	gi\|281182834\|ref\|NP_0	2	3	11.2%	304	34286	4.5	intraflagellar transport protein 46 homolog isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.17513.17513.3	4.1394	0.3739	2217.026	2217.634	1	1288.7	46.1%	2	K.LKPFIPDFIPAVGDIDAFLK.V	3
	step03.14333.14333.2	2.2877	0.158	1672.182	1670.8475	31	239.3	42.3%	1	K.AIDTWIESISELHR.S	2

gi|7657198|ref|NP_055

9.6%

313

35236

10.0

probable dimethyladenosine transferase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14232.14232.2	4.0954	0.5024	1744.764	1745.0394	1	1001.2	62.5%	2	K.SAGGLMFNTGIGQHILK.N	2
*	step05.13524.13524.2	3.5151	0.3356	1760.591	1761.0388	1	625.2	56.2%	1	K.SAGGLM*FNTGIGQHILK.N	2
*	step04.13104.13104.2	2.5422	0.4917	1442.23	1442.6031	1	648.8	66.7%	1	R.LLHGFNAEGIHFS.-	2

gi|76880486|ref|NP_00

9.5%

2202

251458

7.1

activating signal cointegrator 1 complex subunit 3 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.9965.9965.3	4.9492	0.3326	2507.999	2507.7322	1	1672.0	40.5%	1	K.ILGENAKPNYGCQVTIQSEQEK.Q	3
*	step05.11885.11885.2	2.5541	0.334	1791.235	1789.9924	2	312.6	50.0%	1	K.IHYPHVYDSQAEAMK.T	2
*	step02.17132.17132.3	7.144	0.5312	3498.478	3498.9854	1	1255.5	36.2%	5	R.IPYSEPMPLSFEEKPVYIQDLDEIGQLAFK.G	3
*	step02.16876.16876.3	6.0897	0.5144	3514.437	3514.9849	1	1711.9	35.3%	2	R.IPYSEPM*PLSFEEKPVYIQDLDEIGQLAFK.G	3
*	step04.14516.14516.2	4.4198	0.4143	1511.815	1511.8151	1	2105.4	83.3%	3	K.TNIAMLTVLHEIR.Q	2
*	step05.13832.13832.2	2.5496	0.2555	1138.673	1138.4282	1	948.3	83.3%	1	R.RLEPLGIIVK.E	2
*	step05.16224.16224.3	5.055	0.3593	2737.493	2738.1782	1	1685.3	35.9%	1	R.LLILDEVHLLHEDRGPVLESIVAR.T	3
*	step06.15212.15212.3	4.8577	0.4736	2478.306	2478.739	1	1069.2	42.5%	1	K.NCGHIPFFFPTQGHDYVLAEK.Q	3
*	step06.15217.15217.2	4.1008	0.4866	2478.645	2478.739	1	715.8	55.0%	1	K.NCGHIPFFFPTQGHDYVLAEK.Q	2
*	step05.14647.14647.2	2.596	0.2556	1827.765	1828.087	1	462.0	66.7%	2	R.ELFPDGFSIHHAGMLR.Q	2
*	step04.14196.14196.2	3.9243	0.3931	1485.376	1485.6694	1	1652.0	87.5%	2	R.NLVENLFSNGHIK.V	2
*	step06.17402.17402.2	3.0516	0.3682	2024.381	2024.3757	1	432.5	47.1%	1	K.RGSFVDLGILDVMQIFGR.A	2
*	step04.10157.10157.2	3.0653	0.4866	1171.543	1171.3304	1	804.4	85.0%	2	R.ANPLAYGISHK.A	2
*	step06.14833.14833.2	2.6881	0.2775	1926.481	1926.124	1	387.4	46.9%	1	R.NHHVASLSFYTPEIPGR.Y	2

gi|40217805|ref|NP_07

9.5%

702

79277

9.2

nucleolar protein 9 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12545.12545.2	2.9338	0.4145	1283.567	1283.5039	1	608.9	75.0%	2	R.LLSPSHVVQFR.S	2
*	step06.15404.15404.3	4.3225	0.4437	2653.943	2654.01	1	1608.5	34.8%	1	R.ITHSDVAPTHILYAVNASWVGLCK.I	3
*	step04.13166.13166.2	3.9605	0.2059	1677.609	1677.968	1	949.5	65.4%	2	R.LYHILTPVPPEELR.T	2
*	step05.15271.15271.3	3.6069	0.383	1980.077	1979.3829	1	955.0	54.4%	1	R.TVNCLLVGAIAIPHCVLK.C	3

gi|41327776|ref|NP_95

9.4%

406

45169

9.2

probable ATP-dependent RNA helicase DDX47 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.17619.17619.3	4.5722	0.4474	1927.447	1926.2485	1	1934.6	48.5%	2	K.TGAFALPILNALLETPQR.L	3 3
	step04.14268.14268.2	4.1667	0.4733	2202.998	2203.4827	1	1579.2	57.9%	1	R.GLDIPHVDVVVNFDIPTHSK.D	2 2

Similarities: gi|20149629|ref|NP_05(2:0)

gi|21361454|ref|NP_03

9.4%

320

33637

7.8

pyrroline-5-carboxylate reductase 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.12292.12292.2	2.9813	0.4253	1173.479	1173.3463	1	969.4	77.3%	2	R.GFTAAGILSAHK.I	2
*	step04.10811.10811.2	3.1532	0.4702	1828.739	1829.0848	1	1168.5	55.9%	1	R.VKLESPTVSTLTPSSPGK.L	2

gi|41872631|ref|NP_00

9.3%

2511

273424

6.4

fatty acid synthase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18088.18088.3	5.353	0.4796	3164.927	3165.3938	1	1391.4	31.7%	1	K.LPESENLQEFWDNLIGGVDMVTDDDRR.W	3
*	step02.17664.17664.3	4.0443	0.2752	3181.083	3181.3933	1	835.7	29.8%	1	K.LPESENLQEFWDNLIGGVDM*VTDDDRR.W	3
*	step04.17064.17064.2	5.2969	0.4617	2718.338	2718.1477	1	915.3	50.0%	1	R.HSQDLAFLSMLNDIAAVPATAMPFR.G	2
*	step05.15626.15626.3	4.3973	0.4763	3045.12	3045.4172	1	600.1	31.7%	1	R.GGPEVQQVPAGERPLWFICSGMGTQWR.G	3
*	step04.13164.13164.2	2.2925	0.2405	1970.092	1970.1769	1	250.9	50.0%	1	R.WLSTSIPEAQWHSSLAR.T	2
*	step06.15247.15247.2	4.3963	0.5625	2473.01	2473.8137	1	1187.9	59.1%	2	R.LHLSGIDANPNALFPPVEFPAPR.G	2
*	step04.17850.17852.2	4.6075	0.4	2787.241	2787.2893	1	466.6	40.0%	2	R.ALGLGVEQLPVVFEDVVLHQATILPK.T	2
*	step01.15010.15010.2	2.4328	0.2194	1779.775	1779.0674	3	321.5	43.8%	1	K.LPEDPLLSGLLDSPALK.A	2
*	step05.16070.16070.2	2.8295	0.2533	1369.677	1369.6367	1	496.5	77.3%	1	R.EGGFLLLHTLLR.G	2
*	step03.13581.13581.2	2.9846	0.362	2668.031	2668.942	1	556.1	40.9%	2	R.HFLLEEDKPEEPTAHAFVSTLTR.G	2
*	step05.18654.18654.2	4.1206	0.3542	1406.823	1406.6554	1	1404.2	75.0%	6	R.DLVEAVAHILGIR.D	2
*	step03.17938.17938.3	3.9455	0.5697	2424.231	2423.748	1	819.9	35.2%	2	R.TLLEGSGLESIISIIHSSLAEPR.V	3

gi|27597061|ref|NP_05

9.3%

1755

200537

6.2

E3 ubiquitin-protein ligase UBR2 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.11998.11998.2	3.4106	0.348	1483.959	1484.6832	1	780.6	81.8%	4	R.EVYQHLAHYVPK.I	2 2
	step02.17164.17164.2	4.608	0.4259	1751.757	1751.0189	1	852.4	56.7%	1	K.LLSWLGSIIGYSDGLR.R	2 2
	step06.16304.16304.2	2.6434	0.2919	1906.989	1907.2053	3	287.4	40.6%	1	K.LLSWLGSIIGYSDGLRR.I	2 2
*	step03.12855.12855.2	3.2671	0.3934	1836.562	1837.0654	1	778.7	71.4%	1	K.YVLISKPTEWSDELR.Q	2
*	step05.14906.14906.2	3.1415	0.4994	1164.526	1164.4657	1	1133.9	85.0%	1	R.LLAGLHVLLSK.S	2
*	step03.14532.14532.2	3.4772	0.3946	1864.618	1865.0774	1	1262.3	71.4%	1	R.FELYQIFSTPDYGKR.F	2
*	step06.14048.14048.2	4.3155	0.4139	2073.766	2074.476	1	1037.6	64.7%	2	R.EIIHQLSIKPMAHSELVK.S	2
*	step05.15919.15919.3	4.3549	0.4027	3000.386	3001.471	1	582.9	31.0%	2	K.NSPSILAM*LETLQNAPYLEVHKDMIR.W	3
*	step05.16972.16972.3	5.2856	0.5176	3001.497	3001.471	1	1946.7	41.0%	2	K.NSPSILAMLETLQNAPYLEVHKDM*IR.W	3
*	step03.13066.13066.3	4.3317	0.4888	2489.468	2488.6973	1	1008.8	36.2%	2	K.NSENVDELQLPEGFRPDFRPK.I	3
*	step05.15312.15312.3	6.8112	0.4183	3378.216	3378.658	1	3414.5	42.9%	2	K.LWHQHSVTEEIGHAQEANQTLVGIDWQHL.-	3

Similarities: gi|296317280|ref|NP_0(3:8)

U	gi\|212274337\|ref\|NP_0	2	4	9.3%	399	45283	7.8	lanC-like protein 1 [Homo sapiens]
U	gi\|5174445\|ref\|NP_006	2	4	9.3%	399	45283	7.8	lanC-like protein 1 [Homo sapiens]
U	gi\|212274477\|ref\|NP_0	2	4	9.3%	399	45283	7.8	lanC-like protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.15973.15973.2	5.0693	0.5714	2205.188	2204.547	1	979.4	55.0%	2	R.SITFLCGDAGPLAVAAVLYHK.M	2
	step06.13625.13625.2	4.6258	0.4266	1887.716	1887.2058	1	1751.8	83.3%	2	K.LHSLVKPSVDYVCQLK.F	2

U	gi\|14861834\|ref\|NP_14	2	2	9.2%	423	46321	8.1	cat eye syndrome chromosome region, candidate 5 isoform 2 precursor [Homo sapiens]
U	gi\|21914862\|ref\|NP_06	2	2	9.9%	393	43588	6.9	cat eye syndrome chromosome region, candidate 5 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.11385.11385.2	3.3445	0.4529	2025.502	2024.3112	1	310.4	41.7%	1	R.MLVSGQGPVMENAQGLGFR.N	2
	step05.11627.11627.2	2.426	0.1827	2114.988	2114.266	18	297.5	34.2%	1	R.NPQSTEPVLGGGEPPFHGHR.D	2

gi|21071028|ref|NP_03

9.2%

131

14806

5.0

acidic leucine-rich nuclear phosphoprotein 32 family member D [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step03.11008.11008.2	3.3751	0.3117	1258.604	1257.5015	1	1351.6	90.0%	2	K.IKDLSTIEPLK.K	2 2 2 2
2	step04.11835.11835.2	3.9325	0.2328	1386.57	1385.6744	1	1449.0	81.8%	4	K.IKDLSTIEPLKK.L	2 2 2 2

Similarities: gi|5454088|ref|NP_006(2:0)
gi|5453880|ref|NP_006(2:0)
gi|310110798|ref|XP_0(2:0)

U	gi\|225007648\|ref\|NP_0	7	10	9.1%	1024	114709	9.2	ribonucleases P/MRP protein subunit POP1 [Homo sapiens]
U	gi\|225007652\|ref\|NP_0	7	10	9.1%	1024	114709	9.2	ribonucleases P/MRP protein subunit POP1 [Homo sapiens]
U	gi\|225007650\|ref\|NP_0	7	10	9.1%	1024	114709	9.2	ribonucleases P/MRP protein subunit POP1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.19791.19791.2	2.739	0.0896	1401.854	1401.5923	60	423.9	50.0%	1	R.EMLGPVT#FIWK.S	2
step06.15004.15004.2	4.5417	0.432	1592.258	1592.9045	1	1101.7	78.6%	4	R.LIGPLSHSILTEAIK.A	2
step04.13062.13062.2	3.5615	0.3318	1221.868	1220.5292	1	1478.4	80.0%	1	K.IPILLIQQPGK.V	2
step02.15965.15965.2	3.075	0.2104	1428.561	1428.6595	1	1728.3	83.3%	1	R.LGWGSGWDVLLPK.G	2
step02.16433.16433.2	2.9729	0.4275	2594.829	2595.8347	1	349.2	40.0%	1	K.LGTLAPFCCPWEQLTQDWESR.V	2
step01.15330.15330.2	2.3427	0.1536	1212.607	1212.2861	7	355.1	59.3%	1	R.S#EVPCAPM*PK.K	2
step04.13586.13586.2	3.488	0.4987	1400.589	1400.6012	1	590.5	72.7%	1	R.EACLSILGHFPR.A	2

gi|7661952|ref|NP_055

963

109935

5.6

squamous cell carcinoma antigen recognized by T-cells 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.17626.17626.3	3.5226	0.3292	2282.622	2282.5398	1	1550.0	38.2%	1	K.GLALWEAYREFESAIVEAAR.L	3
*	step03.17643.17643.2	3.0031	0.2014	2283.674	2282.5398	1	525.1	39.5%	2	K.GLALWEAYREFESAIVEAAR.L	2
*	step02.11801.11801.2	2.3491	0.2094	1507.474	1507.6702	1	682.0	72.7%	1	R.ALEYLKQEVEER.F	2
*	step03.8351.8351.2	6.4032	0.5393	2365.839	2366.5735	1	2816.3	69.6%	2	R.RVENSIPAAGETQNVEVAAGPAGK.C	2
*	step03.8352.8352.3	4.211	0.4308	2366.707	2366.5735	1	1386.3	35.9%	2	R.RVENSIPAAGETQNVEVAAGPAGK.C	3
*	step06.10799.10799.3	5.5232	0.4537	2967.528	2967.2861	1	1441.5	34.7%	6	R.ALQRPSAAAPQAENGPAAAPAVAAPAATEAPK.M	3

U	gi\|117938251\|ref\|NP_0	6	10	9.1%	869	100232	10.0	bcl-2-associated transcription factor 1 isoform 2 [Homo sapiens]
U	gi\|7661958\|ref\|NP_055	6	10	8.6%	920	106122	10.0	bcl-2-associated transcription factor 1 isoform 1 [Homo sapiens]
U	gi\|117938254\|ref\|NP_0	6	10	10.6%	747	85937	10.4	bcl-2-associated transcription factor 1 isoform 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.11574.11574.3	5.0901	0.36	2610.469	2609.6538	1	1275.1	41.7%	2	K.SQEEPKDTFEHDPSESIDEFNK.S	3 3
step03.9681.9681.2	3.4151	0.3867	1813.933	1813.069	1	587.7	59.4%	2	K.MAPVPLDDSNRPASLTK.D	2 2 2
step03.8277.8277.2	3.0213	0.3079	1828.355	1829.0684	1	442.2	59.4%	2	K.M*APVPLDDSNRPASLTK.D	2 2 2
step04.12478.12478.2	3.557	0.3494	1169.406	1168.4111	1	1258.1	85.0%	2	R.LLASTLVHSVK.K	2 2 2
step06.13938.13938.2	3.1445	0.2691	1296.821	1296.5841	1	946.5	77.3%	1	R.LLASTLVHSVKK.E	2 2 2
step03.5380.5380.3	6.0785	0.6162	3426.298	3426.5405	1	1420.9	37.0%	1	K.WTHDKYQGDGIVEDEEETMENNEEKKDR.R	3

Similarities: gi|310133313|ref|XP_0(5:1)
gi|310112868|ref|XP_0(4:2)

gi|24307971|ref|NP_05

464

54003

6.8

serine/threonine-protein kinase 38-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.19014.19014.3	4.0595	0.1963	3492.769	3491.848	1	950.4	26.7%	3	K.DTLTEEETQFYISETVLAIDAIHQLGFIHR.D	3
	step01.7721.7721.2	3.4235	0.4144	1211.452	1211.3832	1	1690.4	90.0%	2	K.LSDFGLCTGLK.K	2 2
	step03.11025.11025.2	2.5414	0.2117	1339.819	1339.556	1	777.6	72.7%	1	K.LSDFGLCTGLKK.A	2 2

Similarities: gi|6005814|ref|NP_009(2:1)

gi|19557702|ref|NP_00

361

41450

10.6

surfeit locus protein 6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.10083.10083.3	3.7996	0.1677	2603.372	2603.7288	1	872.6	32.6%	1	R.KAEEATEAQEVVEATPEGACTEPR.E	3
*	step05.13165.13165.2	2.4248	0.2048	1213.735	1213.4739	1	664.8	75.0%	1	K.M*KWTNLLYK.A	2

U	gi\|4506003\|ref\|NP_002	3	4	9.1%	330	37512	6.3	serine/threonine-protein phosphatase PP1-alpha catalytic subunit isoform 1 [Homo sapiens]
U	gi\|56790945\|ref\|NP_00	3	4	8.8%	341	38631	6.6	serine/threonine-protein phosphatase PP1-alpha catalytic subunit isoform 3 [Homo sapiens]
U	gi\|46249376\|ref\|NP_99	3	4	9.2%	327	37187	6.2	serine/threonine-protein phosphatase PP1-beta catalytic subunit isoform 1 [Homo sapiens]
U	gi\|4506007\|ref\|NP_002	3	4	9.3%	323	36984	6.5	serine/threonine-protein phosphatase PP1-gamma catalytic subunit [Homo sapiens]
U	gi\|4506005\|ref\|NP_002	3	4	9.2%	327	37187	6.2	serine/threonine-protein phosphatase PP1-beta catalytic subunit isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.15731.15731.2	5.2677	0.5495	2197.356	2197.6025	1	1609.6	69.4%	1	K.SREIFLSQPILLELEAPLK.I	2
step05.15244.15244.3	4.3437	0.3889	1441.152	1440.7135	1	1412.7	62.5%	2	K.IKYPENFFLLR.G	3 3
step05.15218.15220.2	2.7986	0.3104	1441.73	1440.7135	1	702.4	80.0%	1	K.IKYPENFFLLR.G	2 2

Similarities: gi|45827798|ref|NP_99(2:1)

gi|7661806|ref|NP_054

296

33420

10.0

39S ribosomal protein L15, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.11126.11126.2	3.2159	0.3415	1325.244	1325.5392	1	1271.5	79.2%	2	R.VSLANLKPNPGSK.K	2
*	step06.15278.15278.2	3.9751	0.4697	1691.651	1692.0312	1	1071.0	80.8%	2	R.SLDIVCKPVPFFLR.G	2

gi|4506727|ref|NP_000

263

29456

10.2

40S ribosomal protein S4, Y isoform 1 Y isoform [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.12262.12262.2	2.9033	0.4044	1216.534	1216.3745	1	634.7	80.0%	2	K.GIPHLVTHDAR.T	2 2
step06.12370.12370.2	3.3034	0.2824	1507.702	1507.6783	9	296.2	62.5%	2	R.ERHPGSFDVVHVK.D	2 2
step05.11752.11752.3	3.5762	0.3644	1222.589	1222.3774	1	1561.4	62.5%	1	R.HPGSFDVVHVK.D	3 3

Similarities: gi|4506725|ref|NP_000(3:0)

U	gi\|301336155\|ref\|NP_0	4	9	9.0%	732	82393	7.0	tRNA (cytosine-5-)-methyltransferase NSUN2 isoform 2 [Homo sapiens]
U	gi\|39995082\|ref\|NP_06	4	9	8.6%	767	86471	6.8	tRNA (cytosine-5-)-methyltransferase NSUN2 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.14717.14717.2	4.0925	0.3116	1780.712	1781.0515	1	1301.2	78.6%	4	K.WTTLNSLQLHGLQLR.I	2
step03.17042.17042.3	3.5388	0.3023	2837.582	2838.2437	1	582.2	28.3%	1	K.LFGFKEDPFVFIPEDDPLFPPIEK.F	3
step03.16971.16971.2	3.7692	0.4202	2838.014	2838.2437	1	1080.0	47.8%	2	K.LFGFKEDPFVFIPEDDPLFPPIEK.F	2
step03.5837.5837.3	4.7605	0.429	2844.757	2846.0146	1	485.2	31.7%	2	K.KKEGVILTNESAASTGQPDNDVTEGQR.A	3

gi|21071032|ref|NP_05

9.0%

622

69838

6.8

probable ATP-dependent RNA helicase DDX41 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.16770.16770.2	2.8264	0.2913	2224.702	2225.6729	1	351.2	44.1%	1	K.TLVFTLPVIMFCLEQEKR.L	2
*	step05.11958.11958.2	2.5071	0.2367	1354.637	1354.6237	1	654.9	83.3%	1	K.SALVKPVTINVGR.A	2
*	step05.11984.11984.3	3.7529	0.3961	1354.874	1354.6237	1	799.2	50.0%	1	K.SALVKPVTINVGR.A	3
*	step03.15526.15526.3	6.9449	0.5233	3001.603	3001.3213	1	2233.2	44.8%	2	K.GLDFPAIQHVINYDMPEEIENYVHR.I	3

U	gi\|294832006\|ref\|NP_0	4	7	9.0%	457	53000	6.5	serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform 2 [Homo sapiens]
U	gi\|4506019\|ref\|NP_002	4	7	9.2%	447	51692	6.2	serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.8481.8481.2	2.2551	0.2397	1323.672	1323.4801	2	422.7	65.0%	2	R.YRDPTTVTTLR.V	2
step05.15085.15085.3	4.0244	0.3242	1845.532	1845.2224	1	1785.2	50.0%	2	R.VPVFRPMDLMVEASPR.R	3
step05.15072.15072.2	4.1729	0.3332	1845.848	1845.2224	1	643.2	56.7%	2	R.VPVFRPMDLMVEASPR.R	2
step02.17842.17842.2	2.6776	0.1276	1559.637	1559.742	1	1055.0	65.4%	1	R.SFFSEIISSISDVK.F	2

gi|4503659|ref|NP_001

9.0%

133

14390

10.2

ubiquitin-like protein fubi and ribosomal protein S30 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.14110.14110.2	3.3648	0.329	1264.13	1264.5006	1	790.4	80.0%	4	R.RFVNVVPTFGK.K	2
*	step05.12720.12720.2	2.8459	0.1219	1236.61	1236.4872	6	557.4	65.0%	1	R.FVNVVPTFGKK.K	2

gi|150378533|ref|NP_0

8.9%

1102

128302

5.6

ubiquitin carboxyl-terminal hydrolase 7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.16790.16790.2	4.5827	0.4742	2622.176	2621.9468	1	1235.7	54.8%	2	K.NQGATCYMNSLLQTLFFTNQLR.K	2
*	step02.16031.16031.2	3.2198	0.3322	2378.577	2379.6523	1	1051.7	50.0%	1	K.INDRFEFPEQLPLDEFLQK.T	2
*	step02.15946.15946.3	4.343	0.374	2379.843	2379.6523	1	1257.3	47.2%	2	K.INDRFEFPEQLPLDEFLQK.T	3
*	step02.17348.17348.3	5.799	0.5028	2584.052	2584.8467	1	2834.7	50.0%	2	K.NSSLAEFVQSLSQTMGFPQDQIR.L	3
*	step03.13346.13346.2	3.3602	0.2631	1508.684	1508.7665	1	1239.5	77.3%	2	K.FDKDHDVMLFLK.M	2
*	step05.15251.15251.2	2.9053	0.3593	1164.584	1164.3811	1	1083.0	87.5%	2	R.DLLQFFKPR.Q	2
*	step02.17055.17055.2	4.4131	0.5053	1497.664	1496.777	1	959.1	79.2%	4	K.EVFGTFGIPFLLR.I	2

gi|20127408|ref|NP_00

8.9%

763

83000

9.0

trifunctional enzyme subunit alpha, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13354.13354.3	4.4352	0.3966	2612.46	2612.0266	1	2157.1	41.7%	2	R.SAVLISSKPGCFIAGADINM*LAACK.T	3
*	step05.14809.14809.2	3.9225	0.3843	2136.022	2136.481	1	1320.3	59.5%	2	R.KTVLGTPEVLLGALPGAGGTQR.L	2
*	step05.15306.15306.2	7.4812	0.5821	2022.779	2022.4012	1	5445.7	85.0%	2	K.HLAILGAGLMGAGIAQVSVDK.G	2

U	gi\|35493811\|ref\|NP_90	3	6	8.9%	530	59380	10.1	RNA-binding protein 39 isoform a [Homo sapiens]
U	gi\|4757926\|ref\|NP_004	3	6	9.0%	524	58657	10.1	RNA-binding protein 39 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.14622.14622.2	4.251	0.4954	1693.727	1692.9377	1	1528.8	68.8%	2	K.CPSIAAAIAAVNALHGR.W	2
step06.15904.15904.3	4.0396	0.4371	3349.153	3349.9111	1	562.7	31.9%	2	K.MITAAYVPLPTYHNLFPDSMTATQLLVPSR.R	3
step06.15613.15614.3	4.4305	0.4315	3366.3	3365.9104	2	410.5	29.3%	2	K.MITAAYVPLPTYHNLFPDSM*TATQLLVPSR.R	3

gi|156415990|ref|NP_0

8.8%

364

38518

10.8

Y-box-binding protein 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.9468.9470.3	4.4454	0.3912	1746.397	1745.9144	1	1988.8	53.6%	1	R.NDTKEDVFVHQTAIK.R	3 3 3 3
step03.9455.9455.2	5.1334	0.403	1746.56	1745.9144	1	1193.0	75.0%	3	R.NDTKEDVFVHQTAIK.R	2 2 2 2
step01.7266.7266.2	4.8597	0.5331	1797.495	1796.8671	1	1378.8	71.9%	3	R.SVGDGETVEFDVVEGEK.G	2 2 2 2

Similarities: gi|34098946|ref|NP_00(3:0)
gi|224586882|ref|NP_0(3:0)
gi|224586884|ref|NP_0(3:0)

gi|68131557|ref|NP_05

1053

112966

6.3

serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.13783.13783.2	2.2831	0.2913	923.278	923.09625	3	306.8	75.0%	1	K.WLTPLHR.A	2
*	step05.12173.12173.2	4.1117	0.321	1707.477	1707.9143	1	1134.5	78.6%	2	R.DKNWQTPLHIAAANK.A	2
	step03.13892.13892.2	4.1291	0.4694	2018.754	2018.2565	1	2000.8	61.1%	2	R.YGHELLINTLITSGADTAK.R	2 2
	step04.14228.14228.2	6.807	0.5628	2174.725	2174.4429	1	3150.6	76.3%	2	R.YGHELLINTLITSGADTAKR.G	2 2
	step04.14218.14218.3	4.6525	0.4232	2175.04	2174.4429	1	1600.8	50.0%	2	R.YGHELLINTLITSGADTAKR.G	3 3
	step04.14547.14547.3	4.8313	0.4539	3414.273	3414.6707	1	1402.3	26.7%	1	R.SPLHYAAANCNYQCLFALVGSGASVNDLDER.G	3 3
	step05.14058.14058.2	4.3765	0.5212	1988.756	1989.268	1	891.3	58.3%	2	R.NLINATNAALQTPLHVAAR.N	2 2

Similarities: gi|304361757|ref|NP_0(5:2)

gi|32307144|ref|NP_00

727

83550

6.9

procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13521.13521.2	4.1232	0.3337	1923.992	1924.1895	1	888.8	64.7%	2	R.NLAYDTLPVLIHGNGPTK.L	2
*	step02.13238.13238.2	2.6555	0.2329	3054.438	3053.2322	3	313.6	20.7%	1	R.QQDVFMFLT#NRHT#LGHLLSLDSYR.T	2
*	step03.14730.14730.3	5.7286	0.3564	2627.773	2626.8203	1	1435.9	40.0%	1	R.TTHLHNDLWEVFSNPEDWKEK.Y	3

U	gi\|15812186\|ref\|NP_03	5	8	8.7%	471	54561	5.0	F-box only protein 3 isoform 1 [Homo sapiens]
U	gi\|15812188\|ref\|NP_20	5	8	9.9%	415	47530	6.6	F-box only protein 3 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.15536.15538.2	5.4408	0.4847	1829.426	1828.1716	1	1407.6	78.1%	1	K.LVVPGLLGSMALSNHYR.S	2
step06.14836.14836.2	3.2993	0.3054	1843.705	1844.171	1	606.4	65.6%	2	K.LVVPGLLGSM*ALSNHYR.S	2
step03.9432.9432.2	3.8928	0.4151	1900.392	1901.0867	1	1740.4	78.6%	2	R.NKNEVFYQCPDQMAR.N	2
step03.7936.7936.2	3.6369	0.371	1916.34	1917.086	1	935.0	67.9%	2	R.NKNEVFYQCPDQM*AR.N	2
step05.10105.10105.2	2.3582	0.2115	1183.52	1183.3582	12	505.5	68.8%	1	R.FHM*ACPTFR.V	2

gi|5031777|ref|NP_005

366

39592

6.9

isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.14350.14350.2	2.7668	0.2328	1591.585	1591.9033	1	704.5	64.3%	1	K.TPIAAGHPSMNLLLR.K	2
*	step02.17487.17487.2	2.5744	0.2218	1880.215	1880.2869	1	666.2	43.8%	1	K.DMANPTALLLSAVMMLR.H	2

gi|222352151|ref|NP_0

356

37498

7.1

poly(rC)-binding protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.16626.16626.3	6.1709	0.4879	3382.106	3380.8389	1	2213.1	38.3%	2	K.AFAMIIDKLEEDINSSMTNSTAASRPPVTLR.L	3
*	step04.16442.16442.3	3.8494	0.2243	3396.478	3396.8381	1	391.4	25.0%	1	K.AFAM*IIDKLEEDINSSMTNSTAASRPPVTLR.L	3

gi|8922256|ref|NP_060

8.6%

429

49108

5.0

intraflagellar transport protein 57 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13670.13670.2	2.5434	0.0897	1145.575	1146.2329	26	393.1	60.0%	1	R.GEGTGEVVLER.G	2
*	step02.16068.16068.3	3.9019	0.1746	2962.648	2962.177	1	730.2	28.0%	1	K.AGRPFEQPQEYDDPNATISNILSELR.S	3

gi|24497435|ref|NP_00

8.6%

406

45626

7.5

26S protease regulatory subunit 8 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14734.14734.3	5.8901	0.4128	2459.691	2458.8804	1	1274.4	35.7%	1	K.EVIELPVKHPELFEALGIAQPK.G	3
*	step04.15825.15825.2	2.4044	0.121	1650.602	1650.7946	109	180.8	30.6%	1	K.VMQKDSEKNMS#IK.K	2

gi|41327779|ref|NP_06

8.5%

600

68547

9.2

ATP-dependent RNA helicase DDX55 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.11882.11882.2	3.3998	0.424	1384.494	1384.6498	1	1447.4	75.0%	2	K.KSQVGAIIITPTR.E	2
*	step03.15755.15755.2	2.6021	0.3476	1744.498	1743.9816	1	351.9	57.1%	1	R.ELAIQIDEVLSHFTK.H	2
*	step06.15853.15853.2	4.2477	0.4684	1688.637	1687.9247	1	895.6	80.8%	2	K.HFPEFSQILWIGGR.N	2
*	step06.14585.14585.2	3.4003	0.3415	1174.48	1174.3792	1	1179.8	93.8%	2	K.FNQLVHFLR.N	2

gi|4506585|ref|NP_002

8.5%

270

29247

6.1

replication protein A 32 kDa subunit [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18054.18054.2	4.9727	0.466	2598.998	2598.973	1	2347.1	63.6%	2	R.AQHIVPCTISQLLSATLVDEVFR.I	2
*	step05.18058.18058.3	4.4367	0.3557	2599.668	2598.973	1	1553.9	37.5%	2	R.AQHIVPCTISQLLSATLVDEVFR.I	3

gi|110347427|ref|NP_0

8.4%

3546

404234

5.8

ubiquitin carboxyl-terminal hydrolase 34 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17828.17828.3	4.8849	0.4298	3015.948	3015.4539	1	1057.2	34.0%	2	K.ELADWLISNNVVEHIFGPNLHIEIIK.Q	3
*	step03.13186.13186.2	2.978	0.4647	1856.456	1856.1086	1	670.5	60.0%	2	R.LSTQHIDCIWAAAQLK.H	2
*	step04.14470.14470.2	3.0373	0.4186	1347.538	1346.5984	1	667.4	80.0%	1	R.YIHDLFPSLIK.N	2
*	step02.16761.16761.3	5.7789	0.3548	3116.461	3115.3943	1	1469.7	28.7%	2	K.KGNTLLWDIVQDEDAVNLSEGLINEAEK.L	3
*	step05.12972.12972.2	3.0202	0.3435	1345.381	1345.5956	1	680.8	66.7%	2	R.KGEFPGGLMGPVR.M	2
*	step03.18390.18390.3	3.7108	0.1938	2345.268	2345.7222	1	1245.1	44.0%	2	K.FVAAGGLQQLLEIFNSGILEPK.E	3
*	step03.16289.16289.3	4.2657	0.4009	3433.978	3434.7517	1	769.2	31.0%	1	K.LICQFAVDPSDLDLAYHDVFAWSGIAESHR.K	3
*	step04.13416.13416.2	2.8457	0.4301	1354.751	1354.6636	1	935.3	72.7%	1	K.KLTLLIPETAVR.H	2
*	step02.17350.17350.2	4.2165	0.3802	1277.54	1277.5775	1	1803.6	86.4%	2	R.SFLLLAASTLLK.F	2
*	step04.12329.12329.2	2.5018	0.4284	1368.954	1369.6367	1	378.6	68.2%	1	K.FLPDAQALKPIR.I	2
*	step06.17194.17194.2	4.0624	0.2347	1804.956	1805.153	2	1002.2	64.3%	3	R.DIFNLLFLLPSLKDR.Q	2
*	step05.13595.13595.2	2.9061	0.3264	1218.504	1218.3888	1	836.5	88.9%	2	K.VNTHFSFPLR.L	2
*	step04.14897.14897.2	4.3182	0.5268	1610.772	1609.8473	1	997.9	69.2%	1	K.LSTSFVLETFIHSK.E	2
*	step04.16506.16506.2	4.0703	0.3198	1731.708	1731.0927	1	498.5	80.8%	2	K.EKPTMLQWIELLTK.Q	2
*	step05.11618.11618.2	2.699	0.3287	1039.478	1039.2501	1	1014.6	92.9%	2	R.LCIHVIQR.L	2
*	step04.15083.15083.2	5.7422	0.5324	2012.787	2013.2683	1	2443.6	83.3%	2	K.LAHSWVLQNMENWVER.F	2
*	step05.12457.12457.2	2.7456	0.2653	1131.751	1131.3112	1	1023.0	93.8%	2	R.FLLAHNYPR.V	2
*	step05.14460.14460.2	3.2888	0.314	1263.75	1263.5541	1	1242.1	86.4%	4	R.ALALLLSVHTPK.Q	2
*	step05.15019.15019.2	5.6395	0.5377	2071.86	2072.3276	1	1896.9	75.0%	2	R.GLFSHMQQHDILDTLCR.T	2
*	step05.15026.15026.3	5.0826	0.5797	2072.374	2072.3276	1	2253.9	51.6%	2	R.GLFSHMQQHDILDTLCR.T	3
*	step05.14528.14528.2	3.9136	0.4414	2087.864	2088.327	1	1160.0	71.9%	1	R.GLFSHM*QQHDILDTLCR.T	2

U	gi\|112363070\|ref\|NP_0	2	2	8.4%	359	39303	5.2	hsp70-binding protein 1 [Homo sapiens]
U	gi\|194294548\|ref\|NP_0	2	2	8.4%	359	39303	5.2	hsp70-binding protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.15716.15716.2	3.9124	0.5104	1803.793	1804.0851	1	876.4	63.3%	1	K.SAFLLQNLLVGHPEHK.G	2
	step02.15051.15051.2	2.6433	0.2941	1742.718	1743.9335	51	156.8	46.2%	1	R.ECREPELGLEELLR.H	2

gi|18490987|ref|NP_05

8.4%

239

27560

8.3

mRNA turnover protein 4 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.7098.7098.2	2.5568	0.3116	909.18	909.1531	1	928.9	92.9%	1	K.VMMVALGR.S	2
*	step05.13862.13864.2	3.5203	0.4219	1375.614	1375.6014	1	1066.1	81.8%	1	R.LRGEVGLLFTNR.T	2

gi|157694511|ref|NP_0

8.3%

749

84905

5.6

nucleolar complex protein 2 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.11285.11285.2	2.2092	0.1605	1430.611	1430.6987	1	532.6	66.7%	1	K.KNSVPVTVAMVER.W	2
*	step02.17654.17654.3	5.705	0.5243	2840.39	2839.356	1	1779.3	35.6%	1	R.VLSTAGPSEALQPLVYPLAQVIIGCIK.L	3
*	step05.14028.14028.2	2.3982	0.2302	1463.977	1464.7982	1	431.3	66.7%	1	R.MSSKPINFSVILK.L	2
*	step06.13010.13010.2	2.4305	0.3232	1013.156	1013.21924	1	577.4	75.0%	1	R.GILRPLSTR.H	2

U	gi\|21361745\|ref\|NP_06	5	7	8.3%	672	73653	8.7	spermatid perinuclear RNA-binding protein isoform 1 [Homo sapiens]
U	gi\|283806705\|ref\|NP_0	5	7	8.5%	658	71967	8.7	spermatid perinuclear RNA-binding protein isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.13931.13931.2	3.6002	0.4097	2409.815	2409.7644	1	590.9	42.5%	1	K.DKPTETLLNTVKDNLPIQIQK.L	2
2	step03.9332.9332.2	2.4229	0.3599	847.187	847.0315	3	758.3	91.7%	2	K.SCVIVLR.I	2 2 2
	step05.10307.10307.2	3.575	0.2943	1330.525	1330.5607	1	1085.7	80.0%	1	R.LNQIRPGLQYK.L	2
	step04.12201.12201.2	4.898	0.4516	1890.53	1891.0748	1	1959.2	78.1%	2	R.GLKYELISETGGSHDKR.F	2 2 2
	step04.12167.12167.3	3.5458	0.3071	1891.824	1891.0748	1	1063.7	48.4%	1	R.GLKYELISETGGSHDKR.F	3 3 3

Similarities: gi|212549555|ref|NP_0(3:2)
gi|212549553|ref|NP_0(3:2)

gi|56676330|ref|NP_05

8.3%

553

61207

9.7

heterochromatin protein 1-binding protein 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14337.14337.2	4.9947	0.5854	1559.91	1559.8778	1	1676.5	85.7%	2	K.ALPLIVGAQLIHADK.L	2
*	step06.15350.15350.2	4.0006	0.4715	1986.267	1987.375	1	613.2	61.1%	1	K.ALPLIVGAQLIHADKLGEK.V	2
*	step03.18612.18612.2	4.7175	0.5727	2792.604	2792.2646	1	750.4	36.5%	1	K.SGEKPLLGGSLMEYAILSAIAAMNEPK.T	2

U	gi\|68303572\|ref\|NP_00	2	3	8.3%	337	38915	9.6	casein kinase I isoform alpha isoform 2 [Homo sapiens]
U	gi\|68303575\|ref\|NP_00	2	3	7.7%	365	41937	9.6	casein kinase I isoform alpha isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.13584.13584.2	3.7664	0.359	1261.414	1260.5135	1	674.2	77.3%	2	K.ILQGGVGIPHIR.W	2
	step03.14118.14118.2	3.301	0.2676	2078.345	2077.3044	1	323.6	46.7%	1	R.TLNHQYDYTFDWTMLK.Q	2

gi|32307161|ref|NP_00

776

89678

8.0

cullin-1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.17831.17831.2	3.9887	0.5216	2310.726	2311.5947	1	1210.5	50.0%	1	K.NYLTNLLKDGEDLMDESVLK.F	2
*	step05.12526.12526.2	3.1961	0.4874	1787.991	1788.0408	1	745.2	56.7%	1	K.LLETHIHNQGLAAIEK.C	2
*	step02.19649.19649.2	3.3317	0.3548	1514.793	1514.8987	1	1764.1	79.2%	1	K.M*DILAQVLQILLK.S	2
*	step04.14660.14660.2	4.2223	0.4309	1709.674	1709.9285	1	1361.1	75.0%	2	K.HQQLLGEVLTQLSSR.F	2

gi|163792194|ref|NP_1

733

81747

7.9

TRM1-like protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.16365.16365.2	4.4924	0.3911	2549.888	2549.7776	1	776.4	57.1%	2	R.SFDFIHLDPFGTSVNYLDSAFR.N	2
*	step01.9158.9158.2	2.3452	0.2209	1255.409	1255.299	13	339.9	58.3%	1	R.RHY#GCNIVR.T	2
*	step04.15143.15143.3	5.0964	0.4458	2111.283	2111.4502	1	1286.4	52.9%	2	R.MLFESLHHGLDDIQTLIK.T	3
*	step04.14790.14790.2	3.911	0.3182	2126.834	2127.4495	1	610.4	64.7%	1	R.M*LFESLHHGLDDIQTLIK.T	2
*	step02.13805.13805.2	3.0271	0.4329	1362.456	1362.5514	1	1175.3	80.0%	1	K.FLCYLSQAGFR.V	2

U	gi\|31542947\|ref\|NP_00	3	6	8.2%	573	61055	5.9	60 kDa heat shock protein, mitochondrial [Homo sapiens]
U	gi\|41399285\|ref\|NP_95	3	6	8.2%	573	61055	5.9	60 kDa heat shock protein, mitochondrial [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.18611.18611.2	4.756	0.5765	2115.143	2114.5588	1	1043.0	50.0%	2	R.ALMLQGVDLLADAVAVTMGPK.G	2
step04.14103.14103.2	4.8986	0.4317	1920.718	1920.2024	1	864.2	67.6%	2	K.ISSIQSIVPALEIANAHR.K	2
step04.11888.11888.2	3.0237	0.1073	942.444	942.18097	1	1057.5	92.9%	2	K.IGIEIIKR.T	2

gi|39812229|ref|NP_00

539

60666

5.1

importin subunit alpha-6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step04.8004.8004.2	2.3688	0.143	1359.323	1358.526	13	214.5	50.0%	1	R.EEEGIQLRKQK.R	2 2 2
	step05.13998.13998.2	2.4138	0.2387	1531.078	1531.8048	1	526.8	63.6%	2	R.RLVELLMHNDYK.V	2 2 2
	step03.18827.18827.3	5.997	0.4607	2337.53	2337.7864	1	2807.5	47.5%	4	R.AQIQAVIDANIFPVLIEILQK.A	3 3
	step03.18858.18858.2	6.1794	0.5798	2338.002	2337.7864	1	1341.3	62.5%	4	R.AQIQAVIDANIFPVLIEILQK.A	2 2

Similarities: gi|6912478|ref|NP_036(4:0)
gi|222144293|ref|NP_0(2:2)

gi|4503475|ref|NP_001

463

50470

9.0

elongation factor 1-alpha 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.13096.13096.2	4.2804	0.4515	1590.274	1589.8208	1	2094.8	82.1%	2	K.THINIVVIGHVDSGK.S	2 2
step04.13056.13056.2	2.6738	0.4183	1316.503	1315.5427	2	303.3	59.1%	3	R.EHALLAYTLGVK.Q	2 2
step02.9695.9695.2	2.2108	0.4253	1025.928	1026.2148	1	360.0	75.0%	1	K.IGGIGTVPVGR.V	2 2

Similarities: gi|4503471|ref|NP_001(3:0)

U	gi\|122056617\|ref\|NP_0	2	2	8.2%	330	35637	9.7	LIM domain-binding protein 3 isoform 3 [Homo sapiens]
U	gi\|45592959\|ref\|NP_00	2	2	3.7%	727	77135	8.1	LIM domain-binding protein 3 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step02.9719.9719.2	2.3452	0.1378	2903.444	2904.3167	125	85.5	17.9%	1	R.EM*AQMYQMSLRGKASGVGLPGGS#LPIK.D	2
2	step02.9719.9719.2	2.3452	0.1378	2903.444	2904.3167	125	85.5	17.9%	1	R.EMAQM*YQMSLRGKASGVGLPGGS#LPIK.D	2

gi|40018640|ref|NP_07

8.1%

531

60577

9.6

parafibromin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.11299.11299.2	2.6319	0.0968	1875.537	1875.0767	23	151.4	38.1%	1	-.M*ADVLS#VLRQYNIQK.K	2
*	step02.15906.15906.2	3.1201	0.3821	1133.403	1133.3652	1	941.9	83.3%	2	K.NIFAILQSVK.A	2
*	step04.6800.6800.2	3.0607	0.1646	1901.44	1901.1161	1	272.6	50.0%	1	R.APEQRPAPNAAPVDPTLR.T	2

gi|21735592|ref|NP_00

8.1%

344

38592

5.4

programmed cell death protein 2 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.20243.20243.2	2.3215	0.1367	1461.327	1461.6511	8	295.5	50.0%	1	R.LRSEQFPSKVGGR.P	2
*	step02.17012.17012.2	4.4816	0.4072	1849.655	1850.2571	1	1165.2	75.0%	2	R.ILEFQVMPQLLNYLK.A	2

gi|39777586|ref|NP_94

8.0%

1386

155604

7.7

putative ATP-dependent RNA helicase DHX57 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17134.17134.3	6.6997	0.6113	2860.55	2861.0781	1	1870.1	39.6%	2	R.MCDGDVGASLEHLLTQCFSETFGER.M	3
*	step03.14009.14009.2	3.0881	0.2895	2474.206	2474.7153	2	333.1	35.7%	2	R.RLEGDTALQGVSHIIVDEVHER.T	2
*	step05.15518.15518.2	4.1809	0.4899	1879.511	1880.1603	1	1390.1	70.0%	1	K.ILEMFSAHNLQSVFSR.L	2
*	step04.13790.13790.2	2.5385	0.3365	1896.46	1896.1597	1	144.6	53.3%	1	K.ILEM*FSAHNLQSVFSR.L	2
*	step05.14657.14657.2	3.3564	0.3627	1751.673	1752.05	1	1423.4	76.7%	2	R.LTPLGYHLASLPVDVR.I	2
*	step04.15423.15423.2	6.4346	0.5376	2207.867	2206.525	1	3418.9	75.0%	1	K.KLEFAFANSDYLALLQAYK.G	2
*	step04.9993.9993.2	2.6495	0.2538	1574.616	1574.7914	1	408.8	54.2%	1	K.IKNPSIDLCTCPR.G	2

gi|4508005|ref|NP_003

8.0%

539

62166

5.0

tripartite motif-containing protein 26 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.15988.15988.3	3.8608	0.3313	2167.674	2167.4536	1	1228.2	42.6%	2	K.ENIRPVWQLASLVENIER.L	3
*	step03.15987.15987.2	4.5243	0.51	2168.065	2167.4536	1	339.0	55.9%	4	K.ENIRPVWQLASLVENIER.L	2
*	step05.11818.11818.2	2.8335	0.2392	1067.108	1067.267	1	1006.8	87.5%	2	K.ILNHLSTLR.R	2
*	step04.13360.13360.2	3.2385	0.3744	1812.923	1813.0504	52	246.4	40.0%	2	R.KGDLSLRPEDGVWALR.L	2

gi|40556376|ref|NP_11

8.0%

553

60547

9.2

putative oxidoreductase GLYR1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.18016.18016.2	3.9688	0.3602	1890.23	1890.3228	1	1180.5	63.9%	2	K.IGFLGLGLMGSGIVSNLLK.M	2
*	step05.13166.13166.3	4.2308	0.3844	2610.773	2610.9736	1	908.1	34.4%	1	R.LAIALGDAVNHPTPM*AAAANEVYKR.A	3

gi|29826282|ref|NP_81

7.9%

546

59272

4.4

protein phosphatase 1G [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14628.14628.2	3.827	0.4269	1624.557	1623.9023	1	919.9	80.8%	2	R.LPLPYGFSAMQGWR.V	2
*	step02.17193.17193.3	5.6982	0.5801	3273.789	3273.4824	1	2252.6	37.5%	1	K.VADEDDVDNEEAALLHEEATMTIEELLTR.Y	3
*	step02.17039.17039.3	5.5045	0.5326	3288.725	3289.482	1	2056.3	39.3%	2	K.VADEDDVDNEEAALLHEEATM*TIEELLTR.Y	3

gi|34740329|ref|NP_91

7.9%

378

39595

9.0

heterogeneous nuclear ribonucleoprotein A3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.5328.5328.2	2.8378	0.4367	1235.552	1235.3899	1	751.5	88.9%	1	K.IETIEVMEDR.Q	2
*	step01.4706.4706.2	3.4343	0.3015	1860.422	1859.974	30	219.9	42.9%	1	K.IETIEVM*EDRQS#GKK.R	2
*	step02.13845.13845.2	4.3017	0.5358	1715.587	1714.8125	1	1413.3	75.0%	2	R.GFAFVTFDDHDTVDK.I	2

U	gi\|27477136\|ref\|NP_06	5	7	7.8%	902	101431	8.4	zinc finger CCCH-type antiviral protein 1 isoform 1 [Homo sapiens]
U	gi\|27477138\|ref\|NP_07	5	7	10.0%	699	77903	8.4	zinc finger CCCH-type antiviral protein 1 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.18051.18051.3	4.4974	0.2956	3082.447	3081.5242	1	1152.5	31.5%	2	R.MALDALLQEIALSEPQLCEVLQVAGPDR.F	3
step02.17514.17514.3	4.7551	0.2317	3098.462	3097.5237	1	1588.7	35.2%	1	R.M*ALDALLQEIALSEPQLCEVLQVAGPDR.F	3
step05.11810.11810.2	2.4292	0.3616	1199.528	1199.3374	1	773.2	81.2%	1	R.LHICDHFTR.G	2
step03.8436.8436.2	2.6065	0.153	1825.838	1824.656	22	183.2	31.4%	1	R.EIS#S#PRIQDAGPAS#R.D	2
step04.11034.11034.2	3.5291	0.4875	1865.798	1866.1051	1	729.4	55.9%	2	R.LSTPSSVTKPANSVFTTK.W	2

U	gi\|304361757\|ref\|NP_0	5	9	7.8%	899	96161	6.1	serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform b [Homo sapiens]
U	gi\|304361760\|ref\|NP_0	5	9	7.8%	899	96161	6.1	serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.13892.13892.2	4.1291	0.4694	2018.754	2018.2565	1	2000.8	61.1%	2	R.YGHELLINTLITSGADTAK.R	2 2
step04.14228.14228.2	6.807	0.5628	2174.725	2174.4429	1	3150.6	76.3%	2	R.YGHELLINTLITSGADTAKR.G	2 2
step04.14218.14218.3	4.6525	0.4232	2175.04	2174.4429	1	1600.8	50.0%	2	R.YGHELLINTLITSGADTAKR.G	3 3
step04.14547.14547.3	4.8313	0.4539	3414.273	3414.6707	1	1402.3	26.7%	1	R.SPLHYAAANCNYQCLFALVGSGASVNDLDER.G	3 3
step05.14058.14058.2	4.3765	0.5212	1988.756	1989.268	1	891.3	58.3%	2	R.NLINATNAALQTPLHVAAR.N	2 2

Similarities: gi|68131557|ref|NP_05(5:0)

U	gi\|21361437\|ref\|NP_05	4	5	7.8%	755	85853	4.4	HIV Tat-specific factor 1 [Homo sapiens]
U	gi\|253970456\|ref\|NP_0	4	5	7.8%	755	85853	4.4	HIV Tat-specific factor 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.15464.15464.3	3.8881	0.3321	2847.873	2847.176	1	721.8	33.0%	2	K.NMFHPMDFEDDPLVLNEIREDLR.V	3
step03.14918.14918.3	3.5907	0.1249	2863.366	2863.1753	1	660.8	31.8%	1	K.NMFHPM*DFEDDPLVLNEIREDLR.V	3
step06.14930.14930.2	2.3912	0.2845	1929.673	1930.199	25	221.1	40.6%	1	K.LLLFDRHPDGVASVSFR.D	2
step01.7185.7185.2	3.741	0.5025	2113.098	2113.312	1	1953.0	66.7%	1	K.MNAQETATGMAFEEPIDEK.K	2

gi|58331171|ref|NP_00

7.8%

486

53289

7.3

T-complex protein 1 subunit zeta isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.19310.19310.2	7.6967	0.5616	2208.309	2207.5527	1	2449.9	65.0%	3	K.VHAELADVLTEAVVDSILAIK.K	2 2
step04.19308.19308.3	4.5158	0.3053	2208.705	2207.5527	1	1042.6	38.8%	4	K.VHAELADVLTEAVVDSILAIK.K	3 3
step02.17157.17157.2	3.9455	0.4197	1768.645	1769.1206	1	1461.0	71.9%	2	R.AQLGVQAFADALLIIPK.V	2 2

Similarities: gi|4502643|ref|NP_001(3:0)

U	gi\|157649073\|ref\|NP_0	2	2	7.8%	475	51673	8.0	adenylyl cyclase-associated protein 1 [Homo sapiens]
U	gi\|5453595\|ref\|NP_006	2	2	7.8%	475	51673	8.0	adenylyl cyclase-associated protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.8996.8997.2	3.3472	0.1386	1543.826	1543.6012	1	834.8	60.6%	1	K.EMNDAAMFY#TNR.V	2
	step03.16716.16716.2	2.3429	0.1459	2696.188	2694.8152	22	209.2	21.9%	1	K.AQSGPVRSGPKPFS#APKPQT#SPSPK.R	2

gi|33188463|ref|NP_87

7.8%

396

45835

9.5

28S ribosomal protein S9, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15170.15170.3	3.7105	0.3567	2285.953	2286.532	1	854.9	40.3%	1	R.AIQWGEDGRPFHYLFYTGK.Q	3
*	step05.15166.15166.2	4.6234	0.4678	2287.742	2286.532	1	604.3	50.0%	2	R.AIQWGEDGRPFHYLFYTGK.Q	2
*	step03.14478.14478.2	3.5262	0.3946	1567.612	1566.8077	1	434.2	77.3%	3	R.EQLMFPFHFVDR.L	2

U	gi\|21361368\|ref\|NP_00	4	10	7.7%	795	87302	7.1	delta-1-pyrroline-5-carboxylate synthase isoform 1 [Homo sapiens]
U	gi\|62912457\|ref\|NP_00	4	10	7.7%	793	87089	7.1	delta-1-pyrroline-5-carboxylate synthase isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step01.5356.5356.2	2.4551	0.1252	1858.439	1857.8124	9	372.6	33.8%	3	R.S#WSNIPFIT#VPLS#R.T	2
step05.15922.15922.3	5.9906	0.4563	2771.626	2771.165	1	2266.1	41.3%	2	R.AEIIHHLADLLTDQRDEILLANKK.D	3
step02.17735.17736.2	4.4767	0.5955	1462.802	1462.7393	1	1703.9	81.8%	3	R.TPLFDQIIDMLR.V	2
step04.11578.11578.2	3.5343	0.3938	1381.424	1380.5765	1	1199.9	80.0%	2	K.YLHENLPIPQR.N	2

U	gi\|33286418\|ref\|NP_00	3	5	7.7%	531	57937	7.8	pyruvate kinase isozymes M1/M2 isoform M2 [Homo sapiens]
U	gi\|33286422\|ref\|NP_87	3	5	7.7%	531	58062	7.7	pyruvate kinase isozymes M1/M2 isoform M1 [Homo sapiens]
U	gi\|33286420\|ref\|NP_87	3	5	7.7%	531	58062	7.7	pyruvate kinase isozymes M1/M2 isoform M1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.13602.13602.3	6.1702	0.5131	2478.826	2478.827	1	2222.0	45.7%	1	K.KGVNLPGAAVDLPAVSEKDIQDLK.F	3
step05.15715.15715.2	3.6405	0.468	1877.426	1878.284	1	1606.8	71.9%	2	R.AGKPVICATQMLESMIK.K	2
step05.15728.15728.3	4.509	0.459	1878.312	1878.284	1	1437.2	50.0%	2	R.AGKPVICATQMLESMIK.K	3

U	gi\|14523054\|ref\|NP_11	2	10	7.7%	418	49219	8.1	zinc finger protein 566 isoform 1 [Homo sapiens]
U	gi\|223890215\|ref\|NP_0	2	6	7.7%	418	49219	8.1	zinc finger protein 566 isoform 1 [Homo sapiens]
U	gi\|223890212\|ref\|NP_0	2	10	7.7%	418	49219	8.1	zinc finger protein 566 isoform 1 [Homo sapiens]
U	gi\|223890210\|ref\|NP_0	2	10	7.6%	419	49290	8.1	zinc finger protein 566 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.13577.13577.2	3.1577	0.1975	1864.54	1863.9425	1	504.5	46.2%	8	R.HQRIHTGEKPY#ECK.E	2
	step06.12270.12270.2	2.6604	0.2709	2329.392	2330.5298	1	841.1	47.1%	2	K.HQRIHTGEKPYECKECEK.A	2

U	gi\|301171467\|ref\|NP_0	3	4	7.6%	661	73156	7.2	ATP-dependent RNA helicase DDX3X isoform 2 [Homo sapiens]
U	gi\|87196351\|ref\|NP_00	3	4	7.6%	662	73244	7.2	ATP-dependent RNA helicase DDX3X isoform 1 [Homo sapiens]
U	gi\|301171475\|ref\|NP_0	3	4	7.7%	646	71355	6.6	ATP-dependent RNA helicase DDX3X isoform 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.17595.17595.2	3.4618	0.5269	2332.808	2333.6682	1	1829.7	61.9%	2	K.TAAFLLPILSQIYSDGPGEALR.A	2
step04.11709.11709.2	3.8594	0.3667	1888.789	1889.1418	1	542.9	53.1%	1	R.VRPCVVYGGADIGQQIR.D	2 2
step05.10694.10694.2	2.4239	0.4325	1181.372	1181.3635	1	844.0	65.0%	1	R.GCHLLVATPGR.L	2 2

Similarities: gi|13514809|ref|NP_00(2:1)

gi|9945320|ref|NP_064

7.6%

526

59634

10.7

cyclin-L1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17385.17385.3	3.903	0.3212	1641.27	1640.9858	1	2719.6	62.5%	2	R.ILGCELIQAAGILLR.L	3
*	step02.17379.17379.2	5.1953	0.4573	1641.746	1640.9858	1	2744.0	82.1%	3	R.ILGCELIQAAGILLR.L	2
*	step06.14596.14596.2	4.4504	0.5699	1668.684	1668.9878	1	1589.1	82.1%	2	R.LPQVAMATGQVLFHR.F	2
*	step06.13956.13956.2	4.6868	0.4398	1684.868	1684.9872	1	943.4	78.6%	2	R.LPQVAM*ATGQVLFHR.F	2
*	step06.14142.14142.2	2.7983	0.2391	1250.451	1250.4341	1	1039.2	83.3%	2	R.DVINVFHHLR.Q	2

U	gi\|118442828\|ref\|NP_0	2	3	7.6%	527	59346	6.8	tubulin-specific chaperone E [Homo sapiens]
U	gi\|4507375\|ref\|NP_003	2	3	7.6%	527	59346	6.8	tubulin-specific chaperone E [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.17502.17502.2	3.4362	0.4309	2011.241	2010.2393	1	501.3	59.4%	1	K.NLLSSWDEVIHIADQLR.H	2
	step04.18524.18524.2	2.3599	0.1999	2638.138	2637.0486	45	104.1	21.2%	2	K.GLLS#RLLKVPVSDLLLSYESPKK.P	2

gi|197333811|ref|NP_0

7.5%

1524

170543

7.3

unhealthy ribosome biogenesis protein 2 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15874.15874.2	3.5517	0.4949	1543.937	1543.7937	1	1398.9	81.8%	2	R.LWIYIDNILHSR.K	2
*	step05.15332.15332.2	4.1689	0.333	1910.824	1911.2306	1	1505.3	65.6%	2	R.AFGDVTAHLLQPCLVLR.H	2
*	step05.15352.15352.3	3.8247	0.2774	1911.692	1911.2306	1	1561.3	50.0%	1	R.AFGDVTAHLLQPCLVLR.H	3
*	step03.14700.14702.2	2.8438	0.1471	2043.893	2044.3768	2	405.3	44.1%	1	R.LFEEVLGVICRPAAEALR.Q	2
*	step03.19538.19538.3	3.7419	0.2614	3418.972	3418.9229	8	325.9	21.1%	1	K.LGQEAPAALSELLQQVVLQTGAVLQLCSVPGAR.G	3 2
*	step04.16907.16907.3	5.1847	0.3428	2396.912	2396.7192	1	1583.0	45.2%	1	R.LPSVLISSVSTLLEADLGQHCR.D	3
*	step05.14239.14239.2	3.2291	0.3407	1541.454	1541.7565	1	877.3	75.0%	1	K.KDSVFTSMFHSVR.R	2

U	gi\|14165464\|ref\|NP_11	2	5	7.5%	550	59037	9.2	polypyrimidine tract-binding protein 1 isoform b [Homo sapiens]
U	gi\|4506243\|ref\|NP_002	2	5	7.4%	557	59633	9.2	polypyrimidine tract-binding protein 1 isoform a [Homo sapiens]
U	gi\|14165466\|ref\|NP_11	2	5	7.7%	531	57221	9.2	polypyrimidine tract-binding protein 1 isoform c [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.15033.15033.2	6.0907	0.6697	2114.067	2113.4824	1	2547.3	73.7%	3	R.KLPIDVTEGEVISLGLPFGK.V	2
	step06.17881.17881.2	4.314	0.4549	2490.905	2489.936	1	475.3	47.5%	2	R.IIVENLFYPVTLDVLHQIFSK.F	2

U	gi\|240849353\|ref\|NP_0	2	3	7.4%	555	64292	6.7	serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform e [Homo sapiens]
U	gi\|31083259\|ref\|NP_00	2	3	7.8%	524	61061	6.9	serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform a [Homo sapiens]
U	gi\|31083243\|ref\|NP_84	2	3	9.1%	449	52625	7.2	serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform c [Homo sapiens]
U	gi\|31083236\|ref\|NP_84	2	3	8.5%	485	56661	7.2	serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform b [Homo sapiens]
U	gi\|240849359\|ref\|NP_0	2	3	7.6%	540	62755	8.7	serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform f [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.16141.16141.2	4.1155	0.4755	2281.969	2282.6165	1	955.6	61.1%	2	K.SLSVYHPQLAYCVVQFLEK.D	2
	step02.19538.19538.2	2.648	0.2784	2639.506	2639.9988	5	163.0	28.6%	1	K.EVM*FLNELEEILDVIEPSEFVK.I	2

U	gi\|224028244\|ref\|NP_0	3	5	7.4%	471	54232	8.9	non-POU domain-containing octamer-binding protein isoform 1 [Homo sapiens]
U	gi\|34932414\|ref\|NP_03	3	5	7.4%	471	54232	8.9	non-POU domain-containing octamer-binding protein isoform 1 [Homo sapiens]
U	gi\|224028248\|ref\|NP_0	3	5	9.2%	382	43866	8.6	non-POU domain-containing octamer-binding protein isoform 2 [Homo sapiens]
U	gi\|224028246\|ref\|NP_0	3	5	7.4%	471	54232	8.9	non-POU domain-containing octamer-binding protein isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.18502.18502.3	4.6907	0.497	2669.589	2669.9265	1	1442.0	36.4%	2	R.NLPQYVSNELLEEAFSVFGQVER.A	3
step03.18490.18490.2	4.8088	0.604	2669.65	2669.9265	1	2149.3	54.5%	2	R.NLPQYVSNELLEEAFSVFGQVER.A	2
step04.10016.10016.2	2.8522	0.2664	1232.326	1232.4138	2	701.7	63.6%	1	K.GIVEFSGKPAAR.K	2

gi|55749531|ref|NP_00

7.3%

895

100228

5.7

splicing factor 3B subunit 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.5313.5313.2	2.3624	0.1855	2069.188	2070.1555	10	236.5	31.6%	1	R.SSLGQSASETEEDTVSVSKK.E	2
*	step05.12096.12096.2	3.1242	0.334	1321.487	1321.574	1	759.5	83.3%	2	R.ISLGMPVGPNAHK.V	2
*	step06.12200.12202.2	2.4034	0.1479	1338.176	1337.5734	1	437.3	58.3%	1	R.ISLGM*PVGPNAHK.V	2
*	step05.14832.14832.2	2.7188	0.4131	1308.626	1308.62	1	576.2	90.0%	3	K.VPPPWLIAMQR.Y	2
*	step02.11895.11895.3	4.7345	0.4693	2391.038	2391.5571	1	2293.1	41.2%	2	R.EQQAQVEKEDFSDMVAEHAAK.Q	3

gi|7661920|ref|NP_055

7.3%

411

46871

6.7

eukaryotic initiation factor 4A-III [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.12188.12188.2	5.179	0.522	1828.616	1829.0483	1	1503.7	83.3%	3	R.GIYAYGFEKPSAIQQR.A	2 2 2
*	step03.8357.8357.2	3.779	0.4149	1471.491	1470.6149	1	854.8	69.2%	2	K.LDYGQHVVAGTPGR.V	2

Similarities: gi|4503529|ref|NP_001(1:1)
gi|83700235|ref|NP_00(1:1)

U	gi\|31563378\|ref\|NP_85	2	5	7.3%	245	26599	4.7	eukaryotic translation initiation factor 6 isoform a [Homo sapiens]
U	gi\|4504771\|ref\|NP_002	2	5	7.3%	245	26599	4.7	eukaryotic translation initiation factor 6 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.12893.12893.2	3.8144	0.474	2085.947	2086.2974	1	1170.3	79.4%	2	R.HGLLVPNNTTDQELQHIR.N	2
	step04.12425.12425.3	4.4369	0.4897	2086.532	2086.2974	1	1706.1	47.1%	3	R.HGLLVPNNTTDQELQHIR.N	3

gi|194394141|ref|NP_0

7.2%

2271

254386

6.5

nucleolar pre-ribosomal-associated protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13515.13515.2	4.7703	0.4551	1656.384	1655.7947	1	1674.1	82.1%	2	K.HGINFYDASLGTFGR.G	2
*	step05.940.940.2	3.4793	0.432	1681.465	1682.043	1	987.6	71.4%	3	R.SVGPPLLQLFLDLLR.R	2
*	step03.8049.8049.2	3.6241	0.3722	1838.586	1838.9966	1	1211.3	75.0%	2	R.LVVHCEQLDAQNQQR.C	2
*	step03.14471.14471.2	2.8935	0.1623	2318.884	2319.6829	13	162.0	27.5%	1	R.EVTLALLSLPETHLVTQQPTK.S	2
*	step04.20012.20012.3	4.2374	0.4104	2560.291	2559.9863	1	661.8	37.0%	1	R.GLGALLPTLAVDELDTVLLHTLQR.D	3
*	step02.17960.17960.2	5.7359	0.5569	2687.029	2688.0713	1	1210.0	50.0%	2	R.LLSTDSPPASGLYQEILAQLVPFAR.A	2
*	step04.1185.1185.3	4.297	0.3973	3275.26	3274.7676	1	749.9	30.0%	1	R.LCGAEGLAGPVQEVACLFNTVMLQLVAAQGR.A	3
*	step05.14544.14544.2	3.9805	0.4323	1991.586	1992.2703	1	543.1	53.1%	2	K.DIWLGAQRPDTLLTHVR.M	2
*	step05.14540.14540.3	3.5749	0.3685	1992.52	1992.2703	1	958.1	48.4%	1	K.DIWLGAQRPDTLLTHVR.M	3

gi|63055057|ref|NP_00

7.2%

376

42003

5.6

beta-actin-like protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.9354.9354.2	2.4427	0.2771	1172.291	1172.4069	1	663.4	70.0%	1	R.HQGVMVGMGQK.D	2 2 2 2
	step01.8051.8051.2	4.7689	0.504	1792.318	1791.94	1	1550.1	80.0%	2	R.SYELPDGQVITIGNER.F	2 2 2 2 2

Similarities: gi|4501885|ref|NP_001(2:0)
gi|4501881|ref|NP_001(2:0)
gi|213688375|ref|NP_0(2:0)
gi|134133226|ref|NP_0(1:1)

gi|194097365|ref|NP_0

847

96558

8.4

putative rRNA methyltransferase 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.15719.15719.3	3.9232	0.3813	3420.768	3421.8308	1	376.4	24.2%	1	K.VDVVLNDGAPNVGASWVHDAYSQAHLTLMALR.L	3
*	step02.20249.20249.2	4.6579	0.5249	1867.882	1868.1692	1	2119.7	80.8%	2	R.DYQPLLWIFQQLFR.R	2
*	step02.11423.11423.2	3.1722	0.2937	1595.616	1595.6945	1	1222.0	69.2%	2	K.AEGYAEGDLTLYHR.T	2

gi|38044290|ref|NP_06

707

78577

4.9

zinc finger CCHC domain-containing protein 8 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.6196.6196.2	4.5141	0.3098	1575.708	1575.7428	1	1886.8	86.4%	3	R.LRQCEETIEQLR.A	2
*	step05.14180.14180.2	5.4673	0.5861	2241.873	2242.5188	1	2949.2	83.3%	1	K.YHQVFSHIVSLEGQEIQVK.A	2
*	step03.14381.14381.2	4.048	0.4555	2046.795	2047.2946	1	1649.9	75.0%	2	R.FKPGVISEELQDALGVTDK.S	2

gi|30795212|ref|NP_00

579

63705

8.9

insulin-like growth factor 2 mRNA-binding protein 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step03.2518.2518.2	2.6908	0.268	1457.017	1456.7975	1	480.7	57.7%	1	R.LLVPTQFVGAIIGK.E	2
*	step03.6245.6245.2	2.601	0.3058	1191.611	1191.3585	1	792.6	83.3%	1	K.IKEENFVSPK.E	2
*	step03.5782.5782.2	4.5066	0.4253	1677.683	1676.892	1	1228.2	76.9%	2	K.IKEENFVSPKEEVK.L	2
*	step04.10047.10047.2	3.8243	0.4116	1551.823	1551.7246	1	1483.1	79.2%	1	K.ITGHFYACQVAQR.K	2

gi|48476344|ref|NP_05

308

32796

9.3

regulating synaptic membrane exocytosis protein 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step05.13978.13978.2	2.3885	0.1234	2562.955	2562.2815	14	184.8	20.0%	1	R.ES#TDGSTNSNSSDGTFIFPT#T#R.L	2
*2	step05.13978.13978.2	2.3885	0.1234	2562.955	2562.2815	14	184.8	20.0%	1	R.EST#DGSTNSNSSDGTFIFPT#T#R.L	2

U	gi\|4504205\|ref\|NP_001	3	3	7.0%	911	100680	7.3	general transcription factor 3C polypeptide 2 [Homo sapiens]
U	gi\|78482617\|ref\|NP_00	3	3	7.0%	911	100680	7.3	general transcription factor 3C polypeptide 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.18614.18614.3	4.3359	0.1627	3267.816	3267.7085	3	478.0	26.7%	1	R.AAQVALLYLQELAEELSTALPAPVSCPEGPK.V	3
step03.14441.14441.2	2.9489	0.407	2153.54	2154.4067	1	494.7	44.1%	1	K.WHLLSELEAAPYLPQEEK.S	2
step05.15269.15269.2	3.0713	0.4076	1865.127	1866.1052	1	583.3	64.3%	1	K.LYPFQCFLAHDQAVR.T	2

gi|18860916|ref|NP_03

6.9%

950

108583

7.5

5'-3' exoribonuclease 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.13896.13896.2	2.5749	0.3309	988.073	988.2114	1	702.3	85.7%	2	R.LFSIVRPR.R	2
*	step05.13968.13968.2	2.5484	0.331	1474.927	1475.7843	1	754.8	75.0%	1	R.RLLYMAIDGVAPR.A	2
*	step01.10678.10678.2	2.2142	0.0939	2127.155	2126.1462	1	409.4	29.2%	1	R.DQPAFTPSGILT#PHALGS#R.N	2
*	step03.6242.6242.2	4.7436	0.5456	1555.522	1555.6735	1	1404.5	83.3%	2	K.NKFDVDAADEKFR.R	2
*	step06.12269.12269.2	4.2489	0.5171	1469.658	1469.71	1	843.3	75.0%	2	R.KPAAVLKPSDWEK.S	2

U	gi\|82659083\|ref\|NP_00	2	3	6.9%	496	54934	9.5	double-stranded RNA-binding protein Staufen homolog 1 isoform a [Homo sapiens]
U	gi\|82659091\|ref\|NP_00	2	3	6.8%	502	55635	9.5	double-stranded RNA-binding protein Staufen homolog 1 isoform c [Homo sapiens]
U	gi\|82659089\|ref\|NP_05	2	3	6.9%	496	54934	9.5	double-stranded RNA-binding protein Staufen homolog 1 isoform a [Homo sapiens]
U	gi\|82659087\|ref\|NP_05	2	3	5.9%	577	63182	9.4	double-stranded RNA-binding protein Staufen homolog 1 isoform b [Homo sapiens]
U	gi\|82659085\|ref\|NP_05	2	3	6.9%	496	54934	9.5	double-stranded RNA-binding protein Staufen homolog 1 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.13403.13403.2	3.0576	0.4119	1299.678	1299.5416	1	998.6	77.3%	2	K.NAAIAVLEELKK.L	2
	step06.12402.12402.2	3.4134	0.4246	2413.029	2411.7422	1	323.9	50.0%	1	K.TKPIVKPQTSPEYGQGINPISR.L	2

gi|38016935|ref|NP_07

6.9%

418

47522

9.1

centromere protein U [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11459.11459.2	2.4939	0.1065	1830.595	1831.1339	2	667.7	57.7%	1	K.KRQRM*IEVQDELLR.L	2
*	step02.1581.1581.2	3.0174	0.1235	1793.621	1792.9539	56	278.1	31.0%	1	R.KSSLRNAAYFLS#NLK.Q	2

gi|4826988|ref|NP_005

6.9%

407

46296

10.4

60S ribosomal protein L3-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step04.12929.12929.2	2.4183	0.4974	1789.643	1788.981	1	462.6	73.3%	1	R.DDPSQPVHLTAFLGYK.A	2 2
	step06.13028.13028.2	3.7277	0.3206	1366.796	1366.5896	1	1651.4	86.4%	2	R.KVACIGAWHPAR.V	2 2
	step05.11540.11540.1	2.1778	0.153	1237.863	1238.4167	1	393.2	65.0%	1	K.VACIGAWHPAR.V	1 1
	step05.11512.11512.2	3.3771	0.3749	1238.362	1238.4167	2	1291.8	85.0%	2	K.VACIGAWHPAR.V	2 2

Similarities: gi|4506649|ref|NP_000(4:0)

U	gi\|55956919\|ref\|NP_11	2	5	6.9%	332	35968	6.9	heterogeneous nuclear ribonucleoprotein A/B isoform a [Homo sapiens]
U	gi\|55956921\|ref\|NP_00	2	5	8.1%	285	30588	7.9	heterogeneous nuclear ribonucleoprotein A/B isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.15128.15128.2	3.0755	0.2117	929.392	929.13916	1	622.1	85.7%	3	R.GFGFILFK.D	2
	step04.13814.13814.2	4.2845	0.4657	1798.861	1799.102	1	1023.2	64.3%	2	R.GFVFITFKEEEPVKK.V	2

U	gi\|167466175\|ref\|NP_0	2	3	6.8%	824	91867	7.0	cell division cycle protein 27 homolog isoform 2 [Homo sapiens]
U	gi\|167466177\|ref\|NP_0	2	3	6.7%	830	92612	7.1	cell division cycle protein 27 homolog isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.17054.17054.3	3.6233	0.3031	3382.877	3383.7412	1	533.7	29.5%	1	K.SLSLNPFLWSPFESLCEIGEKPDPDQTFK.F	3
	step06.14123.14123.3	5.4859	0.4998	3148.621	3148.3794	1	831.7	30.8%	2	K.FTSLQNFSNCLPNSCTTQVPNHSLSHR.Q	3

gi|4504009|ref|NP_000

6.8%

429

48767

5.6

alpha-galactosidase A precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14581.14581.2	2.9844	0.4414	1414.53	1414.6165	1	1046.9	75.0%	2	R.TPTMGWLHWER.F	2
*	step06.15830.15830.2	4.0527	0.4023	2044.838	2045.4015	1	1237.8	55.9%	2	K.GVACNPACFITQLLPVKR.K	2

U	gi\|194018511\|ref\|NP_7	2	2	6.7%	578	61901	6.0	keratin, type II cytoskeletal 1b [Homo sapiens]
U	gi\|45597458\|ref\|NP_77	2	2	6.7%	578	61801	6.0	keratin 1B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.6176.6176.2	3.525	0.3065	1476.448	1476.6593	1	1829.1	90.9%	1	R.FLEQQNQVLQTK.W	2 2 2
	step02.13378.13378.3	3.8228	0.1316	3294.476	3295.4993	203	443.8	19.9%	1	R.QVDLLS#AEQMRQNAEVRSMQDVVEDYK.S	3

Similarities: gi|119395750|ref|NP_0(1:1)
gi|4557703|ref|NP_000(1:1)

gi|84626578|ref|NP_07

6.7%

326

35876

5.9

target of rapamycin complex subunit LST8 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step03.17417.17417.2	2.2805	0.0805	2503.718	2503.5168	9	248.9	21.4%	1	R.T#SNFSLMT#ELSIKSGNPGESSR.G	2
*2	step03.17417.17417.2	2.2805	0.0805	2503.718	2503.5168	9	248.9	21.4%	1	R.TS#NFSLMT#ELSIKSGNPGESSR.G	2

gi|269847874|ref|NP_0

1430

160248

8.4

probable ATP-dependent RNA helicase YTHDC2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.10425.10425.2	2.2695	0.2826	1159.543	1160.3907	1	624.9	75.0%	1	K.APEPPPALIVR.N	2
*	step03.17253.17253.3	5.6307	0.5092	3282.098	3281.6375	1	1072.6	32.1%	2	K.TIDAMDTWEDLTELGYHLADLPVEPHLGK.M	3
*	step05.18031.18031.3	4.563	0.4565	3093.346	3093.5498	1	1150.1	36.5%	1	K.CLDPILTIACTLAYRDPFVLPTQASQK.R	3
*	step04.13512.13512.2	3.4116	0.4469	1537.758	1537.7678	1	1357.0	76.9%	2	R.FTAGAFSDHMALLR.A	2
*	step05.11950.11950.2	2.4851	0.3519	1502.319	1502.6985	1	573.2	70.8%	2	R.FHPASVLSQPQYK.K	2

gi|4507943|ref|NP_003

1071

123386

6.1

exportin-1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16424.16424.3	5.2657	0.5004	2543.01	2542.783	1	1350.2	42.9%	2	K.LDINLLDNVVNCLYHGEGAQQR.M	3
*	step02.12111.12111.2	3.4866	0.3807	2141.89	2142.4194	1	1344.2	55.6%	2	R.MAKPEEVLVVENDQGEVVR.E	2
*	step02.17200.17200.2	4.8319	0.5702	2148.884	2149.4983	1	1387.5	76.5%	1	K.YMLLPNQVWDSIIQQATK.N	2
*	step02.16486.16486.2	3.4756	0.4095	2166.034	2165.4978	1	380.9	47.1%	1	K.YM*LLPNQVWDSIIQQATK.N	2
*	step06.14308.14308.2	3.0594	0.438	1295.613	1294.53	1	572.1	77.3%	1	K.AVGHPFVIQLGR.I	2

gi|167234419|ref|NP_0

955

108666

10.2

thyroid hormone receptor-associated protein 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.9814.9814.2	2.6509	0.288	2056.279	2056.1355	1	351.4	39.5%	1	K.ASESSKPWPDATYGTGSASR.A	2
*	step02.11198.11198.2	2.7716	0.1337	1732.265	1731.6943	80	266.8	30.8%	1	K.MKS#DSFAPKTDS#EK.P	2
*	step03.5812.5812.2	2.7764	0.2407	1948.885	1949.0692	1	273.7	42.2%	1	K.FM*S#KVIGANKNQEEEK.S	2
*	step04.11826.11826.2	3.5455	0.4111	1529.864	1530.6703	1	1491.8	75.0%	3	R.SIFQHIQSAQSQR.S	2

U	gi\|255918192\|ref\|NP_0	4	5	6.6%	879	98485	4.6	serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 4 [Homo sapiens]
U	gi\|255918198\|ref\|NP_0	4	5	6.9%	844	94445	4.6	serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 2 [Homo sapiens]
U	gi\|255918196\|ref\|NP_0	4	5	6.7%	867	96957	4.6	serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 1 [Homo sapiens]
U	gi\|255918194\|ref\|NP_0	4	5	6.6%	873	97669	4.6	serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.14815.14815.2	3.0144	0.0932	1004.435	1004.29065	10	605.6	85.7%	1	R.KLIEFLLK.A	2 2
2	step04.14327.14327.2	3.923	0.4804	1456.912	1456.7362	1	1170.9	87.5%	1	K.HIGTSAIM*DLLLR.L	2 2 2
	step05.13922.13922.2	3.618	0.3962	1608.696	1608.9056	1	706.5	69.2%	1	R.LGSFHELLLEPPKK.S	2
	step06.13979.13979.3	5.6174	0.4655	2506.975	2507.865	1	1939.9	39.8%	2	R.IANCIVHSTDKGPNSALVQQLIK.D	3 3

Similarities: gi|13489083|ref|NP_06(3:1)
gi|37537701|ref|NP_05(1:3)

gi|7706657|ref|NP_056

579

65521

7.1

pre-mRNA-processing factor 17 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13769.13769.2	3.3714	0.2692	2010.51	2010.1946	1	1066.7	55.9%	1	K.FKENDASNIDGFLGPWAK.Y	2
*	step04.12274.12274.2	2.5343	0.3241	2131.556	2131.4617	14	232.9	31.6%	1	K.YIAEPSMHSMPAVTLSPNGK.W	2

gi|296317280|ref|NP_0

439

49978

5.5

E3 ubiquitin-protein ligase UBR2 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.11998.11998.2	3.4106	0.348	1483.959	1484.6832	1	780.6	81.8%	4	R.EVYQHLAHYVPK.I	2 2
step02.17164.17164.2	4.608	0.4259	1751.757	1751.0189	1	852.4	56.7%	1	K.LLSWLGSIIGYSDGLR.R	2 2
step06.16304.16304.2	2.6434	0.2919	1906.989	1907.2053	3	287.4	40.6%	1	K.LLSWLGSIIGYSDGLRR.I	2 2

Similarities: gi|27597061|ref|NP_05(3:0)

U	gi\|42716280\|ref\|NP_97	4	4	6.5%	1268	141439	6.9	vigilin [Homo sapiens]
U	gi\|4885409\|ref\|NP_005	4	4	6.5%	1268	141439	6.9	vigilin [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.14268.14268.2	2.6535	0.2041	1391.847	1390.5731	1	795.7	72.7%	1	K.AFHPFIAGPYNR.L	2
step02.18282.18282.3	3.7214	0.2529	2941.829	2942.2888	2	454.9	29.0%	1	R.EAQKELEALIQNLDNVVEDSMLVDPK.H	3
step02.10024.10024.3	4.3598	0.2588	2970.027	2970.028	1	580.2	26.9%	1	K.FPDREENAVHSTEPVVQENGDEAGEGR.E	3
step02.14812.14812.2	2.2538	0.2565	2066.735	2067.3093	27	231.4	32.4%	1	R.IVGELEQMVSEDVPLDHR.V	2

gi|28875797|ref|NP_05

6.5%

248

26397

12.2

Friend of PRMT1 protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.9269.9269.2	2.7705	0.2037	1784.516	1785.062	11	221.2	43.3%	1	R.LAQQMENRPSVQAALK.L	2
*	step04.8037.8037.2	3.0488	0.2605	1800.627	1801.0614	1	304.1	56.7%	3	R.LAQQM*ENRPSVQAALK.L	2

gi|5453555|ref|NP_006

6.5%

216

24423

7.5

GTP-binding nuclear protein Ran [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15648.15648.3	4.3523	0.3282	1786.576	1786.0251	1	1262.6	53.8%	2	K.SNYNFEKPFLWLAR.K	3
*	step05.15628.15628.2	4.8201	0.4637	1786.716	1786.0251	1	1442.2	76.9%	2	K.SNYNFEKPFLWLAR.K	2

gi|199559785|ref|NP_1

6.4%

481

55599

7.3

tRNA pseudouridine synthase 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.14877.14877.2	2.6071	0.1726	1824.017	1823.9027	1	655.6	46.2%	1	K.LFEALT#KT#RLVESR.Q	2
*	step03.13934.13934.2	2.3881	0.1274	2080.013	2080.391	1	1087.5	59.4%	1	R.TYKPLMDRPKCQGLESR.I	2

gi|24430151|ref|NP_00

6.4%

440

49185

6.2

26S protease regulatory subunit 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.17816.17816.2	2.6025	0.1094	1421.438	1422.4038	1	982.2	57.1%	2	-.MGQS#QSGGHGPGGGK.K	2
*	step03.13427.13427.2	2.6914	0.3271	1716.593	1715.9916	1	532.7	66.7%	2	R.IKDYLLM*EEEFIR.N	3 3 2

gi|21327667|ref|NP_05

6.3%

746

83630

6.2

ribosome biogenesis protein BOP1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.13735.13735.2	2.6655	0.2282	861.437	861.0664	1	620.7	100.0%	2	R.KLSFLPR.K	2
*	step05.15823.15823.2	4.0996	0.4146	1753.737	1754.0214	1	1597.2	76.9%	2	K.LVWFDLDLSTKPYR.M	2
*	step03.16695.16695.2	3.6915	0.5154	2814.078	2815.1318	1	631.2	42.0%	2	R.DLGVLDVIFHPTQPWVFSSGADGTVR.L	2
*	step03.16694.16694.3	7.6128	0.5814	2815.483	2815.1318	1	3408.4	45.0%	2	R.DLGVLDVIFHPTQPWVFSSGADGTVR.L	3

U	gi\|117553627\|ref\|NP_0	2	2	6.3%	621	68857	6.1	N-acetylserotonin O-methyltransferase-like protein isoform 1 [Homo sapiens]
U	gi\|291045183\|ref\|NP_0	2	2	6.4%	605	67193	6.1	N-acetylserotonin O-methyltransferase-like protein isoform 3 [Homo sapiens]
U	gi\|291045181\|ref\|NP_0	2	2	6.9%	563	62443	5.6	N-acetylserotonin O-methyltransferase-like protein isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.11805.11805.2	2.3133	0.0929	2014.106	2013.9885	135	141.9	31.1%	1	K.AEDLFQDAYYQS#PETR.L	2
	step03.12704.12704.2	2.7688	0.0956	2530.037	2528.8777	2	185.8	34.1%	1	R.VAESCKPGAGLLLVETLLDEEKR.V	2

U	gi\|33469922\|ref\|NP_87	4	7	6.3%	543	60643	6.3	DNA replication licensing factor MCM7 isoform 2 [Homo sapiens]
U	gi\|33469968\|ref\|NP_00	4	7	4.7%	719	81308	6.5	DNA replication licensing factor MCM7 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.7791.7791.2	4.5908	0.3594	1707.553	1707.893	1	1249.2	78.6%	2	K.MQEHSDQVPVGNIPR.S	2
step03.7206.7206.2	3.2546	0.4187	1723.531	1723.8923	1	894.6	67.9%	1	K.M*QEHSDQVPVGNIPR.S	2
step06.15802.15802.2	4.7937	0.56	2033.149	2034.3903	1	1423.0	69.4%	2	R.IAQPGDHVSVTGIFLPILR.T	2
step06.15803.15803.3	4.769	0.4231	2035.15	2034.3903	1	1252.5	47.2%	2	R.IAQPGDHVSVTGIFLPILR.T	3

gi|63176661|ref|NP_87

6.2%

614

69548

7.3

zinc finger and SCAN domain-containing protein 2 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.12832.12832.2	2.4884	0.103	2246.921	2247.3535	7	244.0	33.3%	1	K.S#FSRSPNLIAHQRTHTGEK.P	2
*	step06.13548.13548.2	3.7755	0.4088	2371.488	2372.5732	1	594.5	44.4%	2	R.HQRIHTGEKPYKCTDCGQR.F	2

gi|40217790|ref|NP_11

6.2%

567

64682

9.8

zinc finger protein 512 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.12372.12374.2	2.2061	0.2163	2148.576	2147.323	118	121.3	30.6%	1	R.SEHGPISFFPESGQPECLK.E	2
*	step06.14112.14112.3	3.5703	0.2702	1875.058	1874.1322	1	802.6	43.3%	1	K.YTRPGLPTFSQEVLHK.W	3

gi|6005757|ref|NP_009

6.1%

1047

119914

5.7

FACT complex subunit SPT16 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17579.17579.3	6.1523	0.4943	3140.038	3139.5225	1	4341.0	49.0%	1	R.TLM*VDPSQEVQENYNFLLQLQEELLK.E	3
*	step06.16370.16370.2	5.3967	0.6024	2349.935	2349.819	1	649.4	52.5%	3	K.YETVIMPVFGIATPFHIATIK.N	2
*	step05.15956.15956.2	3.1931	0.4244	2364.81	2365.8184	1	654.1	47.5%	1	K.YETVIM*PVFGIATPFHIATIK.N	2
*	step02.13640.13640.2	3.6464	0.4387	1826.999	1827.0339	1	703.1	75.0%	2	K.APGEQTVPALNLQNAFR.I	2

gi|4504327|ref|NP_000

6.1%

474

51294

9.4

trifunctional enzyme subunit beta, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12355.12355.2	2.7923	0.352	951.694	952.1359	1	884.9	87.5%	2	R.AALTGLLHR.T	2
*	step06.14713.14713.2	5.8041	0.5919	2136.451	2136.3083	1	1614.6	65.8%	1	K.FNNWGGSLSLGHPFGATGCR.L	2

U	gi\|218083720\|ref\|NP_0	2	2	6.1%	440	50589	9.8	coiled-coil domain-containing protein 121 isoform 2 [Homo sapiens]
U	gi\|39979626\|ref\|NP_07	2	2	9.7%	278	33061	9.8	coiled-coil domain-containing protein 121 isoform 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.10067.10067.2	2.9377	0.09	2605.896	2604.6235	3	251.0	21.0%	1	R.QES#AS#RY#AEQISVLKTALLQK.E	2
	step03.7694.7694.1	1.9385	0.123	793.494	794.81647	5	319.5	66.7%	1	K.S#RINPK.-	1

gi|91208426|ref|NP_00

6.0%

2335

273599

8.8

pre-mRNA-processing-splicing factor 8 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18231.18231.2	4.1483	0.3347	2534.612	2534.8442	1	856.6	47.5%	1	R.LANQLLTDLVDDNYFYLFDLK.A	2
*	step06.17506.17506.3	4.1439	0.1844	3116.053	3115.5107	5	655.6	25.0%	2	R.LGNVDAFQLADGLQYIFAHVGQLTGM*YR.Y	3
*	step04.14205.14205.2	3.5241	0.4703	1354.604	1354.5391	1	1406.0	85.0%	2	R.TILQHLSEAWR.C	2
*	step03.14571.14571.2	2.5407	0.2785	1551.521	1550.8911	7	363.3	65.4%	1	K.VPGLPTPIENMILR.Y	2
*	step02.13061.13061.2	2.333	0.2262	1605.42	1604.8525	1	527.1	53.8%	1	R.LIVDHNIADYMTAK.N	2
*	step04.18630.18632.2	5.2613	0.5661	2173.011	2173.5183	1	1412.1	60.5%	1	R.TDMIQALGGVEGILEHTLFK.G	2
*	step03.18747.18747.3	3.9569	0.4232	2174.824	2173.5183	1	812.2	40.8%	2	R.TDMIQALGGVEGILEHTLFK.G	3
*	step03.16474.16474.3	3.7181	0.4795	2189.925	2189.5176	2	897.0	38.2%	2	R.TDM*IQALGGVEGILEHTLFK.G	3
*	step04.12276.12276.2	2.5083	0.2019	1473.262	1473.6587	2	474.1	66.7%	1	K.WNVSRPSLLADSK.D	2
*	step03.16390.16390.2	4.987	0.5558	2165.032	2164.5962	1	1259.7	63.9%	1	K.GMLDPLEVHLLDFPNIVIK.G	2

gi|185135971|ref|NP_0

6.0%

614

68392

8.9

polyadenylate-binding protein 1-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11726.11726.3	3.6855	0.2237	2852.119	2852.8164	1	525.2	20.0%	1	R.Y#QGVNLY#VKNLDDS#IDDDKLRK.E	3
	step01.8640.8640.2	4.4441	0.5087	1663.471	1663.8021	1	1603.2	75.0%	1	K.GFGFVCFSSPEEATK.A	2 2 2 2

Similarities: gi|46367787|ref|NP_00(1:1)
gi|208431833|ref|NP_0(1:1)
gi|45238849|ref|NP_11(1:1)

U	gi\|212549736\|ref\|NP_0	2	4	6.0%	599	66856	5.6	anaphase-promoting complex subunit 7 isoform a [Homo sapiens]
U	gi\|212549738\|ref\|NP_0	2	4	6.7%	537	60002	8.4	anaphase-promoting complex subunit 7 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.14636.14636.3	7.7446	0.5047	2711.024	2709.946	1	2399.5	44.3%	2	R.LFNISDQHAEPWVVSGCHSFYSK.R	3
	step03.8453.8453.2	3.2222	0.3864	1498.26	1498.6201	1	808.6	75.0%	2	R.NALANQSDCVLHR.I	2

U	gi\|116295251\|ref\|NP_0	2	2	6.0%	516	57381	8.1	fascin-2 isoform 2 [Homo sapiens]
U	gi\|6912626\|ref\|NP_036	2	2	6.3%	492	55057	7.8	fascin-2 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.19946.19946.2	2.3583	0.1269	2271.217	2271.2366	140	134.3	21.1%	1	R.Y#LT#AES#FGFKVNASAPSLK.R	2
	step01.16163.16163.2	2.2752	0.2185	1712.979	1712.4792	2	469.3	41.8%	1	K.S#CDSRY#LRS#DGR.L	2

gi|158534055|ref|NP_9

5.9%

846

94870

8.8

round spermatid basic protein 1-like protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13779.13779.3	3.5486	0.3271	2815.56	2814.2542	1	763.8	31.2%	1	R.KDSDDGPIMWVRPGEQMIPVADMPK.S	3
*	step03.7319.7319.2	2.6217	0.2931	1453.937	1452.5499	1	492.5	63.6%	1	K.AVHCGEWPDQPR.I	2
*	step03.6093.6093.2	4.2635	0.3403	1510.724	1509.7292	1	1864.8	87.5%	2	R.IKEEPVNVNIPEK.T	2

U	gi\|187960109\|ref\|NP_0	4	7	5.9%	759	85738	9.2	RNA-binding protein 28 isoform 1 [Homo sapiens]
U	gi\|260898763\|ref\|NP_0	4	7	7.3%	618	69923	8.5	RNA-binding protein 28 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.17566.17566.3	6.3643	0.4641	2556.742	2555.7324	1	1956.3	44.0%	2	R.NLSFDSEEEELGELLQQFGELK.Y	3
step02.17589.17589.2	6.6681	0.5337	2556.81	2555.7324	1	1701.8	59.5%	1	R.NLSFDSEEEELGELLQQFGELK.Y	2
step03.10270.10270.2	2.7587	0.3341	1220.504	1220.4031	1	949.1	77.8%	2	K.LKDQNIFVSR.T	2
step02.12999.12999.2	2.9382	0.3984	1470.844	1469.71	1	1074.6	75.0%	2	R.LINNNPEIFGPLK.R	2

gi|15529978|ref|NP_21

5.9%

477

54272

6.2

zinc finger protein 622 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.12045.12045.2	2.7964	0.2949	1442.117	1441.572	1	456.4	68.2%	1	K.FASFNAYENHLK.S	2
*	step02.15867.15867.2	3.6733	0.4677	1939.84	1940.141	1	1385.0	80.0%	2	K.DHSFFIPDIEYLSDIK.G	2

gi|310133313|ref|XP_0

876

101033

9.9

PREDICTED: bcl-2-associated transcription factor 1-like isoform 2, partial [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.11574.11574.3	5.0901	0.36	2610.469	2609.6538	1	1275.1	41.7%	2	K.SQEEPKDTFEHDPSESIDEFNK.S	3 3
step03.9681.9681.2	3.4151	0.3867	1813.933	1813.069	1	587.7	59.4%	2	K.MAPVPLDDSNRPASLTK.D	2 2 2
step03.8277.8277.2	3.0213	0.3079	1828.355	1829.0684	1	442.2	59.4%	2	K.M*APVPLDDSNRPASLTK.D	2 2 2
step04.12478.12478.2	3.557	0.3494	1169.406	1168.4111	1	1258.1	85.0%	2	R.LLASTLVHSVK.K	2 2 2
step06.13938.13938.2	3.1445	0.2691	1296.821	1296.5841	1	946.5	77.3%	1	R.LLASTLVHSVKK.E	2 2 2

Similarities: gi|117938251|ref|NP_0(5:0)
gi|310112868|ref|XP_0(4:1)

gi|4507241|ref|NP_003

709

81075

6.9

FACT complex subunit SSRP1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.14419.14419.2	2.5044	0.1222	867.903	868.1005	7	452.2	83.3%	1	R.LFLLPHK.D	2
*	step05.11900.11900.2	4.2841	0.5402	2326.596	2326.5378	1	773.6	60.0%	4	K.ITVPGNFQGHSGAQCITCSYK.A	2
*	step02.11517.11517.2	3.2009	0.352	1370.494	1370.4904	1	805.3	70.8%	1	K.SDHPGISITDLSK.K	2

gi|82546879|ref|NP_00

669

72454

8.3

GTP-binding protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17625.17625.2	4.2816	0.4475	2210.805	2211.5862	1	509.8	47.5%	2	K.LNDTLLLGPDPLGNFLSIAVK.S	2
*	step04.9323.9323.2	3.4696	0.4066	2044.401	2043.3342	1	344.4	44.1%	2	K.LLQTTNNSPMNSKPQQIK.M	2
*	step02.19112.19112.2	2.5043	0.1037	2122.204	2123.3142	2	354.2	29.4%	1	K.LLQT#TNNSPMNSKPQQIK.M	2

gi|32129212|ref|NP_06

485

54929

8.7

zinc finger protein 434 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.12499.12499.2	2.5716	0.1704	2189.13	2190.3958	2	769.4	47.1%	1	R.HQRIHTGEKPHKCSECGK.G	2
*	step03.5993.5993.2	2.2981	0.104	1216.339	1217.3593	1	414.6	72.2%	1	R.KTHTGEKPYR.C	2

U	gi\|33636738\|ref\|NP_89	2	3	5.8%	398	46236	8.7	cAMP-dependent protein kinase catalytic subunit beta isoform 1 [Homo sapiens]
U	gi\|46909584\|ref\|NP_99	2	3	6.7%	343	39822	8.7	cAMP-dependent protein kinase catalytic subunit alpha isoform 2 [Homo sapiens]
U	gi\|4506057\|ref\|NP_002	2	3	6.6%	351	40623	8.8	cAMP-dependent protein kinase catalytic subunit beta isoform 2 [Homo sapiens]
U	gi\|4506055\|ref\|NP_002	2	3	6.6%	351	40590	8.8	cAMP-dependent protein kinase catalytic subunit alpha isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.14947.14947.2	4.668	0.4493	1663.765	1662.8702	1	1602.5	76.9%	2	R.FPSHFSSDLKDLLR.N	2
	step04.10889.10889.2	2.3452	0.1327	1029.986	1029.2571	1	941.9	81.2%	1	R.KVEAPFIPK.F	2

gi|63478060|ref|NP_11

312

35329

9.0

PHD finger protein 6 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.11277.11277.2	6.2114	0.586	2080.44	2080.3665	1	2271.0	73.5%	2	K.LMCSLCHCPGATIGCDVK.T	2 2
	step04.11332.11332.3	3.901	0.2056	2080.724	2080.3665	1	1104.0	44.1%	1	K.LMCSLCHCPGATIGCDVK.T	3 3

Similarities: gi|28557677|ref|NP_11(2:0)

gi|19923142|ref|NP_00

5.7%

876

97170

4.8

importin subunit beta-1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.12864.12864.2	3.7519	0.1931	2094.611	2093.337	1	440.1	56.2%	1	R.HFIMQVVCEATQCPDTR.V	2
*	step02.18908.18908.2	3.8675	0.1804	2248.653	2247.5735	1	535.3	52.8%	1	R.IQFNDLQSLLCATLQNVLR.K	2
*	step05.15672.15672.2	4.875	0.4835	1614.814	1614.9753	1	1167.9	80.8%	2	K.YMEAFKPFLGIGLK.N	2
*	step05.15116.15116.2	3.7783	0.397	1630.721	1630.9747	1	721.6	76.9%	2	K.YM*EAFKPFLGIGLK.N	2

U	gi\|33188447\|ref\|NP_87	2	4	5.7%	688	77527	5.0	serine/threonine-protein kinase SRPK2 isoform b [Homo sapiens]
U	gi\|33188449\|ref\|NP_87	2	4	5.6%	699	79029	5.2	serine/threonine-protein kinase SRPK2 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.15945.15945.2	3.232	0.4593	1574.903	1574.8877	1	633.3	79.2%	2	K.LKPWSLFDVLVEK.Y	2
	step03.17141.17141.3	3.9091	0.1609	3123.917	3122.5652	39	349.1	25.0%	2	K.YGWPHEDAAQFTDFLIPMLEMVPEKR.A	3

gi|33286436|ref|NP_68

5.7%

652

66699

10.3

gametogenetin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.7706.7706.2	2.2344	0.1496	2191.804	2191.1982	65	155.9	21.2%	1	R.T#S#LVEPEMTSQAMRLT#R.G	2
*	step04.14585.14585.2	2.4253	0.0875	2123.418	2123.1406	19	318.7	26.3%	1	R.IT#PALAT#PASPPTESQAGPR.N	2

U	gi\|195539337\|ref\|NP_0	3	5	5.7%	610	66593	7.4	putative adenosylhomocysteinase 3 isoform b [Homo sapiens]
U	gi\|298286489\|ref\|NP_0	3	5	6.9%	508	56697	8.1	putative adenosylhomocysteinase 3 isoform c [Homo sapiens]
U	gi\|24308043\|ref\|NP_05	3	5	5.7%	611	66721	7.4	putative adenosylhomocysteinase 3 isoform a [Homo sapiens]
U	gi\|195539349\|ref\|NP_0	3	5	6.9%	508	56944	7.1	putative adenosylhomocysteinase 3 isoform d [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.9266.9266.2	3.0322	0.3951	1283.485	1283.416	1	986.2	77.3%	2	K.GIVEESVTGVHR.L	2 2
step04.11103.11103.2	2.2079	0.3006	1537.335	1537.7045	1	482.9	58.3%	1	R.SQVDHVIWPDGKR.I	2 2
step03.10997.10997.2	2.6398	0.2558	1267.422	1267.498	2	607.2	72.2%	2	R.YKQDVYLLPK.K	2 2

Similarities: gi|21361647|ref|NP_00(3:0)

gi|255652953|ref|NP_6

5.6%

953

106379

8.3

zinc finger CCCH domain-containing protein 18 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.7918.7918.2	3.4326	0.3614	1701.551	1700.7891	1	549.1	58.3%	4	R.VQYTETEPYHNYR.E	2
*	step03.6195.6195.2	2.3351	0.2131	1564.995	1563.737	1	401.5	60.7%	1	K.TTAPVPEPTKPGDPR.E	2
*	step04.8368.8368.3	3.8812	0.2971	2634.07	2632.8296	1	523.4	34.4%	5	K.SSQQPSTPQQAPPGQPQQGTFVAHK.E	3

gi|281182408|ref|NP_0

5.6%

396

46252

9.3

gamma-taxilin isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.14452.14452.2	2.3186	0.1181	2026.8	2026.2847	101	135.1	26.7%	1	K.LEES#RSVQKQMKILQK.K	2
	step03.6143.6143.2	2.3069	0.0817	740.798	740.874	1	789.0	100.0%	1	R.HNKTLK.E	2

gi|21281677|ref|NP_64

5.5%

951

105322

7.5

WD repeat-containing protein 36 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11519.11519.2	2.7358	0.3184	2094.153	2094.2104	1	282.0	41.7%	1	R.EFSGHQGQINDMAFSPDGR.W	2
*	step04.15386.15386.2	3.732	0.322	1612.975	1612.9391	1	747.2	71.4%	2	K.SAPFFIPTIPGLVPR.Y	2
*	step02.14348.14348.2	5.2642	0.461	2048.179	2048.3257	1	1013.9	67.6%	2	K.LEEGLVNNKYDTALNLLK.E	2

U	gi\|13489083\|ref\|NP_06	3	4	5.5%	793	88952	4.6	serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 5 [Homo sapiens]
U	gi\|255918200\|ref\|NP_0	3	4	5.6%	791	88909	4.6	serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.14815.14815.2	3.0144	0.0932	1004.435	1004.29065	10	605.6	85.7%	1	R.KLIEFLLK.A	2 2
2	step04.14327.14327.2	3.923	0.4804	1456.912	1456.7362	1	1170.9	87.5%	1	K.HIGTSAIM*DLLLR.L	2 2 2
	step06.13979.13979.3	5.6174	0.4655	2506.975	2507.865	1	1939.9	39.8%	2	R.IANCIVHSTDKGPNSALVQQLIK.D	3 3

Similarities: gi|255918192|ref|NP_0(3:0)
gi|37537701|ref|NP_05(1:2)

U	gi\|117553608\|ref\|NP_0	2	4	5.5%	469	50118	6.9	zinc transporter SLC39A7 [Homo sapiens]
U	gi\|117553619\|ref\|NP_0	2	4	5.5%	469	50118	6.9	zinc transporter SLC39A7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.16883.16883.2	4.4856	0.5353	2694.339	2694.9824	1	1241.5	50.0%	2	R.VSGYLNLAADLAHNFTDGLAIGASFR.G	2
	step05.18078.18078.3	4.6361	0.5134	2695.016	2694.9824	1	1519.8	36.0%	2	R.VSGYLNLAADLAHNFTDGLAIGASFR.G	3

gi|4826998|ref|NP_005

707

76150

9.4

splicing factor, proline- and glutamine-rich [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16702.16702.2	2.7939	0.3482	2639.731	2640.8853	1	982.7	45.5%	1	R.NLSPYVSNELLEEAFSQFGPIER.A	2
*	step02.16684.16684.3	3.5303	0.2166	2640.892	2640.8853	7	691.7	29.5%	1	R.NLSPYVSNELLEEAFSQFGPIER.A	3
*	step03.7522.7522.2	3.8488	0.4962	1342.388	1342.4452	1	1734.2	75.0%	2	R.FGQGGAGPVGGQGPR.G	2

U	gi\|52632383\|ref\|NP_00	3	5	5.4%	589	64133	8.2	heterogeneous nuclear ribonucleoprotein L isoform a [Homo sapiens]
U	gi\|52632385\|ref\|NP_00	3	5	7.0%	456	50561	7.5	heterogeneous nuclear ribonucleoprotein L isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.8477.8477.2	2.2987	0.3415	1884.972	1885.1123	9	215.2	38.2%	1	K.SKPGAAMVEM*ADGYAVDR.A	2
step03.5574.5574.2	2.8848	0.3814	1900.512	1901.1117	1	513.3	61.8%	1	K.SKPGAAMVEMADGYAVDR.A	2
step05.13243.13243.2	4.5933	0.4831	1636.527	1635.8716	1	1230.7	76.9%	3	R.AITHLNNNFMFGQK.L	2

U	gi\|294774574\|ref\|NP_0	2	4	5.4%	556	61314	4.9	serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform d [Homo sapiens]
U	gi\|32455246\|ref\|NP_00	2	4	5.0%	601	66214	4.9	serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform a [Homo sapiens]
U	gi\|32455244\|ref\|NP_85	2	4	4.5%	667	73585	5.1	serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform b [Homo sapiens]
U	gi\|294774576\|ref\|NP_0	2	4	6.3%	474	52214	4.8	serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform isoform e [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.14269.14269.2	4.3397	0.531	1371.637	1371.651	1	2182.9	91.7%	3	K.KLSTIALALGVER.T	2 2
	step05.15247.15247.2	3.9983	0.4752	2077.738	2078.4167	1	628.0	59.4%	1	K.LNSLCM*AWLVDHVYAIR.E	2 2

Similarities: gi|21361399|ref|NP_05(2:0)

gi|32469511|ref|NP_86

480

51618

9.0

B-cell CLL/lymphoma 6 member B protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.8297.8297.2	2.486	0.1125	960.39	960.1149	1	1031.7	92.9%	1	R.FNRPANLK.T	2
	step05.11508.11508.1	2.0721	0.1756	969.655	970.15295	1	368.0	78.6%	10	R.FVQVAHLR.A	1 1 1
	step04.11327.11327.2	3.0182	0.251	970.513	970.15295	1	1044.4	92.9%	25	R.FVQVAHLR.A	2 2 2
	step05.10174.10174.2	2.8571	0.4138	1105.234	1105.272	1	1026.9	77.8%	3	R.AHVLIHTGEK.P	2 2 2

Similarities: gi|195927002|ref|NP_0(3:1)
gi|197927147|ref|NP_0(3:1)

gi|5032069|ref|NP_005

424

44386

8.6

splicing factor 3B subunit 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.16728.16728.3	3.7498	0.5132	2606.652	2607.0667	1	1022.1	35.2%	2	K.VSEPLLWELFLQAGPVVNTHMPK.D	3
*	step05.17434.17434.2	3.0443	0.1492	2607.399	2607.0667	1	499.5	34.1%	1	K.VSEPLLWELFLQAGPVVNTHMPK.D	2
*	step06.16529.16529.3	3.6839	0.3508	2622.872	2623.066	1	904.1	36.4%	1	K.VSEPLLWELFLQAGPVVNTHM*PK.D	3

gi|42734430|ref|NP_03

390

43476

5.6

polymerase I and transcript release factor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.190.190.2	2.546	0.091	1611.038	1610.7502	3	670.8	48.5%	2	R.NFKVM*IY#QDEVK.L	2
*	step02.20602.20602.2	2.3676	0.1718	2304.299	2303.4297	1	399.9	25.9%	1	K.VMIY#QDEVKLPAKLS#IS#K.S	2

gi|32483357|ref|NP_06

278

29537

8.5

dehydrogenase/reductase SDR family member 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.11560.11560.2	2.6646	0.1162	1652.4	1651.8943	4	411.2	46.4%	1	R.MASSGM*TRRDPLANK.V	2
*	step02.18794.18794.2	2.6718	0.0891	1747.514	1747.8737	24	306.1	33.3%	2	R.MASS#GMTRRDPLANK.V	2

gi|32189376|ref|NP_05

5.3%

581

66146

7.9

activating signal cointegrator 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13578.13578.2	4.4045	0.4823	1855.927	1855.0027	1	1185.0	63.3%	2	R.SSGFGLEFNSFQHQLR.I	2
*	step03.9411.9411.2	4.7444	0.4662	1734.661	1733.9037	1	1048.8	82.1%	2	K.KPSPQEVSELQATYR.L	2

gi|155722990|ref|NP_0

5.2%

796

88814

5.2

kanadaptin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14910.14910.3	5.8832	0.5993	3177.665	3178.3179	1	1463.6	35.3%	1	R.ASGPDGECDSNGPGFYLYDLGSTHGTFLNK.T	3
*	step06.15486.15486.2	2.5067	0.264	1219.648	1219.5647	1	928.6	85.0%	2	K.KLTLPLFGAMK.G	2
*	step06.15032.15032.2	2.9175	0.3373	1235.583	1235.5641	1	870.4	85.0%	2	K.KLTLPLFGAM*K.G	2

gi|109134349|ref|NP_0

5.1%

871

97622

5.8

coatomer subunit gamma-2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.10380.10380.2	2.34	0.1204	2989.613	2988.3252	59	93.6	16.0%	1	R.YMKQAIVDKVS#S#VSSSALVSSLHMMK.I	2
*	step03.16990.16990.2	4.3496	0.4218	1998.692	1999.3427	1	739.5	52.9%	1	K.FGAQNESLLPSILVLLQR.C	2

gi|18152783|ref|NP_54

5.1%

214

24519

10.0

60S ribosomal protein L10-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.14428.14428.2	3.5113	0.5815	1253.625	1253.5428	1	1222.8	90.0%	7	R.VHIGQVIMSIR.T	2 2
	step05.13318.13318.2	2.9299	0.4463	1269.045	1269.5422	1	754.5	75.0%	4	R.VHIGQVIM*SIR.T	2 2

Similarities: gi|223890243|ref|NP_0(2:0)

U	gi\|144226847\|ref\|NP_0	7	10	5.0%	1896	206945	5.6	obscurin-like protein 1 isoform 1 precursor [Homo sapiens]
U	gi\|291084534\|ref\|NP_0	7	10	6.1%	1543	168520	5.4	obscurin-like protein 1 isoform 2 precursor [Homo sapiens]
U	gi\|291084513\|ref\|NP_0	7	10	9.2%	1025	113273	5.7	obscurin-like protein 1 isoform 3 precursor [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.8601.8601.2	3.4017	0.5173	1374.628	1374.5206	1	1453.0	86.4%	2	R.LPDSGVYVCHAR.N	2
step03.8980.8980.2	2.4837	0.378	1318.603	1318.4635	1	662.2	65.0%	2	R.FTRPLQDVEGR.E	2
step03.16762.16762.2	5.2387	0.6309	2554.238	2554.8784	1	1605.5	54.3%	1	R.KLDVLEGENAVLLVETLEAGVEGR.W	2
step05.14261.14261.3	3.5333	0.2922	2791.005	2791.127	1	952.3	34.0%	1	R.DGEELPVICQSSSGHMHALVLPGVTR.E	3
step05.14275.14275.2	2.7158	0.159	2792.234	2791.127	1	564.3	40.0%	1	R.DGEELPVICQSSSGHMHALVLPGVTR.E	2
step05.15204.15204.2	4.4449	0.5201	2471.334	2470.8496	1	480.8	55.0%	2	K.NTVLLTWKPPEPAPETPFIYR.L	2
step04.14430.14430.3	5.0201	0.454	2472.113	2470.8496	1	1156.6	38.8%	1	K.NTVLLTWKPPEPAPETPFIYR.L	3

U	gi\|33469917\|ref\|NP_87	4	5	5.0%	863	96558	6.7	DNA replication licensing factor MCM4 [Homo sapiens]
U	gi\|33469919\|ref\|NP_00	4	5	5.0%	863	96558	6.7	DNA replication licensing factor MCM4 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.15816.15816.2	2.8584	0.3047	1303.594	1303.5784	1	1288.1	77.3%	1	K.GILLQLFGGTRK.D	2
step06.14592.14592.2	4.4267	0.4893	1865.164	1865.1667	1	857.3	66.7%	1	K.KTTIENIQLPHTLLSR.F	2
step04.13389.13389.2	3.3777	0.2338	1736.609	1736.9938	1	760.9	64.3%	1	K.TTIENIQLPHTLLSR.F	2
step03.6146.6146.2	4.6431	0.3917	1701.737	1701.9031	1	1291.8	71.4%	2	R.LSNKVEAIDVEEAKR.L	2

gi|156119605|ref|NP_0

5.0%

822

91982

6.7

general transcription factor 3C polypeptide 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.15257.15257.3	4.4905	0.2818	2499.95	2499.8445	1	1259.8	34.5%	1	R.SIAVLELICDVHNPGQDLVIHR.T	3
*	step02.18750.18750.2	3.8567	0.4227	2125.719	2126.3518	1	2401.5	66.7%	1	K.TFEEAAAQLLESSVQNLFK.Q	2
*	step02.18746.18746.3	4.7678	0.5032	2126.811	2126.3518	1	2269.6	50.0%	2	K.TFEEAAAQLLESSVQNLFK.Q	3

U	gi\|205360838\|ref\|NP_0	2	4	5.0%	480	52489	9.3	dnaJ homolog subfamily A member 3, mitochondrial isoform 1 [Homo sapiens]
U	gi\|205360840\|ref\|NP_0	2	4	5.3%	453	49612	9.4	dnaJ homolog subfamily A member 3, mitochondrial isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.17652.17652.3	4.5812	0.4606	2499.665	2498.78	1	631.9	30.4%	2	R.RDGADIHSDLFISIAQALLGGTAR.A	3
	step02.18167.18167.2	6.875	0.572	2342.835	2342.5935	1	2805.6	63.6%	2	R.DGADIHSDLFISIAQALLGGTAR.A	2

gi|156616275|ref|NP_0

4.9%

1107

123631

7.0

DNA polymerase delta catalytic subunit [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.14652.14652.2	3.8867	0.3311	1594.516	1594.9602	1	1375.4	64.3%	2	R.LALTLRPCAPILGAK.V	2
*	step03.17727.17727.2	3.6341	0.4309	1537.656	1537.829	1	955.5	76.9%	2	K.GLLPQILENLLSAR.K	2
*	step03.15788.15788.3	4.8027	0.4533	2792.21	2792.0916	1	1142.0	32.3%	2	R.LLIDRDPEGAVAHAQDVISDLLCNR.I	3

gi|23510356|ref|NP_11

4.9%

568

65583

6.2

serine/threonine-protein kinase RIO1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.8433.8433.2	2.614	0.0961	1767.268	1766.5955	4	340.6	39.3%	1	K.EANVYHAST#ANGES#R.A	2
*	step02.4738.4738.2	2.5135	0.1355	1755.342	1755.8091	5	351.5	36.1%	2	K.DRDKYVS#GEFRFR.H	2

gi|4503507|ref|NP_001

4.9%

472

51110

8.4

eukaryotic translation initiation factor 2 subunit 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.9407.9407.2	3.4293	0.26	1511.785	1511.7484	1	683.4	57.7%	2	K.VGQEIEVRPGIVSK.D	2
*	step05.11870.11870.2	2.297	0.2757	1124.37	1124.4153	1	779.2	81.2%	1	K.LMCKPIFSK.I	2

U	gi\|29029589\|ref\|NP_80	2	4	4.9%	327	35867	5.9	putative ribosomal RNA methyltransferase 1 isoform b [Homo sapiens]
U	gi\|7110661\|ref\|NP_036	2	4	4.9%	329	36079	5.7	putative ribosomal RNA methyltransferase 1 isoform a [Homo sapiens]
U	gi\|29029591\|ref\|NP_80	2	4	4.9%	327	35867	5.9	putative ribosomal RNA methyltransferase 1 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.14932.14932.2	5.4231	0.519	1935.87	1936.2434	1	2802.0	80.0%	2	K.LLQLDKEFQLFQGVTR.A	2
	step04.14921.14921.3	5.395	0.3794	1936.584	1936.2434	1	2312.8	51.7%	2	K.LLQLDKEFQLFQGVTR.A	3

U	gi\|20127479\|ref\|NP_00	4	8	4.8%	930	103533	6.0	RNA-binding protein 10 isoform 1 [Homo sapiens]
U	gi\|23111018\|ref\|NP_69	4	8	5.3%	852	94370	6.7	RNA-binding protein 10 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.16327.16327.2	6.0843	0.5238	2829.244	2829.182	1	1350.6	50.0%	1	R.NLNPHSTMDSILGALAPYAVLSSSNVR.V	2
step05.15722.15722.3	4.63	0.4123	2845.787	2845.1812	1	1163.7	32.7%	2	R.NLNPHSTM*DSILGALAPYAVLSSSNVR.V	3
step05.15739.15739.2	4.9232	0.533	2846.043	2845.1812	1	1514.5	51.9%	2	R.NLNPHSTM*DSILGALAPYAVLSSSNVR.V	2
step03.9104.9104.2	3.6895	0.3557	1976.296	1975.1022	1	383.0	50.0%	3	R.GSSYGVTSTESYKETLHK.T	2

gi|154759257|ref|NP_7

4.8%

666

72457

8.2

ATP-dependent RNA helicase DDX51 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.18459.18459.2	3.8023	0.3646	1627.534	1627.9952	1	1041.1	78.6%	1	K.TLAFVIPVVQALLSR.V	2
*	step03.18468.18468.3	4.2242	0.4567	1628.279	1627.9952	1	2444.3	55.4%	2	K.TLAFVIPVVQALLSR.V	3
*	step03.12604.12604.2	2.4189	0.2022	1966.953	1968.2024	1	442.4	40.6%	1	R.LVDHIDQTPGFSLQQLR.F	2

gi|7657455|ref|NP_055

4.8%

588

68003

7.3

pescadillo homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.12405.12405.2	2.2128	0.0807	1210.505	1210.4497	1	1370.1	83.3%	1	R.FLLHEPIVNK.F	2
*	step06.11944.11944.2	4.5466	0.4185	2005.677	2006.2554	1	791.6	61.8%	2	R.ITHQIVDRPGQQTSVIGR.C	2

gi|24431950|ref|NP_00

4.8%

522

58449

7.4

U4/U6 small nuclear ribonucleoprotein Prp4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14212.14212.2	3.0745	0.2735	1725.988	1724.9781	1	437.1	61.5%	1	K.LWSVPDCNLLHTLR.G	2
*	step06.14309.14309.2	2.5622	0.3791	1322.504	1322.5387	1	773.5	75.0%	1	K.IWTHPGWSPLK.T	2

gi|38569394|ref|NP_00

1332

150254

5.9

elongator complex protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18405.18405.3	3.8045	0.2435	3328.287	3328.6738	1	450.5	25.9%	2	K.VNDLLWNADSSVLAVWLEDLQREESSIPK.T	3
*	step05.15097.15097.2	3.8723	0.4658	1719.785	1719.0186	1	1524.7	80.8%	3	K.YLWESPSLAIKPWK.N	2
*	step04.13324.13324.3	5.2072	0.3985	2345.827	2345.6804	1	1453.5	43.4%	2	K.YNRLDIIETNVKPSILEAQK.N	3

gi|64464726|ref|NP_05

1352

147289

5.3

KN motif and ankyrin repeat domain-containing protein 1 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13778.13778.3	3.5425	0.1201	3035.494	3035.0823	1	425.9	19.9%	1	-.MAHTTKVNGS#AS#GKAGDILSGDQDKEQK.D	3
	step01.5004.5004.2	2.6221	0.1299	2003.28	2001.9358	108	141.7	31.2%	1	R.S#IGCGDCSVDVT#VCSPK.E	2 2
	step06.12991.12991.2	3.0369	0.1548	2269.818	2270.315	61	148.8	23.3%	2	K.MRT#IACGPPQLT#VGLTAS#R.R	2 2

Similarities: gi|23510377|ref|NP_69(2:1)

gi|54112121|ref|NP_03

1217

135577

5.3

splicing factor 3B subunit 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.12455.12455.2	3.699	0.4287	1608.831	1608.7794	1	826.7	60.0%	1	R.ATGISFAIHGNFSGTK.Q	2
*	step03.10793.10793.2	2.3156	0.3419	1196.545	1196.3783	1	615.9	70.0%	1	R.LTISSPLEAHK.A	2
*	step06.14318.14318.2	5.082	0.5869	1680.805	1680.8921	1	2785.3	89.3%	2	K.HIANYISGIQTIGHR.V	2
*	step06.14368.14368.3	4.0671	0.286	1681.991	1680.8921	1	1658.8	51.8%	2	K.HIANYISGIQTIGHR.V	3
*	step02.9492.9492.2	3.4926	0.3069	1700.654	1700.8289	1	1022.7	67.9%	1	K.NVSEELDRTPPEVSK.K	2

gi|37537701|ref|NP_05

932

101246

4.9

serine/threonine-protein phosphatase 6 regulatory subunit 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.846.846.3	4.9397	0.5321	3450.713	3449.8926	1	929.6	27.5%	2	R.LGGDESLLSLLYDFLDHEPPLNPLLASFFSK.T	3
*2	step04.14327.14327.2	3.923	0.4804	1456.912	1456.7362	1	1170.9	87.5%	1	K.HIGTSALM*DLLLR.L	2 2 2

Similarities: gi|255918192|ref|NP_0(1:1)
gi|13489083|ref|NP_06(1:1)

gi|33589814|ref|NP_00

766

88170

5.6

protein zer-1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15846.15846.2	4.3649	0.4006	1638.779	1638.9365	1	969.3	80.8%	4	R.RVNELLLSILNPTR.Q	2
*	step04.17778.17778.2	3.153	0.2687	2568.723	2568.9734	5	190.4	33.3%	1	K.ELRPQLMTSQFISVFSNLLESK.A	2

gi|4826686|ref|NP_004

740

82432

7.2

ATP-dependent RNA helicase DDX1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18294.18294.2	3.4995	0.5203	1880.589	1880.2166	1	379.9	59.4%	1	K.TGAFSIPVIQIVYETLK.D	2
*	step05.15694.15694.2	5.9247	0.5052	2135.9	2135.41	1	1556.0	70.6%	3	K.EAQTSFLHLGYLPNQLFR.T	2
*	step05.15706.15706.3	4.1671	0.2881	2136.757	2135.41	1	1123.7	44.1%	1	K.EAQTSFLHLGYLPNQLFR.T	3

gi|21359972|ref|NP_11

684

77163

5.6

kelch repeat and BTB domain-containing protein 7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.15202.15202.3	5.5496	0.5451	2694.26	2694.0547	1	1202.8	42.9%	2	R.WMHFTEEDQDYLEGLLTKPIVK.K	3 3
	step05.14036.14036.2	2.3651	0.3523	1233.388	1233.4669	1	473.2	72.2%	1	K.EMVIFFGHPR.D	2 2

Similarities: gi|45333883|ref|NP_69(2:0)

gi|13562114|ref|NP_11

451

50327

5.2

tubulin beta-1 chain [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.10832.10832.1	2.1846	0.2528	1130.717	1131.2664	1	277.6	66.7%	1	R.FPGQLNADLR.K	1 1 1 1 1 1 1 1 1 1
step02.11042.11042.2	3.013	0.4079	1131.393	1131.2664	1	848.0	94.4%	4	R.FPGQLNADLR.K	2 2 2 2 2 2 2 2 2 2
step04.10136.10136.2	2.7872	0.382	1259.398	1259.4392	1	752.3	80.0%	7	R.FPGQLNADLRK.L	2 2 2 2 2 2 2 2 2 2
step06.14200.14200.2	3.8338	0.4589	1272.57	1272.5878	1	1504.8	90.0%	2	R.KLAVNMVPFPR.L	2 2 2 2 2 2 2 2 2
step06.13178.13180.2	3.0521	0.3533	1288.75	1288.5872	1	815.7	80.0%	1	R.KLAVNM*VPFPR.L	2 2 2 2 2 2 2 2 2
step03.2450.2450.2	3.818	0.4577	1143.686	1144.4148	1	1048.0	94.4%	37	K.LAVNMVPFPR.L	2 2 2 2 2 2 2 2 2
step03.12213.12213.1	2.111	0.3746	1143.734	1144.4148	8	261.9	61.1%	2	K.LAVNMVPFPR.L	1 1 1 1 1 1 1 1 1
step03.10961.10961.2	2.9904	0.3932	1160.312	1160.4142	1	974.6	83.3%	2	K.LAVNM*VPFPR.L	2 2 2 2 2 2 2 2 2

gi|15147337|ref|NP_05

4.6%

2799

309352

5.8

E3 ubiquitin-protein ligase UBR5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13157.13157.2	2.2499	0.2236	2052.667	2052.3193	1	238.8	47.1%	1	K.YNLNSHPPLNVLEQATIK.Q	2
	step05.14887.14887.2	5.8226	0.5248	2029.345	2028.2994	1	2980.5	76.3%	3	R.NNPLYHAGAVAFSISAGIPK.V	2 2
	step02.18684.18684.2	2.5836	0.2764	1859.125	1860.2185	1	840.1	53.1%	1	K.CTADILLLDTLLGTLVK.E	2 2
	step02.17003.17003.2	3.2586	0.4886	1400.366	1400.6279	1	1291.7	77.3%	1	R.GDFLNYALSLMR.S	2 2
	step04.11901.11901.2	4.9312	0.4446	2201.574	2202.3667	1	1109.9	60.0%	2	R.KEDLFGRPSQGLYSSSASSGK.C	2 2
	step02.16564.16564.2	4.0886	0.4193	1691.283	1690.8772	1	1498.1	67.9%	2	R.SFYTAIAQAFLSNEK.L	2 2
	step04.16425.16425.2	2.6096	0.2813	3085.941	3086.4377	1	517.1	34.6%	1	R.SFYTAIAQAFLSNEKLPNLECIQNANK.G	2 2
	step04.16400.16400.3	7.1291	0.4811	3086.806	3086.4377	1	4572.0	46.2%	4	R.SFYTAIAQAFLSNEKLPNLECIQNANK.G	3 3
	step04.12521.12521.2	3.3221	0.3194	1495.64	1495.8391	1	1707.4	83.3%	1	R.MLVVAEQPLHAMR.K	2 2
	step04.11483.11483.2	3.3212	0.4073	1511.33	1511.8385	1	1121.0	83.3%	2	R.MLVVAEQPLHAM*R.K	2 2

Similarities: gi|310128854|ref|XP_0(9:1)

U	gi\|148536853\|ref\|NP_0	3	4	4.6%	1224	138345	7.7	coatomer subunit alpha isoform 2 [Homo sapiens]
U	gi\|148536855\|ref\|NP_0	3	4	4.5%	1233	139324	7.6	coatomer subunit alpha isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.14455.14455.3	3.8079	0.2994	2720.966	2720.047	1	783.4	29.3%	1	R.SGSKFPVFNM*SYNPAENAVLLCTR.A	3
step02.15004.15004.2	2.4189	0.0994	2176.869	2176.2852	26	188.7	20.3%	2	K.NFDKLS#FLYLIT#GNLEK.L	2
step03.13097.13097.2	2.7991	0.2303	1602.79	1601.8699	5	305.9	42.9%	1	R.VTTVTEIGKDVIGLR.I	2

U	gi\|164419743\|ref\|NP_0	3	12	4.6%	882	98666	10.0	ATP-dependent RNA helicase DDX54 isoform 1 [Homo sapiens]
U	gi\|51094101\|ref\|NP_07	3	12	4.7%	881	98595	10.0	ATP-dependent RNA helicase DDX54 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.17525.17525.2	3.9414	0.5016	2762.304	2762.1519	1	759.0	47.9%	7	R.SGTAYSLVAPDEIPYLLDLHLFLGR.S	2
step03.17474.17474.3	4.0325	0.5013	2763.196	2762.1519	14	399.3	27.1%	3	R.SGTAYSLVAPDEIPYLLDLHLFLGR.S	3
step03.14717.14717.2	3.6991	0.5381	1772.768	1772.0616	1	600.5	60.0%	2	K.EMDLVGLGLHPLFSSR.F	2

gi|116292162|ref|NP_0

4.6%

569

63605

7.0

nitrogen permease regulator 3-like protein isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.18562.18562.2	3.71	0.4486	1721.561	1722.0874	1	1727.4	71.4%	4	R.EAPTMILFNVVFALR.A	2
*	step03.17753.17753.3	3.9558	0.2765	1738.088	1738.0868	1	714.1	44.6%	3	R.EAPTM*ILFNVVFALR.A	3
*	step02.18066.18066.2	3.6481	0.3331	1738.478	1738.0868	1	1101.1	64.3%	7	R.EAPTM*ILFNVVFALR.A	2
	step05.15733.15733.2	3.1261	0.3613	1414.554	1414.6978	1	492.2	80.0%	2	R.SQLLM*LFDKFR.S	2

gi|157057545|ref|NP_0

4.5%

624

69007

6.5

sorting nexin-18 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.14479.14479.2	3.6856	0.2773	1363.607	1363.629	1	1374.4	81.8%	2	K.FPVISVPHLPEK.Q	2
*	step06.15374.15374.2	4.2134	0.425	2052.505	2052.3877	1	1002.3	56.7%	1	K.SQMQHFLQQQIIFFQK.V	2

U	gi\|13376181\|ref\|NP_07	5	10	4.5%	446	49909	6.0	tubulin alpha chain-like 3 isoform 1 [Homo sapiens]
U	gi\|285395246\|ref\|NP_0	5	10	4.9%	406	45518	6.3	tubulin alpha chain-like 3 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.12342.12342.2	3.2115	0.3348	1250.231	1250.4795	1	807.8	87.5%	2	K.YMACCLLYR.G	2 2 2 2 2
step04.12386.12386.2	2.9708	0.3185	1381.589	1381.6246	1	334.7	75.0%	2	R.LDHKFDLMYAK.R	2 2 2 2 2 2 2
step04.12408.12408.1	2.8736	0.3116	1382.03	1381.6246	1	606.4	65.0%	3	R.LDHKFDLMYAK.R	1 1 1 1 1 1 1
step04.12402.12402.3	3.9649	0.4036	1382.125	1381.6246	1	1217.5	62.5%	2	R.LDHKFDLMYAK.R	3 3 3 3 3 3 3
step01.7438.7438.2	2.2063	0.2213	888.049	888.06573	2	781.6	100.0%	1	K.FDLMYAK.R	2 2 2 2 2 2 2 2

gi|106507301|ref|NP_0

1462

165912

5.8

DNA polymerase alpha catalytic subunit [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.15521.15521.2	2.4285	0.1173	2372.585	2372.751	7	313.4	26.7%	1	K.DVSPPPLVVMAFSMKT#MQNAK.N	2
*	step06.1874.1874.2	2.2359	0.0942	2485.545	2486.5476	79	193.7	18.8%	1	K.Y#AALVVEPTSDGNYVT#KQELK.G	2
*	step03.12170.12170.2	2.9954	0.0814	2523.956	2524.4248	2	247.0	25.0%	1	K.DEENDALLGGPAQLT#DEEKY#R.D	2

U	gi\|223278379\|ref\|NP_0	3	3	4.3%	1297	143702	8.8	RRP12-like protein isoform 1 [Homo sapiens]
U	gi\|223278381\|ref\|NP_0	3	3	4.5%	1236	137114	8.7	RRP12-like protein isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.7686.7686.2	2.3383	0.1121	2129.677	2129.1465	91	209.9	21.2%	1	K.SGGS#KEAT#TTLHMLT#LLK.D	2
step06.15742.15742.3	3.8432	0.4959	2678.58	2679.0579	1	790.7	33.3%	1	R.FFGTAVTCLLSPHSQVLTAATQSLK.E	3
step04.12393.12393.2	2.3922	0.2312	1533.411	1532.7278	48	206.2	45.8%	1	K.GRPDPYAYIPLNR.S	2

gi|4505941|ref|NP_000

1174

133896

6.9

DNA-directed RNA polymerase II subunit RPB2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.6176.6176.2	4.9831	0.434	1897.626	1897.0793	1	1317.2	73.3%	3	K.TVIKEGEEQLQTQHQK.T	2
*	step05.13884.13884.2	2.7431	0.3613	1246.925	1246.4404	1	887.4	80.0%	1	R.LTFASTLSHLR.R	2
*	step05.12806.12806.2	2.3659	0.0929	1242.668	1241.5419	23	637.7	61.1%	2	R.ICRPLLIVEK.Q	2
*	step03.12905.12905.2	3.4007	0.2766	1552.181	1551.7279	1	986.6	66.7%	1	K.ISNLLSDYGYHLR.G	2

gi|8051636|ref|NP_009

962

109964

5.4

exportin-T [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16889.16890.2	3.8691	0.2365	2127.593	2127.4495	1	558.8	58.8%	2	R.ETLISWLQAQMLNPQPEK.T	2
*	step05.15571.15571.3	4.7231	0.376	2443.838	2443.8062	1	888.2	35.2%	1	R.LLYMLAEALPVSHGAHFSGDVSK.A	3

gi|221136844|ref|NP_0

667

75381

4.9

neuroblastoma breakpoint family, member 6 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14993.14993.2	2.2039	0.1989	1787.565	1787.7441	65	148.3	25.0%	1	R.NRQS#LEPGELT#NLR.D	2
	step02.16445.16445.2	2.6127	0.0891	1749.362	1748.0441	112	204.0	26.2%	1	R.QVTGRIRAS#LVLILK.T	2

gi|10835059|ref|NP_00

437

48774

5.8

protein farnesyltransferase subunit beta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.16273.16273.2	4.1073	0.4124	2245.848	2246.5889	1	896.1	52.8%	1	K.LVDGCYSFWQAGLLPLLHR.A	2
*	step06.16274.16274.3	4.9219	0.4715	2247.893	2246.5889	1	601.6	45.8%	1	K.LVDGCYSFWQAGLLPLLHR.A	3

U	gi\|15011974\|ref\|NP_00	2	3	4.2%	958	108242	6.9	rho guanine nucleotide exchange factor 2 isooform 3 [Homo sapiens]
U	gi\|253735778\|ref\|NP_0	2	3	4.1%	985	111471	7.3	rho guanine nucleotide exchange factor 2 isoform 2 [Homo sapiens]
U	gi\|253735775\|ref\|NP_0	2	3	4.1%	986	111543	7.3	rho guanine nucleotide exchange factor 2 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.15793.15793.2	3.6531	0.539	2303.447	2303.7283	1	881.3	57.9%	2	K.YIFPTLDKPSVVSLQNLIVR.D	2
	step05.12394.12394.2	2.2611	0.0874	2385.767	2384.5054	24	107.2	22.4%	1	K.GM*FLISAAPPEMYEVHT#AS#R.D	2

U	gi\|221316630\|ref\|NP_0	3	4	4.2%	953	107142	6.0	coatomer subunit beta [Homo sapiens]
U	gi\|7705369\|ref\|NP_057	3	4	4.2%	953	107142	6.0	coatomer subunit beta [Homo sapiens]
U	gi\|221316632\|ref\|NP_0	3	4	4.2%	953	107142	6.0	coatomer subunit beta [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.16454.16454.3	6.3988	0.4628	2492.389	2491.7827	1	1838.9	43.8%	2	R.NFEHLIPDAPELIHDFLVNEK.D	3
step03.16478.16478.2	2.7046	0.2844	2492.953	2491.7827	24	162.8	30.0%	1	R.NFEHLIPDAPELIHDFLVNEK.D	2
step06.14101.14101.2	3.557	0.5082	2090.523	2091.4385	1	582.7	50.0%	1	K.LVEKPSPLTLAPHDFANIK.A	2

U	gi\|13514809\|ref\|NP_00	2	2	4.2%	660	73154	7.6	ATP-dependent RNA helicase DDX3Y [Homo sapiens]
U	gi\|169881239\|ref\|NP_0	2	2	4.2%	660	73154	7.6	ATP-dependent RNA helicase DDX3Y [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.11709.11709.2	3.8594	0.3667	1888.789	1889.1418	1	542.9	53.1%	1	R.VRPCVVYGGADIGQQIR.D	2 2
	step05.10694.10694.2	2.4239	0.4325	1181.372	1181.3635	1	844.0	65.0%	1	R.GCHLLVATPGR.L	2 2

Similarities: gi|301171467|ref|NP_0(2:0)

gi|38016914|ref|NP_05

4.2%

626

72201

7.1

SAM domain and HD domain-containing protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13394.13394.2	2.4622	0.1522	1356.365	1356.5518	1	756.2	70.0%	2	K.SFLYEIVSNKR.N	2
*	step02.17476.17476.2	5.1744	0.498	1651.663	1651.9491	1	2233.8	82.1%	2	K.VGNIIDTMITDAFLK.A	2

U	gi\|16306500\|ref\|NP_05	2	3	4.2%	621	71479	6.0	F-box only protein 21 isoform 2 [Homo sapiens]
U	gi\|16306502\|ref\|NP_29	2	3	4.1%	628	72270	6.1	F-box only protein 21 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.13914.13914.2	4.122	0.4279	1944.847	1945.0762	1	1261.8	75.0%	2	K.HYSPTDYVNWLEEYK.V	2
	step06.15703.15703.2	3.0004	0.2241	1403.396	1403.6516	1	2179.3	85.0%	1	R.LYFHLGIWPEK.V	2

U	gi\|296080761\|ref\|NP_0	2	2	4.2%	593	66361	8.0	parathyroid hormone/parathyroid hormone-related peptide receptor precursor [Homo sapiens]
U	gi\|4506271\|ref\|NP_000	2	2	4.2%	593	66361	8.0	parathyroid hormone/parathyroid hormone-related peptide receptor precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.8508.8508.2	2.4017	0.1021	1613.173	1613.4928	15	475.5	35.4%	1	K.AS#GKLYPES#EEDK.E	2
	step02.20236.20236.2	3.1533	0.1065	1770.789	1769.8085	26	404.3	38.6%	1	R.CDT#RQQY#RKLLK.S	2

gi|229093316|ref|NP_7

4.2%

589

65472

6.8

putative phospholipase B-like 2 isoform 1 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.9035.9035.2	2.3131	0.2792	1143.76	1143.2771	1	379.1	72.7%	1	K.AFIPGGPSPGSR.V	2
	step02.13899.13899.2	3.672	0.4388	1623.036	1622.7964	1	965.8	83.3%	1	R.YNDFLHDPLSLCK.A	2

gi|5901922|ref|NP_008

4.2%

378

44468

5.2

hsp90 co-chaperone Cdc37 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.6134.6134.2	4.2523	0.361	1771.977	1771.9933	1	2383.6	83.3%	2	K.LKELEVAEGGKAELER.L	2
*	step02.9916.9916.2	2.5474	0.3723	1531.528	1530.6622	1	439.1	57.7%	1	K.ELEVAEGGKAELER.L	2

gi|13186316|ref|NP_05

4.1%

641

74576

7.1

calpain-6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.22073.22074.2	2.2955	0.0805	1463.184	1462.4142	103	163.7	36.1%	1	R.Y#T#ELVEEKYK.L	2
*	step03.8794.8794.2	2.2933	0.1139	2000.043	2000.9087	164	165.8	21.3%	1	R.AGTSTY#IDTRT#VFLS#K.Y	2

gi|4505895|ref|NP_002

4.1%

514

57194

9.2

pleiotropic regulator 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12667.12667.2	2.3791	0.3184	1124.468	1124.3202	1	725.5	77.8%	1	R.VISGHLGWVR.C	2
*	step04.11669.11669.2	3.3392	0.4828	1183.999	1184.3707	1	1116.8	90.0%	1	K.LSLTGHISTVR.G	2

gi|71274152|ref|NP_00

1288

139655

8.1

chromosome 2 open reading frame 71 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.4856.4856.2	2.3931	0.1516	2773.732	2772.9885	6	197.1	23.6%	1	K.DMEGLIPGTKTSSSQLNKS#QSHM*AK.D	2
*	step01.4012.4012.3	3.5936	0.2312	3029.019	3029.0356	1	614.1	20.4%	1	R.SLPSSYRPAQPSPSAVQT#PPS#PPVS#PR.V	3

gi|21361794|ref|NP_06

1230

136375

5.8

cullin-associated NEDD8-dissociated protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17518.17518.3	3.6161	0.3115	2066.398	2066.4753	1	1366.0	44.4%	1	K.IDLRPVLGEGVPILASFLR.K	3
*	step02.17396.17396.2	4.1412	0.3869	1484.729	1484.7661	1	1333.0	73.1%	2	K.ISGSILNELIGLVR.S	2
*	step04.11463.11463.2	3.1661	0.4515	1734.708	1734.9982	1	965.5	63.3%	1	R.MLTGPVYSQSTALTHK.Q	2

U	gi\|226497574\|ref\|NP_0	2	3	4.0%	960	107332	6.5	probable RNA-binding protein 19 [Homo sapiens]
U	gi\|226497734\|ref\|NP_0	2	3	4.0%	960	107332	6.5	probable RNA-binding protein 19 [Homo sapiens]
U	gi\|226497654\|ref\|NP_0	2	3	4.0%	960	107332	6.5	probable RNA-binding protein 19 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.15630.15630.2	3.8221	0.4249	1698.723	1699.0969	1	847.3	75.0%	2	K.NVMEFLAPLKPVAIR.I	2
	step04.16337.16337.2	5.2226	0.5872	2387.089	2386.6514	1	1112.5	52.3%	1	K.NLPAGTLAAQLQETFGHFGSLGR.V	2

gi|33356547|ref|NP_00

904

101896

5.5

DNA replication licensing factor MCM2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.11583.11583.2	2.2126	0.0924	2071.081	2070.1453	75	173.7	27.5%	1	-.M*AESSES#FTMASSPAQRR.R	2
*	step02.11824.11824.2	2.4025	0.1553	2032.943	2033.2247	3	292.3	41.2%	1	R.FGAQQDTIEVPEKDLVDK.A	3 3 2

U	gi\|257467482\|ref\|NP_0	2	4	4.0%	825	93620	9.3	protein argonaute-2 isoform 2 [Homo sapiens]
U	gi\|29337286\|ref\|NP_80	2	4	5.3%	626	71211	9.0	protein argonaute-3 isoform b [Homo sapiens]
U	gi\|29294647\|ref\|NP_07	2	4	3.8%	860	97360	9.1	protein argonaute-3 isoform a [Homo sapiens]
U	gi\|29171734\|ref\|NP_03	2	4	3.8%	859	97208	9.2	protein argonaute-2 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.13641.13641.2	3.997	0.4384	1870.664	1871.1233	1	1412.7	83.3%	2	K.HTYLPLEVCNIVAGQR.C	2
	step06.15192.15192.2	3.8542	0.475	1863.848	1863.151	1	729.9	62.5%	2	R.SVSIPAPAYYAHLVAFR.A	2

gi|8922534|ref|NP_060

420

47020

8.7

RNA methyltransferase-like protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.15619.15619.2	4.5813	0.4744	2034.717	2035.37	1	1033.6	62.5%	3	K.TQLQHSLPLLLICDNLR.D	2
*	step05.15718.15718.3	3.689	0.1264	2036.584	2035.37	1	1823.7	46.9%	1	K.TQLQHSLPLLLICDNLR.D	3

gi|310128854|ref|XP_0

2806

310363

6.0

PREDICTED: e3 ubiquitin-protein ligase UBR5-like isoform 1, partial [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.14887.14887.2	5.8226	0.5248	2029.345	2028.2994	1	2980.5	76.3%	3	R.NNPLYHAGAVAFSISAGIPK.V	2 2
step02.18684.18684.2	2.5836	0.2764	1859.125	1860.2185	1	840.1	53.1%	1	K.CTADILLLDTLLGTLVK.E	2 2
step02.17003.17003.2	3.2586	0.4886	1400.366	1400.6279	1	1291.7	77.3%	1	R.GDFLNYALSLMR.S	2 2
step04.11901.11901.2	4.9312	0.4446	2201.574	2202.3667	1	1109.9	60.0%	2	R.KEDLFGRPSQGLYSSSASSGK.C	2 2
step02.16564.16564.2	4.0886	0.4193	1691.283	1690.8772	1	1498.1	67.9%	2	R.SFYTAIAQAFLSNEK.L	2 2
step04.16425.16425.2	2.6096	0.2813	3085.941	3086.4377	1	517.1	34.6%	1	R.SFYTAIAQAFLSNEKLPNLECIQNANK.G	2 2
step04.16400.16400.3	7.1291	0.4811	3086.806	3086.4377	1	4572.0	46.2%	4	R.SFYTAIAQAFLSNEKLPNLECIQNANK.G	3 3
step04.12521.12521.2	3.3221	0.3194	1495.64	1495.8391	1	1707.4	83.3%	1	R.MLVVAEQPLHAMR.K	2 2
step04.11483.11483.2	3.3212	0.4073	1511.33	1511.8385	1	1121.0	83.3%	2	R.MLVVAEQPLHAM*R.K	2 2

Similarities: gi|15147337|ref|NP_05(9:0)

gi|28372497|ref|NP_77

1749

200209

6.0

E3 ubiquitin-protein ligase UBR1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.15127.15127.2	5.2126	0.4935	2073.734	2073.4817	1	903.0	55.9%	1	R.EIIHLLCIEPMPHSAIAK.N	2
*	step05.258.258.3	4.6523	0.3413	3261.585	3261.7576	1	830.2	25.9%	3	R.AIDTDSNLWTEGMLQMAFHILALGLLEEK.Q	3
*	step03.14909.14909.2	4.4224	0.5083	2494.055	2493.7073	1	719.8	52.5%	2	R.NSLIELPDDYSCLLNQASHFR.C	2

U	gi\|209862859\|ref\|NP_0	3	5	3.9%	1594	180403	6.7	DEP domain-containing protein 5 isoform 3 [Homo sapiens]
U	gi\|7662222\|ref\|NP_055	3	5	3.9%	1572	177909	6.7	DEP domain-containing protein 5 isoform 1 [Homo sapiens]
U	gi\|55749924\|ref\|NP_00	3	5	11.1%	559	63748	7.4	DEP domain-containing protein 5 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.15083.15083.3	4.4818	0.4741	2464.234	2464.7986	1	1447.1	40.5%	1	K.LGDIVEIAHPNDEYSPLLLQVK.S	3
step04.15166.15166.3	4.4532	0.2754	2565.858	2565.8613	1	1074.8	32.1%	1	K.SLKEDLQKETISVDQTVTQVFR.L	3
step02.15941.15941.2	3.3152	0.3785	2125.69	2126.395	8	269.3	44.1%	3	K.DVTLDLVELTFKDQYIGR.G	2

gi|145312251|ref|NP_0

1130

126562

6.9

ephrin type-A receptor 6 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.417.417.3	3.6525	0.0953	3218.516	3218.0356	9	464.1	21.9%	1	R.VEEEEEEEEEDVDKDPHPT#QNT#CLR.C	3
*	step02.18960.18960.2	2.7805	0.1478	2460.863	2459.4844	148	178.2	26.4%	1	K.CPPHS#LTY#MEATSVCQCEK.G	2

U	gi\|29725607\|ref\|NP_06	3	4	3.9%	944	103077	6.1	protein unc-45 homolog A isoform 2 [Homo sapiens]
U	gi\|89179321\|ref\|NP_00	3	4	4.0%	929	101675	6.1	protein unc-45 homolog A isoform 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.18293.18293.3	4.1435	0.5468	2083.705	2084.4028	1	1704.5	43.4%	2	K.VLISNLLDLLTEVGVSGQGR.D	3
step02.18275.18275.2	2.2436	0.2781	2085.655	2084.4028	1	133.8	44.7%	1	K.VLISNLLDLLTEVGVSGQGR.D	2
step02.13960.13960.2	2.3225	0.194	2080.643	2081.08	135	119.0	22.5%	1	R.AS#FIT#ANGVSLLKDLY#K.C	2

gi|148762982|ref|NP_9

908

98148

8.4

protein DLN-1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.9042.9042.2	2.7743	0.3604	2088.863	2088.4028	1	277.1	40.0%	2	R.VGRALATKAPPPERAAAASPR.P	2
*	step02.18452.18452.2	2.2542	0.0801	1742.055	1741.6675	151	183.0	26.9%	1	R.DGDLWPAY#SLNTT#K.D	2

gi|20270337|ref|NP_62

666

75404

4.5

RNA polymerase-associated protein LEO1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.13156.13156.2	3.4627	0.351	1518.588	1518.7043	1	758.4	79.2%	2	K.APLQGDHNHLFIR.Q	2
*	step03.8556.8556.2	2.2117	0.1748	1543.48	1543.7675	6	262.4	54.2%	1	R.ILPMAGRDPECQR.T	2

U	gi\|10947137\|ref\|NP_00	2	2	3.9%	634	72444	7.5	ATP-binding cassette sub-family F member 2 isoform b [Homo sapiens]
U	gi\|27881506\|ref\|NP_00	2	2	4.0%	623	71290	7.4	ATP-binding cassette sub-family F member 2 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.6068.6068.2	2.2725	0.4016	1419.699	1420.5713	1	264.5	63.6%	1	R.LEELDADKAEMR.A	2
	step06.14255.14255.2	2.9916	0.4482	1440.983	1441.7264	1	1365.5	79.2%	1	R.ILHGLGFTPAMQR.K	2

gi|119703753|ref|NP_0

564

60067

8.0

keratin, type II cytoskeletal 6B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.9431.9434.2	3.7473	0.4272	1330.377	1330.5093	1	1293.9	81.8%	1	R.NLDLDSIIAEVK.A	2 2
	step03.7636.7636.2	3.505	0.1681	1180.382	1180.2925	1	1773.3	94.4%	2	K.YEELQITAGR.H	2 2

Similarities: gi|119395750|ref|NP_0(1:1)
gi|4557703|ref|NP_000(1:1)

gi|24307991|ref|NP_05

2517

281227

5.5

cullin-9 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.16576.16576.2	3.2812	0.3835	2338.881	2339.7148	1	757.9	52.6%	1	R.ETGALDLLMHMLCNPEPQIR.R	2
*	step03.16583.16583.3	3.6979	0.3765	2339.54	2339.7148	1	1309.8	39.5%	1	R.ETGALDLLMHMLCNPEPQIR.R	3
*	step06.16944.16944.3	4.7497	0.4066	3013.801	3013.4778	1	1100.6	31.0%	1	R.NGLLLLNLLLCNHHTLGDQIITQELR.D	3
*	step06.15578.15578.2	4.849	0.4077	1755.867	1756.0851	1	1048.6	80.8%	2	K.RLQQETQPFLLLLR.T	2
*	step02.12932.12932.2	2.6604	0.2263	3021.405	3020.107	1	566.9	24.2%	1	R.LCHLLVHVEPPPGPSPEPS#T#RPFS#K.N	2
*	step04.7601.7601.2	2.8485	0.392	1202.277	1202.3877	1	750.3	70.0%	2	R.VSAIHEVPPPR.S	2

U	gi\|22035565\|ref\|NP_05	2	3	3.8%	917	104804	5.7	GC-rich sequence DNA-binding factor 1 isoform 1 [Homo sapiens]
U	gi\|22035569\|ref\|NP_03	2	3	4.3%	815	93170	5.7	GC-rich sequence DNA-binding factor 1 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.14528.14529.2	2.4693	0.2138	2397.084	2398.3635	10	190.5	22.2%	1	R.LEGS#S#GGIGERY#KFLQEMR.G	2
	step04.17159.17159.2	4.6728	0.3795	1868.049	1868.1659	1	2657.6	83.3%	2	K.VPLINELESAIHQLYK.Q	2

gi|157738609|ref|NP_0

861

97113

5.6

E3 ubiquitin-protein ligase HECTD3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.7786.7786.2	2.4945	0.3657	1364.74	1365.5203	1	724.9	66.7%	2	R.VGAAGPAPGTGSGPLR.A	2
*	step02.16625.16625.2	2.8435	0.3155	1982.88	1982.3088	1	921.9	53.1%	1	K.VVPQAVLDLLTWQELEK.K	2

gi|19913369|ref|NP_00

808

89035

6.9

transducin beta-like protein 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14196.14196.2	3.1595	0.4122	1696.976	1696.885	1	1243.1	60.0%	2	K.SPGLYFLTAGDQGTLR.V	2
*	step06.13248.13248.2	3.4342	0.3954	1615.692	1615.8567	1	977.2	71.4%	2	K.LPVPAAAPTPWETHK.G	2

U	gi\|109809739\|ref\|NP_0	2	2	3.8%	582	66899	9.6	la-related protein 7 [Homo sapiens]
U	gi\|109809741\|ref\|NP_0	2	2	3.8%	582	66899	9.6	la-related protein 7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.12423.12423.2	2.8871	0.3118	2466.099	2466.6353	1	673.0	40.5%	1	R.DIEISTEEEKDTGDLKDSSLLK.T	2
	step02.12408.12408.3	3.747	0.4427	2467.408	2466.6353	1	978.9	38.1%	1	R.DIEISTEEEKDTGDLKDSSLLK.T	3

U	gi\|10190686\|ref\|NP_06	2	2	3.8%	521	60175	8.3	zinc finger protein 286A [Homo sapiens]
U	gi\|222831577\|ref\|NP_0	2	2	3.8%	522	59572	8.3	putative zinc finger protein 286B [Homo sapiens]
U	gi\|195927047\|ref\|NP_0	2	2	3.8%	521	60175	8.3	zinc finger protein 286A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step04.20234.20234.2	2.459	0.1423	2473.008	2471.6492	29	97.7	21.1%	1	K.GS#YAFHTLEKS#LKQKSNLMK.K	2
2	step04.20234.20234.2	2.459	0.1423	2473.008	2471.6492	29	97.7	21.1%	1	K.GSY#AFHTLEKS#LKQKSNLMK.K	2

U	gi\|4757810\|ref\|NP_004	2	3	3.8%	553	59751	9.1	ATP synthase subunit alpha, mitochondrial precursor [Homo sapiens]
U	gi\|50345984\|ref\|NP_00	2	3	3.8%	553	59751	9.1	ATP synthase subunit alpha, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.8338.8338.2	2.2764	0.3647	724.145	723.8866	1	672.3	91.7%	1	K.APGIIPR.I	2
	step06.13676.13676.2	3.4376	0.3519	1439.757	1439.6886	1	401.3	57.7%	2	K.GIRPAINVGLSVSR.V	2

gi|45827798|ref|NP_99

286

32595

6.1

serine/threonine-protein phosphatase PP1-alpha catalytic subunit isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.15244.15244.3	4.3437	0.3889	1441.152	1440.7135	1	1412.7	62.5%	2	K.IKYPENFFLLR.G	3 3
	step05.15218.15220.2	2.7986	0.3104	1441.73	1440.7135	1	702.4	80.0%	1	K.IKYPENFFLLR.G	2 2

Similarities: gi|4506003|ref|NP_002(2:0)

U	gi\|13027644\|ref\|NP_07	2	4	3.8%	240	24614	11.2	small nuclear ribonucleoprotein-associated protein N [Homo sapiens]
U	gi\|4507135\|ref\|NP_003	2	4	3.8%	240	24614	11.2	small nuclear ribonucleoprotein-associated protein N [Homo sapiens]
U	gi\|4507125\|ref\|NP_003	2	4	3.9%	231	23656	10.9	small nuclear ribonucleoprotein-associated proteins B and B' isoform B [Homo sapiens]
U	gi\|38150007\|ref\|NP_93	2	4	3.8%	240	24610	11.2	small nuclear ribonucleoprotein-associated proteins B and B' isoform B' [Homo sapiens]
U	gi\|13027650\|ref\|NP_07	2	4	3.8%	240	24614	11.2	small nuclear ribonucleoprotein-associated protein N [Homo sapiens]
U	gi\|13027648\|ref\|NP_07	2	4	3.8%	240	24614	11.2	small nuclear ribonucleoprotein-associated protein N [Homo sapiens]
U	gi\|13027646\|ref\|NP_07	2	4	3.8%	240	24614	11.2	small nuclear ribonucleoprotein-associated protein N [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.15034.15034.2	3.3536	0.3086	1039.113	1039.343	1	992.1	100.0%	2	K.RVLGLVLLR.G	2
	step03.14061.14061.2	3.1859	0.3915	883.431	883.1566	1	761.1	92.9%	2	R.VLGLVLLR.G	2

gi|124378039|ref|NP_0

2357

251891

5.8

protein transport protein Sec16A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.14453.14453.3	6.2644	0.4055	3440.547	3440.761	1	1360.4	31.5%	1	R.LSGSARPQELVGTFIQQEVGKPEDEASGSFFK.Q	3
*	step06.14377.14377.3	3.9957	0.6378	3187.188	3187.5518	1	471.7	27.3%	2	K.AGSALPGFANSPAGSTSVVLVPPAHGTLVPDGNK.A	3
*	step02.17597.17597.3	3.6432	0.3208	2365.545	2365.6938	1	935.1	40.0%	1	R.FANSLPINDPLQTVYQLMSGR.M	3

gi|57863301|ref|NP_05

1506

164886

8.2

CLIP-associating protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step03.14337.14337.2	2.9799	0.1476	2564.841	2563.9165	1	830.4	38.1%	1	K.S#YVAMVIVALIDRMGDAKDKVR.D	2
*2	step03.14337.14337.2	2.9799	0.1476	2564.841	2563.9165	1	830.4	38.1%	1	K.SY#VAMVIVALIDRMGDAKDKVR.D	2
*	step03.18311.18311.2	4.0208	0.5179	2392.042	2392.6511	1	1198.9	52.8%	1	R.SFEFLDLLLQEWQTHSLER.H	2
*	step04.14069.14069.2	2.5381	0.285	1743.793	1743.5862	11	155.9	30.8%	1	R.EASPSRLS#VARS#S#R.I	2

gi|19924129|ref|NP_00

1312

153892

6.9

DNA repair protein RAD50 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14106.14106.2	4.8656	0.406	1849.674	1850.0642	1	1358.7	76.7%	1	R.HSDELTSLLGYFPNKK.Q	2
*	step03.8328.8328.2	4.4404	0.3212	1621.719	1621.8197	1	1617.1	83.3%	2	K.LIQDQQEQIQHLK.S	2
*	step03.14292.14292.2	2.2746	0.1087	2276.018	2276.567	1	545.7	44.4%	1	K.KQKETELNKVIAQLSECEK.H	2

gi|38327039|ref|NP_00

840

94331

5.2

heat shock 70 kDa protein 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.6905.6905.2	3.4028	0.4522	1496.032	1496.5612	1	816.2	65.4%	1	R.AGGIETIANEYSDR.C	2
*	step04.14794.14794.2	4.5863	0.4549	1993.058	1992.307	1	710.3	53.1%	3	K.VREFSITDVVPYPISLR.W	2

gi|14149987|ref|NP_11

790

88207

6.5

WD repeat-containing protein 24 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.15066.15066.2	2.4352	0.0947	2010.916	2010.8221	13	338.6	26.7%	1	R.RKDS#VST#FSGQSES#VR.D	2
*	step03.19928.19928.2	2.3705	0.1246	1679.024	1678.6744	10	397.7	37.5%	1	K.EM*HCVQT#IAS#VAR.V	2

U	gi\|20127553\|ref\|NP_05	2	2	3.7%	755	85077	6.9	anaphase-promoting complex subunit 5 isoform a [Homo sapiens]
U	gi\|213385323\|ref\|NP_0	2	2	4.4%	643	72526	6.7	anaphase-promoting complex subunit 5 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.14406.14408.2	2.6949	0.205	2185.775	2185.3828	1	558.7	47.1%	1	K.FNPDFAEAHYLSYLNNLR.V	2
	step04.11573.11573.2	2.672	0.2446	1267.524	1267.4614	1	884.6	77.8%	1	R.IRDVVYFQAR.L	2

U	gi\|223890246\|ref\|NP_0	2	4	3.7%	712	82405	6.3	muskelin isoform 1 [Homo sapiens]
U	gi\|31881798\|ref\|NP_03	2	4	3.5%	735	84768	6.3	muskelin isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.12743.12743.2	3.7369	0.5146	1586.758	1586.8601	1	2158.6	76.9%	2	K.LERPAIVQNITFGK.Y	2
	step04.12228.12228.2	3.2985	0.3663	1500.46	1500.6826	1	1555.0	86.4%	2	R.FAHQLVYDELHK.V	2

gi|24797086|ref|NP_00

1115

125545

4.9

importin-5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13638.13638.3	4.264	0.3562	3305.416	3305.33	1	781.5	26.9%	1	K.RQDEDYDEQVEESLQDEDDNDVYILTK.V	3
*	step04.14555.14555.2	3.5654	0.3911	1496.649	1496.6891	1	984.8	75.0%	1	K.VSDILHSIFSSYK.E	2

gi|197927448|ref|NP_0

1151

125001

6.9

WD repeat-containing protein 6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.15942.15942.2	3.051	0.1717	1702.353	1702.8978	1	728.7	62.5%	1	K.ISWGQGHFWELWR.S	2
*	step05.13292.13292.2	2.6016	0.3402	1069.43	1069.2413	1	613.5	87.5%	2	K.VHSLSWALR.G	2
*	step04.12017.12017.2	3.777	0.3154	2081.687	2082.3389	1	463.0	52.8%	2	R.VLEEYSVPCAHAAHVTGLK.I	2

U	gi\|161169023\|ref\|NP_0	3	5	3.6%	1087	121000	5.1	transcription elongation factor SPT5 isoform a [Homo sapiens]
U	gi\|20149524\|ref\|NP_00	3	5	3.6%	1087	121000	5.1	transcription elongation factor SPT5 isoform a [Homo sapiens]
U	gi\|195546902\|ref\|NP_0	3	5	3.6%	1083	120499	5.1	transcription elongation factor SPT5 isoform b [Homo sapiens]
U	gi\|195546900\|ref\|NP_0	3	5	3.6%	1087	121000	5.1	transcription elongation factor SPT5 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.13660.13660.2	5.3216	0.4653	1814.716	1814.1167	1	2647.0	89.3%	2	R.KFIAYQFTDTPLQIK.S	2
step03.13860.13860.2	4.752	0.4513	1971.965	1972.2113	1	1296.0	63.3%	2	K.HEDLKDMLEFPAQELR.K	2
step05.12702.12702.2	2.251	0.292	1010.493	1010.1641	1	802.9	71.4%	1	R.SFAFLHCK.K	2

gi|170763479|ref|NP_0

1030

113289

6.4

MMS19 nucleotide excision repair protein homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15482.15482.2	3.2808	0.3706	1509.599	1509.7577	1	474.6	81.8%	2	R.HTVYNIITNFMR.T	2
*	step04.15234.15234.3	3.8135	0.3804	2514.448	2513.916	1	652.1	31.2%	1	R.VAALEASGTLAALYPVAFSSHLVPK.L	3

gi|122937229|ref|NP_0

869

96620

7.9

zinc finger protein 629 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.11705.11705.2	3.1112	0.3806	1489.315	1489.6182	1	650.1	70.8%	1	K.SFSVSSNLINHQR.I	2
*	step05.12968.12968.2	2.8085	0.1133	2282.607	2282.383	1	304.6	29.4%	1	R.HQRIHTGEKPYKCS#DCGK.S	2

gi|119964721|ref|NP_0

822

94638

7.1

tyrosine-protein kinase Fer [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18242.18242.2	2.5416	0.0933	1903.026	1903.105	18	185.4	26.7%	1	K.WILS#HEDVILGELLGK.G	2
*	step03.1192.1192.2	3.3146	0.1356	1675.428	1675.0055	1	802.5	61.5%	1	R.PKFSELQKELTIIK.R	2

gi|56699473|ref|NP_00

578

65816

7.4

zinc finger protein 192 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.9393.9393.2	2.6888	0.0936	1044.262	1044.0371	1	1001.5	76.2%	1	R.Y#QETLGPR.E	2
*	step04.12047.12047.2	2.5246	0.2592	1429.475	1428.6211	1	763.4	66.7%	1	K.AFSQSAGLILHQR.I	2

gi|7661690|ref|NP_056

531

59703

5.4

coiled-coil domain-containing protein 9 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13038.13040.2	2.2816	0.0946	1844.61	1845.7373	7	200.2	29.7%	1	R.GSPHLS#GAGDT#SISDRK.S	3 2
*	step03.6076.6076.2	2.2521	0.1368	2141.666	2140.9678	73	155.3	20.0%	1	R.GS#PHLS#GAGDTSISDRKS#K.E	2

U	gi\|134133226\|ref\|NP_0	3	12	3.5%	1075	121363	6.2	POTE ankyrin domain family member E [Homo sapiens]
U	gi\|153791352\|ref\|NP_0	3	12	3.5%	1075	121444	6.2	POTE ankyrin domain family member F [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.13756.13756.2	3.0851	0.3071	1199.462	1199.4302	2	621.9	75.0%	2	R.AVFPSIVGRPR.Q	2 2 2 2 2
step06.14184.14184.2	3.4169	0.447	1517.505	1516.6869	1	1223.6	85.0%	8	K.IWHHTFYNELR.V	2 2 2 2
step01.8051.8051.2	4.7689	0.504	1792.318	1791.94	1	1550.1	80.0%	2	K.SYELPDGQVITIGNER.F	2 2 2 2 2

U	gi\|289547701\|ref\|NP_1	2	2	3.5%	839	95770	9.2	zinc finger protein 347 isoform b [Homo sapiens]
U	gi\|289547705\|ref\|NP_0	2	2	3.5%	840	95842	9.2	zinc finger protein 347 isoform a [Homo sapiens]
U	gi\|289547703\|ref\|NP_0	2	2	3.5%	840	95842	9.2	zinc finger protein 347 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.20705.20705.2	2.2156	0.1592	1348.45	1348.4479	8	610.2	50.0%	1	-.M*ALTQGQVT#FR.D	2
	step05.12365.12365.2	2.3238	0.1342	2249.364	2249.4731	1	468.7	41.2%	1	R.HQRIHTGEKPYKYNEYGK.A	2

gi|118421085|ref|NP_6

1910

210855

8.8

treslin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.20538.20538.2	2.4406	0.1508	1615.244	1614.5498	1	497.1	33.3%	1	K.SPLLS#VPFLS#S#AR.R	2
*	step03.16211.16211.2	2.2028	0.143	2662.047	2662.9202	24	172.2	17.0%	1	K.S#LLFGAMS#EMISPSEKGSARM*KK.R	2
*	step04.20152.20152.2	2.4796	0.0977	1475.874	1475.5995	61	431.7	42.4%	1	K.KLFTS#PLCDVSK.K	2
*	step02.14835.14835.2	3.2197	0.1027	2057.293	2055.981	2	872.2	38.7%	1	R.SLSKPEPT#Y#VS#PPCPR.L	2

U	gi\|197304786\|ref\|NP_0	2	3	3.4%	1114	124477	8.4	IQ motif and SEC7 domain-containing protein 1 isoform a [Homo sapiens]
U	gi\|50582989\|ref\|NP_05	2	3	3.9%	963	108314	6.9	IQ motif and SEC7 domain-containing protein 1 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.17520.17520.2	3.8409	0.4771	2226.079	2227.3267	1	436.3	40.0%	1	K.SPAPSSDFADAITELEDAFSR.Q	2
	step06.15952.15952.2	3.5625	0.3606	1853.731	1854.1442	1	1086.9	75.0%	2	R.GFVPDTPVGVAHFLLQR.K	2

gi|221316723|ref|NP_0

1025

115704

8.3

N-acetyltransferase 10 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.13813.13813.2	3.019	0.1854	1280.342	1280.4935	1	932.7	77.8%	2	K.ARPSVLWCYK.K	2
	step03.9982.9982.2	3.1431	0.4038	1651.655	1651.8279	1	705.7	71.4%	2	R.IAVHPDYQGMGYGSR.A	2 2
	step06.14065.14065.2	2.3598	0.301	1178.434	1178.411	1	565.7	77.8%	2	K.RAGFVPVYLR.Q	2 2

Similarities: gi|221316741|ref|NP_0(2:1)

gi|188497648|ref|NP_0

979

110144

6.2

ubiquitin carboxyl-terminal hydrolase 37 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.12032.12032.2	2.7153	0.1945	2044.069	2044.0884	1	274.8	32.8%	2	K.ENKVS#LVVHY#NTGGIPR.I	3 3 2
*	step03.18342.18342.2	2.2408	0.0916	1916.206	1915.0928	36	359.8	31.1%	1	R.M*S#EEELLAAVLEISKR.D	2

gi|253683544|ref|NP_2

1035

109912

9.9

POM121-like protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.19724.19724.2	2.2185	0.0853	2493.707	2493.5435	141	74.6	18.4%	1	K.KS#QNS#PLGPLPSDWWESYLK.R	2
*	step06.13621.13621.2	2.3389	0.3589	1723.429	1724.6381	193	172.2	22.9%	1	K.ATSVVMSTTLAS#T#S#K.D	2

gi|119120877|ref|NP_5

923

106489

9.5

zinc finger protein 721 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12680.12680.2	3.3568	0.0882	2308.83	2309.4517	1	499.9	37.3%	1	K.HRRIHTGEKPYT#CEVCGK.A	2
*	step06.18661.18661.2	2.2452	0.14	1611.51	1610.8019	75	252.3	41.7%	1	K.VFKQSSHLNRHEK.I	2

U	gi\|310110798\|ref\|XP_0	2	6	3.4%	349	38532	5.4	PREDICTED: hypothetical protein LOC647020 [Homo sapiens]
U	gi\|310132008\|ref\|XP_0	2	6	3.4%	349	38532	5.4	PREDICTED: hypothetical protein LOC647020 [Homo sapiens]
U	gi\|310123342\|ref\|XP_0	2	6	3.4%	349	38532	5.4	PREDICTED: hypothetical protein LOC647020 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step03.11008.11008.2	3.3751	0.3117	1258.604	1257.5015	1	1351.6	90.0%	2	K.LKDISTLEPLK.K	2 2 2 2
2	step04.11835.11835.2	3.9325	0.2328	1386.57	1385.6744	1	1449.0	81.8%	4	K.LKDISTLEPLKK.L	2 2 2 2

Similarities: gi|5454088|ref|NP_006(2:0)
gi|5453880|ref|NP_006(2:0)
gi|21071028|ref|NP_03(2:0)

gi|9910280|ref|NP_064

1555

177189

5.6

UDP-glucose:glycoprotein glucosyltransferase 1 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17093.17093.2	4.0665	0.5454	1483.445	1483.8846	1	1815.6	88.5%	2	R.ILASPVELALVVMK.D	2
*	step02.17895.17895.3	4.6878	0.2331	2928.289	2927.297	1	617.9	32.3%	2	R.IIGPLEDSELFNQDDFHLLENIILK.T	3
*	step05.20849.20849.2	2.5305	0.0877	1595.376	1594.6459	4	599.0	44.4%	1	K.EKTKEPS#REGPQK.R	2

gi|77404397|ref|NP_05

910

101997

7.2

staphylococcal nuclease domain-containing protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.15057.15057.2	4.306	0.4742	1784.896	1785.102	1	971.1	76.9%	2	K.LRPLYDIPYMFEAR.E	2
*	step03.7768.7768.2	2.9302	0.252	1710.455	1710.8286	1	716.4	70.0%	2	R.NDIASHPPVEGSYAPR.R	2

gi|310112868|ref|XP_0

876

101055

9.9

PREDICTED: bcl-2-associated transcription factor 1-like, partial [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.9681.9681.2	3.4151	0.3867	1813.933	1813.069	1	587.7	59.4%	2	K.MAPVPLDDSNRPASLTK.D	2 2 2
step03.8277.8277.2	3.0213	0.3079	1828.355	1829.0684	1	442.2	59.4%	2	K.M*APVPLDDSNRPASLTK.D	2 2 2
step04.12478.12478.2	3.557	0.3494	1169.406	1168.4111	1	1258.1	85.0%	2	R.LLASTLVHSVK.K	2 2 2
step06.13938.13938.2	3.1445	0.2691	1296.821	1296.5841	1	946.5	77.3%	1	R.LLASTLVHSVKK.E	2 2 2

Similarities: gi|117938251|ref|NP_0(4:0)
gi|310133313|ref|XP_0(4:0)

gi|154744870|ref|NP_0

896

98900

8.1

zinc finger protein 574 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.9929.9929.2	4.6646	0.5722	1965.014	1965.1373	1	1478.1	71.9%	1	K.APPLSSSTIHYECVDCK.A	2
*	step06.13964.13966.2	3.1856	0.4703	1471.851	1471.7323	1	941.0	83.3%	1	R.LLEVHQLVVHAGR.Q	2

gi|221316711|ref|NP_6

852

96589

8.9

piwi-like protein 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11325.11325.2	2.6229	0.0818	1725.137	1723.8173	18	249.1	38.9%	1	K.QDFMDLS#ICTREK.L	2
*	step05.11868.11868.2	2.4139	0.1235	1839.884	1838.783	12	253.3	30.4%	2	K.VTELSS#ETQRGET#IK.M	2

gi|189409124|ref|NP_7

872

96405

6.2

armadillo repeat-containing protein 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.10230.10230.2	2.704	0.1743	1838.43	1837.1337	12	228.8	43.8%	1	R.NATMIFGILASNNDVKK.L	2
*	step03.242.242.2	2.2053	0.0995	1480.483	1479.6005	4	555.6	54.5%	1	R.AWNEVM*LQNDSR.K	2

U	gi\|13654270\|ref\|NP_11	2	2	3.3%	734	83065	4.7	protein LAS1 homolog isoform 1 [Homo sapiens]
U	gi\|282403493\|ref\|NP_0	2	2	3.6%	675	76845	4.7	protein LAS1 homolog isoform 3 [Homo sapiens]
U	gi\|282403491\|ref\|NP_0	2	2	3.3%	717	81243	4.7	protein LAS1 homolog isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.13579.13579.2	3.4379	0.3882	1614.485	1614.7872	1	1769.4	80.8%	1	R.GLHSQNFTQALLER.M	2
	step04.10170.10170.2	2.2199	0.1911	1208.092	1208.3109	7	403.1	66.7%	1	R.RFSAGQWEAR.R	2

gi|148746220|ref|NP_0

545

59545

8.9

spermatogenesis-associated serine-rich protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.5852.5852.2	2.365	0.1228	1997.535	1997.9717	1	206.0	27.9%	2	K.NKPKPAAEPS#NGIPDSS#K.S	2
*	step03.5428.5428.2	2.3002	0.0957	1998.705	1997.9717	63	109.8	22.1%	1	K.NKPKPAAEPS#NGIPDS#SK.S	2

gi|7661950|ref|NP_055

3.2%

1173

133502

6.8

RNA polymerase-associated protein CTR9 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11681.11681.2	4.0188	0.4596	1680.777	1680.8408	1	1291.3	67.9%	2	K.ILGSLYAASEDQEKR.D	2
*	step04.14730.14730.3	4.7468	0.4487	2584.379	2584.8713	1	1122.7	38.6%	2	K.EALQINQDHPDAWSLIGNLHLAK.Q	3
*	step04.14764.14764.2	4.0086	0.4914	2584.971	2584.8713	1	591.3	45.5%	2	K.EALQINQDHPDAWSLIGNLHLAK.Q	2

gi|46048234|ref|NP_06

3.1%

1167

131616

7.1

nucleolar protein 8 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.4868.4868.3	3.8937	0.1515	3019.682	3019.109	36	262.2	17.6%	1	K.T#GGVDFHMKAVPGT#EVPGHKNWVVS#K.F	3
*	step02.12100.12100.2	2.2198	0.0816	1408.572	1408.4594	38	404.2	38.9%	1	K.RKIIKY#DPS#K.Y	2

gi|62460637|ref|NP_07

3.1%

1081

118715

5.0

importin-4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14916.14916.3	4.961	0.6102	2552.369	2551.798	1	1796.0	40.9%	2	R.NAALFALGQFSENLQPHISSYSR.E	3
*	step04.17366.17366.2	3.609	0.3995	1227.57	1226.5786	1	1337.6	95.0%	4	K.LLGLLFPLLAR.E	2

gi|224177533|ref|NP_0

3.1%

577

66762

9.3

zinc finger protein 880 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.12433.12433.2	3.4709	0.1216	2265.888	2266.4922	1	887.9	55.9%	1	Q.HQRIHTGEKPYKCHECGK.L	2
*	step05.12044.12044.2	2.8523	0.1054	2345.958	2346.4722	1	523.4	41.2%	2	Q.HQRIHTGEKPY#KCHECGK.L	2

gi|126032348|ref|NP_0

4834

527234

6.3

E3 ubiquitin-protein ligase HERC2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15866.15866.3	6.6992	0.5402	2394.401	2394.7148	1	4121.6	48.9%	1	K.HEDLGHVALSLVHAGALGIEQVK.H	3
*	step04.14987.14987.2	4.2683	0.3448	2256.732	2255.616	1	790.8	50.0%	1	R.FLFNELRPAVCNDLSIMSK.F	2
*	step06.14503.14503.3	5.1659	0.4602	3304.449	3304.7417	1	1647.5	33.3%	1	K.FKELGIQPVPLQTITNENPSGPSLGTIPQAR.F	3
*	step06.14838.14838.2	2.5272	0.4961	992.518	992.24316	1	569.1	81.2%	2	K.IHGLILLGR.I	2
*	step03.13542.13542.2	2.3324	0.3093	1789.951	1790.0552	1	511.2	46.7%	1	K.VFVWGLNDKDQLGGLK.G	2
*	step04.16242.16242.3	4.6131	0.4927	2528.168	2527.898	1	890.9	34.8%	1	R.LGIGGTESVSTPTLLESIQHVFIK.K	3
*	step06.16303.16303.2	2.3266	0.1561	2656.703	2656.0708	10	191.7	27.1%	1	R.LGIGGTESVSTPTLLESIQHVFIKK.V	2
*	step05.15455.15455.3	4.639	0.3265	2446.774	2446.8962	1	634.2	38.8%	2	K.LPAQVPMEYNHLQEIPIIALR.N	3

gi|4885583|ref|NP_005

1354

158174

5.9

rho-associated protein kinase 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.11467.11467.2	2.7517	0.1172	1720.667	1719.787	1	403.1	44.4%	1	K.DEMEQKCRTS#NIK.L	2
*	step04.15062.15062.2	2.2488	0.2476	1819.644	1818.8634	1	515.4	43.6%	1	K.S#LQQRLEQEVNEHK.V	2
*	step02.20300.20300.2	2.2788	0.084	1760.775	1759.8911	3	493.4	46.2%	1	R.DMLLLACS#QDEQKK.W	2

gi|153791893|ref|NP_0

1171

130322

6.8

zinc finger BED domain-containing protein 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.4713.4713.2	2.2987	0.1475	1980.766	1981.1146	59	177.1	31.1%	1	K.SEVWHHFS#LAPM*DSLK.A	2
*	step03.11916.11916.2	2.5749	0.1574	2419.932	2420.6409	8	256.0	23.6%	1	K.VEM*LFEETMGIDT#MLRS#LK.E	2

gi|23510377|ref|NP_69

1194

129782

5.1

KN motif and ankyrin repeat domain-containing protein 1 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.5004.5004.2	2.6221	0.1299	2003.28	2001.9358	108	141.7	31.2%	1	R.S#IGCGDCSVDVT#VCSPK.E	2 2
	step06.12991.12991.2	3.0369	0.1548	2269.818	2270.315	61	148.8	23.3%	2	K.MRT#IACGPPQLT#VGLTAS#R.R	2 2

Similarities: gi|64464726|ref|NP_05(2:0)

gi|5803221|ref|NP_006

943

106099

6.6

WD repeat-containing protein 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.12508.12508.2	2.6298	0.3575	1480.436	1480.6497	1	393.1	58.3%	1	K.SFDLIHSPHGELK.A	2
*	step02.15005.15005.2	3.0424	0.4359	1713.239	1712.9943	1	834.7	57.1%	2	R.DVIGFNMAGLDYLKR.E	2

gi|61676188|ref|NP_11

4374

481896

5.2

E3 ubiquitin-protein ligase HUWE1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.18383.18383.2	3.873	0.4698	1660.8	1661.1089	1	923.6	84.6%	4	R.IPIPLMDYILNVMK.F	2
*	step02.18330.18330.3	4.3422	0.4424	3306.932	3307.8987	1	1074.5	28.2%	1	K.GLLPLVTILGLPNLPIDFPTSAACQAVAGVCK.S	3
*	step02.16736.16736.2	3.2386	0.4602	1173.826	1174.4573	1	1462.1	85.0%	2	R.ALAELFGLLVK.L	2
*	step06.16795.16795.2	4.0307	0.4861	1658.673	1659.0481	1	1571.9	76.9%	1	R.MAESMLAILCHILR.G	2
*	step03.13763.13763.2	2.2372	0.1399	1964.792	1964.1335	126	190.0	29.4%	1	K.AALGRALAMAES#TEKHAR.L	3 3 2
*	step04.11477.11477.2	2.2526	0.0809	1621.653	1621.8661	8	157.5	46.2%	1	R.EVLQNQLGIRPPTR.T	2
*	step05.14874.14874.2	3.9337	0.4413	1560.668	1560.7795	1	1338.3	82.1%	2	R.LFGHSSTSALSAILR.S	2
*	step03.13838.13838.2	3.2662	0.4676	1251.978	1251.5001	1	653.1	80.0%	1	R.HVLDTLIQLAK.V	2

gi|39725938|ref|NP_00

1390

155641

8.5

DNA-directed RNA polymerase III subunit RPC1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11609.11609.2	2.4527	0.1056	2048.565	2047.2761	129	80.5	28.9%	1	K.KIS#HICFGMKSPEEM*R.Q	2
*	step02.1995.1995.2	2.5109	0.1065	1552.401	1552.6039	78	279.1	34.1%	1	K.NELILTT#ES#IMK.K	2
*	step05.15485.15485.2	2.9999	0.1584	1545.561	1545.8468	1	1155.4	75.0%	2	K.MKESVLMLASFEK.T	2

gi|13324688|ref|NP_06

1224

136685

6.9

WD repeat-containing protein 11 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.16834.16834.2	3.9637	0.2639	1915.86	1915.3105	1	630.7	52.9%	1	K.FLLTGLLSGLPAPQFAIR.M	2
*	step04.14222.14222.2	3.3415	0.2645	1955.912	1956.1901	10	420.1	43.8%	2	K.NFPTITALEWSPSHNLK.S	2

gi|108773810|ref|NP_0

1176

134466

7.3

leucyl-tRNA synthetase, cytoplasmic [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11832.11832.2	2.6123	0.2881	2331.321	2330.4917	1	342.2	36.4%	1	K.EDKGTGVVTSVPSDSPDDIAALR.D	2
*	step04.11662.11662.2	2.3816	0.2523	1311.81	1310.4177	5	413.9	56.7%	1	K.EAPFPKT#QIAK.E	2

gi|45505155|ref|NP_11

1113

125957

6.2

F-box only protein 38 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.5590.5590.2	2.2742	0.1198	2093.062	2092.16	112	159.4	25.0%	1	K.T#PLRKRYNSHQMGQS#K.Q	2
*	step02.9293.9293.2	2.2173	0.1696	1742.556	1741.9639	19	328.4	40.0%	1	R.ACVVNGPDEVAKTKPR.H	2

U	gi\|209869993\|ref\|NP_0	2	3	2.9%	1010	107767	6.7	trifunctional purine biosynthetic protein adenosine-3 isoform 1 [Homo sapiens]
U	gi\|4503915\|ref\|NP_000	2	3	2.9%	1010	107767	6.7	trifunctional purine biosynthetic protein adenosine-3 isoform 1 [Homo sapiens]
U	gi\|209869995\|ref\|NP_0	2	3	2.9%	1010	107767	6.7	trifunctional purine biosynthetic protein adenosine-3 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.13587.13587.2	5.0353	0.38	1667.873	1666.9053	1	1904.0	83.3%	2	K.AFAHITGGGLLENIPR.V	2
	step06.15128.15130.2	3.6351	0.4348	1497.665	1497.83	1	999.6	79.2%	1	K.MLNIHPSLLPSFK.G	2

U	gi\|32528268\|ref\|NP_87	2	4	2.9%	922	103070	7.9	metabotropic glutamate receptor 7 isoform b precursor [Homo sapiens]
U	gi\|4504147\|ref\|NP_000	2	4	3.0%	915	102251	7.9	metabotropic glutamate receptor 7 isoform a precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.14000.14000.2	3.1282	0.0935	3042.213	3042.561	18	207.5	20.5%	2	K.LYIQTTTLTIS#MNLSASVALGMLYMPK.V	2
	step04.14235.14235.3	4.3535	0.1138	3043.594	3042.561	11	794.3	21.2%	2	K.LYIQTTTLTIS#MNLSASVALGMLYMPK.V	3

gi|82659109|ref|NP_06

2.8%

5183

573849

6.0

E3 ubiquitin-protein ligase UBR4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.14970.14970.2	2.5176	0.1176	1052.281	1051.3091	2	957.6	85.7%	1	R.LLLIWQHK.A	2
*	step02.16680.16680.3	4.5949	0.363	3250.752	3251.53	1	1621.0	39.8%	1	R.FYCVLSPEASEDDLNRLDSVACDVLFSK.L	3
*	step02.17285.17285.2	5.229	0.4811	2038.741	2038.3325	1	2767.3	79.4%	2	K.NLLPATLQLIDTYASFTR.A	2
*	step03.8553.8553.2	3.8799	0.4297	1454.749	1454.6106	1	778.9	75.0%	2	R.AQQALSELHTVEK.A	2
*	step06.14444.14446.2	3.7475	0.4663	1957.693	1958.2742	1	558.2	50.0%	1	R.SIAIMRPNNLVHFTESK.L	2
*	step02.5847.5847.3	5.1515	0.3238	2746.833	2746.8398	1	1474.1	34.3%	2	K.VNEAAPEKPQDDSGTAGGISSTSASVNR.Y	3
*	step04.14544.14546.3	6.2373	0.529	3024.881	3025.4407	1	713.4	35.0%	1	K.DVPVEALTTVKPYCNEIHAQAQLWLK.R	3
*	step04.13944.13944.2	2.4581	0.244	927.408	927.16797	1	586.7	92.9%	1	R.PALPFILR.L	2

gi|7706457|ref|NP_057

2.8%

1901

210511

5.4

A-kinase anchor protein 11 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.9464.9464.2	2.3298	0.1288	2229.402	2228.441	8	151.8	31.6%	1	R.KPESPYGNLCDAPDSPRPVK.A	2
*	step03.9822.9822.2	2.5961	0.2851	1904.912	1905.0518	1	478.7	53.1%	1	K.FPDSQNQLTHCSLSAAK.D	2
*	step02.17909.17909.2	5.0342	0.5551	1998.968	1999.3165	1	2115.4	71.9%	2	K.VGDLLQAVLQYYEVMEK.A	2

U	gi\|310110428\|ref\|XP_0	2	2	2.8%	1197	135796	8.1	PREDICTED: putative uncharacterized protein C12orf63 [Homo sapiens]
U	gi\|310129620\|ref\|XP_0	2	2	2.8%	1197	135796	8.1	PREDICTED: putative uncharacterized protein C12orf63 [Homo sapiens]
U	gi\|310122961\|ref\|XP_0	2	2	2.8%	1197	135786	8.0	PREDICTED: putative uncharacterized protein C12orf63 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.17804.17804.2	2.2486	0.0811	2355.461	2354.5854	29	237.0	24.6%	1	R.KLLSLFLAQT#QDVLQASNQR.S	2
	step04.11028.11028.2	2.4388	0.0876	1649.169	1648.5836	115	230.4	27.1%	1	K.DDGSS#FYNLT#KLK.D	2

U	gi\|149274621\|ref\|NP_0	2	3	2.8%	722	80074	8.3	centrosomal protein of 78 kDa isoform a [Homo sapiens]
U	gi\|149274651\|ref\|NP_1	2	3	2.8%	706	78317	8.3	centrosomal protein of 78 kDa isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.14733.14733.2	2.3887	0.1758	1462.398	1461.6371	6	242.8	46.7%	1	K.RHRGFPLIKT#R.D	2
	step05.15443.15443.2	2.5622	0.3997	1104.431	1104.3257	1	649.3	81.2%	2	K.FHAFLDLLK.D	2

gi|117956407|ref|NP_9

2.8%

644

74369

8.2

zinc finger protein 568 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.14164.14164.2	3.7351	0.1143	2222.849	2223.359	1	649.1	39.2%	19	R.HQRIHTGEKPYACT#VCGK.A	2

U	gi\|259906018\|ref\|NP_0	2	2	2.7%	1328	150583	6.4	apoptotic chromatin condensation inducer in the nucleus isoform 2 [Homo sapiens]
U	gi\|7662238\|ref\|NP_055	2	2	2.7%	1341	151887	6.4	apoptotic chromatin condensation inducer in the nucleus isoform 1 [Homo sapiens]
U	gi\|259906020\|ref\|NP_0	2	2	2.8%	1301	147388	6.7	apoptotic chromatin condensation inducer in the nucleus isoform 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.12302.12302.2	2.2295	0.1247	2075.364	2075.0286	2	326.6	31.4%	1	K.SSSISEEKGDS#DDEKPRK.G	2
	step02.17940.17940.2	2.2115	0.092	2195.748	2196.9978	2	444.6	27.1%	1	R.S#RSRSPDSSGS#RS#HSPLR.S	2

gi|4505939|ref|NP_000

1970

217204

7.4

DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.6137.6137.2	4.0463	0.4018	1663.563	1663.7736	1	1014.7	71.4%	1	K.AHNNELEPTPGNTLR.Q	2
*	step04.12311.12311.2	3.4521	0.3041	1777.1	1775.9423	1	784.5	64.3%	1	R.TLPHFIKDDYGPESR.G	2
*	step03.14902.14902.3	6.4757	0.5573	2566.592	2565.8215	1	2929.6	46.4%	2	R.TLQEDLVKDVLSNAHIQNELER.E	3

gi|194097398|ref|NP_0

1445

162003

6.4

receptor-type tyrosine-protein phosphatase gamma precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13190.13190.2	2.4646	0.1168	2494.774	2495.4531	17	135.7	25.0%	1	R.CT#ADMNITAEHS#NHPENKHK.N	2
*	step05.15036.15036.2	2.544	0.1144	2292.779	2292.417	18	273.8	25.0%	1	K.NRY#INILAYDHS#RVKLR.P	2

U	gi\|22035677\|ref\|NP_05	2	2	2.6%	1312	147809	5.1	AT-rich interactive domain-containing protein 4B isoform 1 [Homo sapiens]
U	gi\|22035679\|ref\|NP_11	2	2	2.8%	1226	137607	5.5	AT-rich interactive domain-containing protein 4B isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.14146.14146.2	2.3589	0.2972	2304.581	2305.253	3	154.4	20.0%	1	R.KDVHEIT#S#DT#APKPDAVLK.Q	2
	step03.10188.10188.2	2.6564	0.0844	1745.788	1745.5988	14	248.4	30.0%	1	R.VKDAQGGGS#S#S#KKQK.R	2

U	gi\|55953133\|ref\|NP_00	2	2	2.6%	1214	137515	6.1	immunoglobulin superfamily member 3 isoform 1 [Homo sapiens]
U	gi\|55953135\|ref\|NP_00	2	2	2.7%	1194	135196	6.1	immunoglobulin superfamily member 3 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.7698.7698.2	2.596	0.1232	2006.514	2005.1367	13	264.9	33.3%	1	K.LQVSKSKRT#LT#LVENK.P	2
	step06.12498.12498.2	2.5826	0.1015	1785.948	1786.0265	4	395.1	46.7%	1	R.LRLSQAQGNLSVLETR.Q	2

gi|24431975|ref|NP_05

1247

137223

8.2

hypothetical protein LOC26148 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.9624.9624.2	2.2682	0.1101	1823.465	1822.5887	118	129.2	24.6%	1	R.CLRS#QLSDS#S#SADR.C	2
*	step03.19538.19538.2	2.3906	0.0983	2279.651	2279.2603	2	223.0	24.7%	1	K.YAPS#S#LYPS#SLQAERLKK.H	3 2

U	gi\|38045896\|ref\|NP_82	2	2	2.6%	1088	124904	6.1	ELKS/Rab6-interacting/CAST family member 1 isoform delta [Homo sapiens]
U	gi\|38045898\|ref\|NP_82	2	2	2.5%	1116	128086	6.0	ELKS/Rab6-interacting/CAST family member 1 isoform epsilon [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.10116.10116.2	2.2971	0.1132	1296.384	1296.161	53	343.1	33.3%	1	-.MY#GS#ARS#VGK.V	2
	step02.12279.12279.2	2.3003	0.1437	2156.07	2155.0808	42	195.2	21.2%	1	K.EHAS#S#LAS#SGLKKDSRLK.T	2

gi|221316741|ref|NP_0

953

107271

7.0

N-acetyltransferase 10 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.9982.9982.2	3.1431	0.4038	1651.655	1651.8279	1	705.7	71.4%	2	R.IAVHPDYQGMGYGSR.A	2 2
	step06.14065.14065.2	2.3598	0.301	1178.434	1178.411	1	565.7	77.8%	2	K.RAGFVPVYLR.Q	2 2

Similarities: gi|221316723|ref|NP_0(2:0)

gi|54859722|ref|NP_05

2.5%

1436

162121

5.5

nuclear pore complex protein Nup160 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.14929.14929.2	2.9563	0.4646	1217.458	1217.4886	1	987.3	90.0%	2	R.NPIHAIGLLIR.E	2
*	step03.16780.16780.3	5.1169	0.409	2900.455	2900.2349	1	1152.5	36.5%	2	R.SQLQDLVEFPYVNLHNEVVGIIESR.A	3

gi|45827771|ref|NP_05

2.5%

1401

151661

5.9

enhancer of mRNA-decapping protein 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.14886.14886.2	3.1229	0.3513	1701.992	1702.0741	1	617.6	59.4%	1	R.GLLPGLLPAPADKLTPK.G	2
*	step03.5670.5672.2	2.3237	0.1069	2187.816	2189.194	105	89.4	23.5%	1	R.LCTQLEGLQS#T#VTGHVER.A	2

gi|34482047|ref|NP_00

2.5%

1082

119059

5.6

AP-3 complex subunit beta-2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.17774.17774.2	2.7706	0.1246	1438.904	1438.9536	2	636.8	70.8%	4	R.VPIIVPIMMLAIK.E	2 2
*	step05.10169.10169.2	2.2817	0.0876	1689.926	1688.8429	4	366.5	46.2%	1	K.EQGKLMGMNEIT#EK.L	2

Similarities: gi|32484979|ref|NP_00(1:1)

U	gi\|116063573\|ref\|NP_0	4	9	2.4%	2639	280016	6.0	filamin-A isoform 1 [Homo sapiens]
U	gi\|160420317\|ref\|NP_0	4	9	2.4%	2647	280737	6.1	filamin-A isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.9983.9983.2	3.3207	0.4111	1647.566	1647.8539	1	942.7	70.0%	2	K.TGVAVNKPAEFTVDAK.H	2
step06.14983.14983.2	4.4344	0.5723	1943.807	1944.206	1	1184.5	67.6%	3	K.HTAMVSWGGVSIPNSPFR.V	2
step05.12002.12002.2	3.5318	0.2566	1699.054	1699.932	1	565.6	56.7%	2	R.TGVELGKPTHFTVNAK.A	2
step04.11668.11668.2	3.6309	0.4052	1418.72	1418.6213	1	1199.8	83.3%	2	R.RLTVSSLQESGLK.V	2

gi|54607053|ref|NP_00

2671

292708

7.4

translational activator GCN1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17681.17681.2	3.4476	0.3646	2117.481	2117.4744	1	447.2	42.5%	2	K.GEPGAAPLSAPAFSLVFPFLK.M	2
*	step05.17093.17093.2	2.8056	0.1931	2652.82	2652.0408	1	939.6	43.2%	1	K.TFEQLHSTIGHQALEDILPFLLK.Q	2
*	step03.18732.18732.2	2.7692	0.4366	2028.668	2028.2764	1	453.6	41.2%	1	K.NIVSLLLSMLGHDEDNTR.I	2

gi|4759146|ref|NP_004

1529

169869

7.1

slit homolog 2 protein precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.16434.16434.2	4.4912	0.4427	1842.027	1842.1732	1	1586.3	73.3%	2	R.NHLQLFPELLFLGTAK.L	2
*	step06.14480.14480.2	5.4025	0.497	2299.452	2298.6375	1	1926.9	61.1%	1	R.AIQTMHLAQNPFICDCHLK.W	2

gi|24307969|ref|NP_05

1253

145182

6.9

cytoplasmic FMR1-interacting protein 1 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.12282.12282.2	2.2997	0.138	2080.624	2080.8691	65	162.7	22.5%	1	R.Y#S#NS#EVVTGSGRQEAQK.T	2
	step06.15089.15089.2	3.011	0.5085	1421.84	1421.7117	1	862.2	81.8%	2	K.YAPLHLVPLIER.L	2

gi|186972143|ref|NP_0

1249

138349

6.3

tripeptidyl-peptidase 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19597.19597.2	2.2788	0.1113	2129.964	2131.2078	1	225.8	35.0%	1	K.NGY#DFY#PKALKERIQK.E	2
*	step05.11354.11354.2	2.3731	0.1328	1583.6	1583.7777	19	398.1	44.4%	1	K.HALVNKM*Y#GRGLK.F	2

gi|26051235|ref|NP_06

1156

128979

5.1

nuclear pore complex protein Nup133 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.213.213.2	2.571	0.0916	1807.469	1806.8125	189	208.3	21.7%	1	-.M*FPAAPS#PRTPGT#GSR.R	2
*	step01.9958.9958.1	1.8898	0.0984	1389.649	1389.1798	29	125.5	32.0%	1	R.SS#LS#SRGT#PTR.M	1

U	gi\|15011902\|ref\|NP_11	2	2	2.3%	910	102546	8.0	synaptotagmin-like protein 2 isoform a [Homo sapiens]
U	gi\|244790020\|ref\|NP_0	2	2	2.2%	935	105058	8.0	synaptotagmin-like protein 2 isoform i [Homo sapiens]
U	gi\|244790013\|ref\|NP_0	2	2	2.2%	934	104930	8.0	synaptotagmin-like protein 2 isoform g [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.10637.10637.2	2.4137	0.1109	1502.561	1501.5618	1	386.3	45.0%	1	R.KMIY#KST#DLNK.D	2
	step03.11034.11034.1	1.9423	0.1957	1211.034	1211.2942	2	148.7	51.9%	1	K.SRQKT#RAVGK.T	1

gi|48762926|ref|NP_00

919

102452

6.1

periodic tryptophan protein 2 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14601.14601.2	4.4139	0.4365	2284.783	2285.642	1	1963.3	60.0%	1	R.LLDVLSGHEGPISGLCFNPMK.S	2
*	step04.14640.14640.3	5.2945	0.3564	2285.901	2285.642	1	2459.1	45.0%	1	R.LLDVLSGHEGPISGLCFNPMK.S	3

gi|22538495|ref|NP_07

598

67751

8.9

putative polypeptide N-acetylgalactosaminyltransferase-like protein 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.626.626.2	2.3804	0.1769	1541.614	1540.3416	3	425.3	36.0%	1	R.Y#NNT#VAY#GELR.N	2
*	step01.8850.8850.2	3.1397	0.0938	1815.976	1816.7408	1	782.4	51.9%	1	R.YNNT#VAY#GELRNNK.A	2

gi|14670392|ref|NP_11

2.2%

1483

170902

8.5

tyrosine-protein kinase BAZ1B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.20598.20598.2	2.6206	0.1254	1946.642	1945.9619	7	542.9	30.8%	1	R.WAS#MSEEQRKEY#LK.K	2
*	step01.10853.10853.2	2.9026	0.1016	2255.002	2254.18	7	245.1	30.9%	1	R.KLQS#EDS#AKTEEVDEEKK.M	2

gi|31982906|ref|NP_11

2.2%

1302

149079

5.7

cingulin-like protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14388.14388.2	2.4002	0.1757	2001.42	2001.8519	1	464.3	36.0%	1	R.ES#VEEAT#KNVEVLAS#R.S	2
*	step03.20452.20452.2	2.3568	0.0827	1520.476	1519.7491	1	395.8	63.6%	1	R.ELAEM*QRQLKEK.T	2

gi|33350932|ref|NP_00

2.1%

4646

532412

6.4

cytoplasmic dynein 1 heavy chain 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.18555.18555.3	3.8232	0.3504	2913.629	2914.2568	1	819.4	29.0%	2	R.VLTLSEDSPYETLHSFISNAVAPFFK.S	3
*	step05.20815.20815.2	3.431	0.435	2730.125	2730.153	1	658.6	41.3%	1	K.LVAEDIPLLFSLLSDVFPGVQYHR.G	2
*	step04.14349.14349.2	4.7243	0.5202	1925.227	1925.201	1	2093.2	76.7%	2	K.ALEHAFQLEHIMDLTR.L	2
*	step03.16254.16254.2	3.3213	0.3668	2123.724	2124.5117	1	752.6	50.0%	4	R.GIFEALRPLETLPVEGLIR.I	2
*	step05.15154.15154.2	2.8966	0.2192	1636.601	1636.9426	2	519.2	61.5%	2	K.NVHLAPGWLMQLEK.K	2
*	step05.14611.14611.2	3.0712	0.2064	1652.857	1652.942	1	823.6	73.1%	1	K.NVHLAPGWLM*QLEK.K	2

gi|30794488|ref|NP_06

2.1%

1401

160282

7.3

kinesin-like protein KIF27 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.10523.10523.2	2.4411	0.1098	1704.929	1705.0535	2	483.3	57.7%	1	R.ELTINIKM*KEDLIK.E	2
*	step05.16465.16465.1	2.3009	0.1272	1868.038	1866.7328	68	114.0	21.4%	1	K.T#GNDAKSVSKQY#S#LK.V	1

gi|32484979|ref|NP_00

2.1%

1094

121320

6.0

AP-3 complex subunit beta-1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.17774.17774.2	2.7706	0.1246	1438.904	1438.9536	2	636.8	70.8%	4	R.VPIIVPIMMLAIK.E	2 2
*	step06.14375.14375.2	3.374	0.546	1179.636	1179.3542	1	1329.5	88.9%	2	K.GLAAHYFFPR.Q	2

Similarities: gi|34482047|ref|NP_00(1:1)

U	gi\|282394030\|ref\|NP_5	2	4	2.1%	1070	115861	8.9	E3 ubiquitin-protein ligase MIB2 isoform 1 [Homo sapiens]
U	gi\|282394038\|ref\|NP_0	2	4	3.1%	753	82129	7.6	E3 ubiquitin-protein ligase MIB2 isoform 5 [Homo sapiens]
U	gi\|282394036\|ref\|NP_0	2	4	2.3%	1005	108889	8.8	E3 ubiquitin-protein ligase MIB2 isoform 4 [Homo sapiens]
U	gi\|282394034\|ref\|NP_0	2	4	2.2%	1056	114326	8.8	E3 ubiquitin-protein ligase MIB2 isoform 3 [Homo sapiens]
U	gi\|282394032\|ref\|NP_0	2	4	2.2%	1066	115415	8.9	E3 ubiquitin-protein ligase MIB2 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.15673.15673.3	5.8648	0.538	2325.754	2325.6526	1	2421.4	44.3%	2	R.HQLLPLVADGAGGDPGPLQLLSR.L	3
	step05.15641.15641.2	5.3485	0.484	2325.93	2325.6526	1	1423.4	70.5%	2	R.HQLLPLVADGAGGDPGPLQLLSR.L	2

gi|13654237|ref|NP_00

2.0%

4128

469093

7.1

DNA-dependent protein kinase catalytic subunit isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.17367.17367.3	6.5918	0.5661	2860.523	2859.2495	1	2008.2	44.8%	2	K.VYELLGLLGEVHPSEMINNAENLFR.A	3 3
	step02.17403.17403.2	2.3145	0.1588	2077.478	2076.3528	1	606.7	41.2%	1	R.GSCVTQVGLLESVYEMFR.K	2 2
	step03.20225.20225.3	4.9308	0.4012	3003.952	3004.383	1	1595.4	36.5%	2	K.SKLDQGGVIQDFINALDQLSNPELLFK.D	3 3
	step02.20654.20654.3	3.9094	0.1247	2790.467	2789.1326	1	681.0	28.1%	1	K.LDQGGVIQDFINALDQLSNPELLFK.D	3 3
*	step02.18099.18099.2	4.8329	0.5167	1629.963	1629.9216	1	1205.5	76.9%	2	R.LGLIEWLENTVTLK.D	2

Similarities: gi|113430845|ref|XP_0(4:1)

U	gi\|45446740\|ref\|NP_00	2	2	2.0%	2436	269945	6.8	ATP-binding cassette sub-family A member 2 isoform a [Homo sapiens]
U	gi\|47078218\|ref\|NP_99	2	2	1.9%	2466	273021	6.9	ATP-binding cassette sub-family A member 2 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.14752.14752.3	3.9034	0.2831	3512.573	3511.4407	138	397.4	15.8%	1	R.QHLEALSAGPGT#S#GSHLDRSTVSS#FSLDSVAR.N	3
	step06.18793.18793.2	2.2842	0.0811	1740.818	1740.8877	16	194.6	40.0%	1	K.CIASLM*STTAFGLGS#K.Y	2

U	gi\|208022632\|ref\|NP_0	2	2	2.0%	1870	215953	6.2	girdin isoform 1 [Homo sapiens]
U	gi\|50897852\|ref\|NP_06	2	2	2.0%	1843	212619	6.0	girdin isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.10612.10612.2	2.2479	0.1292	1295.351	1295.4509	84	176.8	48.1%	1	K.LIKS#KKDINR.E	2
	step02.13046.13046.3	3.5573	0.1187	3161.565	3161.189	15	514.9	17.7%	1	K.TGSPGSEVVT#LQQFLEESNKLT#S#VQIK.S	3

gi|130980075|ref|NP_0

2.0%

1338

153000

6.6

centromere protein J [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.12794.12794.2	2.2224	0.1893	2178.781	2180.1023	88	104.4	21.2%	1	R.ETMKESES#S#LDVS#LQKK.L	2
*	step04.20718.20718.2	2.3045	0.1432	1216.484	1217.391	4	478.6	66.7%	1	K.IIELETEIEK.F	2

gi|88953571|ref|XP_93

2.0%

1075

121282

6.2

PREDICTED: POTE ankyrin domain family member I isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.13756.13756.2	3.0851	0.3071	1199.462	1199.4302	2	621.9	75.0%	2	R.AVFPSIVGRPR.Q	2 2 2 2 2
	step06.14184.14184.2	3.4169	0.447	1517.505	1516.6869	1	1223.6	85.0%	8	K.IWHHTFYNELR.V	2 2 2 2

Similarities: gi|4501885|ref|NP_001(2:0)
gi|4501881|ref|NP_001(2:0)
gi|213688375|ref|NP_0(1:1)
gi|134133226|ref|NP_0(2:0)

U	gi\|310114187\|ref\|XP_0	2	2	1.9%	2101	233241	8.7	PREDICTED: ankyrin repeat domain-containing protein 36A [Homo sapiens]
U	gi\|310118966\|ref\|XP_0	2	2	2.0%	1941	218096	8.1	PREDICTED: ankyrin repeat domain-containing protein 36C isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.19162.19162.2	2.2029	0.1331	1959.576	1958.9298	147	159.7	25.0%	1	R.FLGSM*DSLTSSEESS#ER.P	2
	step06.16010.16010.2	2.3035	0.0983	2507.7	2508.4668	2	226.6	22.6%	1	K.QPAEKAT#S#DDKDSVSNIATEIK.E	2

gi|148612838|ref|NP_0

2103

228085

9.0

putative uncharacterized protein ENSP00000382813 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.14634.14634.2	2.2333	0.1014	3016.091	3016.184	6	144.7	20.7%	1	K.DHFDS#DDMKLSEIDFPM*ARS#KLLK.K	2
*	step02.13800.13800.2	2.6332	0.1244	1995.137	1994.7731	52	297.8	27.1%	1	K.QTDY#VDDS#T#KELSPR.K	2

gi|12667788|ref|NP_00

1960

226530

5.6

myosin-9 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17818.17818.3	3.5378	0.3505	3018.346	3019.2185	1	1048.6	28.8%	1	R.DLGEELEALKTELEDTLDSTAAQQELR.S	3
*	step05.13164.13164.2	2.3588	0.1133	1156.661	1156.3622	2	687.5	77.8%	1	R.RGDLPFVVPR.R	2

gi|157738645|ref|NP_0

1894

212454

6.9

plexin-A4 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step02.17982.17982.2	2.279	0.1873	2490.911	2491.527	29	138.4	18.9%	1	R.SS#QLYYFMTLTLS#DLKPS#R.G	2
*2	step02.17982.17982.2	2.279	0.1873	2490.911	2491.527	29	138.4	18.9%	1	R.S#SQLYYFMTLTLS#DLKPS#R.G	2
	step04.10262.10262.2	2.5976	0.1841	1992.658	1991.2787	61	250.2	29.2%	1	R.GSKMVS#EIYLTRLLATK.G	2

gi|27597090|ref|NP_00

1726

199071

4.9

transcription elongation factor SPT6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15624.15624.2	4.0055	0.4106	1669.526	1668.8782	1	1028.8	75.0%	2	R.NQHFEVPFIAFYR.K	2
*	step06.15166.15166.2	5.8358	0.5299	2215.408	2215.5332	1	1335.3	63.2%	1	R.AIAHPYSQALIQYVCGLGPR.K	2

gi|50959191|ref|NP_00

1597

176799

5.5

rho guanine nucleotide exchange factor 5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16448.16448.2	2.2222	0.2057	1969.345	1968.9401	4	270.1	28.1%	1	R.EPLRRT#T#PQQGASGPGR.S	2
*	step01.9629.9629.2	2.4341	0.0975	1587.634	1587.9329	17	557.3	54.2%	1	K.IFPLISQSRWLVK.S	2

U	gi\|12056971\|ref\|NP_07	3	3	1.8%	1944	216498	6.3	anaphase-promoting complex subunit 1 [Homo sapiens]
U	gi\|310118949\|ref\|XP_0	3	3	1.8%	1944	216264	6.3	PREDICTED: anaphase-promoting complex subunit 1-like [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.17436.17436.2	3.569	0.3335	2282.235	2282.7295	1	1217.9	58.3%	1	R.APDTMYLLDFVKPEFLLLR.T	2
step04.17406.17406.3	4.0665	0.3982	2282.774	2282.7295	1	1902.4	45.8%	1	R.APDTMYLLDFVKPEFLLLR.T	3
step02.5032.5032.2	2.2708	0.1791	2105.786	2105.2102	1	251.0	31.7%	1	R.Y#WELLIDLSKGT#QHLK.S	2

U	gi\|148491080\|ref\|NP_0	2	3	1.8%	1723	182814	7.0	trinucleotide repeat-containing gene 6B protein isoform 2 [Homo sapiens]
U	gi\|241982729\|ref\|NP_0	2	3	1.7%	1833	194001	6.8	trinucleotide repeat-containing gene 6B protein isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.10019.10019.2	3.1644	0.4824	1989.527	1990.1217	1	677.1	58.8%	2	K.GHPLPENQGNAQAPCWGR.S	2
	step01.6401.6401.2	2.9116	0.3961	1432.778	1432.6066	1	449.1	62.5%	1	R.VLSNTGWGQTQIK.Q	2

gi|110431348|ref|NP_0

1.8%

1447

158456

6.8

netrin receptor DCC precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.20228.20228.2	2.498	0.1247	1364.638	1363.541	7	546.7	59.1%	1	R.LESSSHYVISLK.A	2
*	step05.14969.14969.2	3.3666	0.3004	1792.767	1793.0597	1	489.9	53.8%	2	R.PPDLWIHHEEMEMK.N	2

U	gi\|164607124\|ref\|NP_0	2	2	1.8%	1328	149323	6.7	Fanconi anemia group I protein isoform 1 [Homo sapiens]
U	gi\|82830440\|ref\|NP_06	2	2	1.9%	1268	142569	6.8	Fanconi anemia group I protein isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.19359.19359.2	2.3211	0.0963	1347.529	1347.6066	2	782.8	72.7%	1	-.MDQKILSLAAEK.T	2
	step01.11661.11661.2	2.524	0.1757	1424.499	1424.278	1	636.8	52.3%	1	K.GSPCS#EEAGT#LR.R	2

gi|224589077|ref|NP_0

1.8%

1275

147763

6.6

hypothetical protein LOC285600 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.11363.11363.2	2.3095	0.1035	1148.158	1149.2335	76	422.5	62.5%	1	R.RNCETNLNK.H	2
*	step02.14385.14385.2	2.3093	0.2546	1839.597	1839.1049	8	329.4	42.3%	2	R.QIYHIM*QLNEEYLK.E	2

U	gi\|94721239\|ref\|NP_03	2	3	1.8%	1262	144498	6.1	isoleucyl-tRNA synthetase, cytoplasmic [Homo sapiens]
U	gi\|94721241\|ref\|NP_00	2	3	1.8%	1262	144498	6.1	isoleucyl-tRNA synthetase, cytoplasmic [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.15805.15805.2	2.9203	0.3091	1362.724	1362.5995	2	540.3	66.7%	2	K.YRPLFDYFLK.C	2
	step05.9258.9258.2	2.4811	0.2225	1399.729	1399.6165	2	444.3	58.3%	1	K.APLKPYPVSPSDK.V	2

gi|24308127|ref|NP_06

1.8%

793

91080

7.2

dnaJ homolog subfamily C member 10 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14562.14562.2	4.4597	0.5358	1619.741	1619.8705	1	1703.8	80.8%	1	R.SKESLVSFAMQHVR.S	2
*	step04.14297.14297.2	2.6816	0.2722	1404.617	1404.6199	1	501.3	63.6%	1	K.ESLVSFAMQHVR.S	2

U	gi\|113430845\|ref\|XP_0	4	6	1.7%	4096	465469	7.2	PREDICTED: DNA-dependent protein kinase catalytic subunit-like [Homo sapiens]
U	gi\|126032350\|ref\|NP_0	4	6	1.7%	4097	465505	7.2	DNA-dependent protein kinase catalytic subunit isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.17367.17367.3	6.5918	0.5661	2860.523	2859.2495	1	2008.2	44.8%	2	K.VYELLGLLGEVHPSEMINNAENLFR.A	3 3
step02.17403.17403.2	2.3145	0.1588	2077.478	2076.3528	1	606.7	41.2%	1	R.GSCVTQVGLLESVYEMFR.K	2 2
step03.20225.20225.3	4.9308	0.4012	3003.952	3004.383	1	1595.4	36.5%	2	K.SKLDQGGVIQDFINALDQLSNPELLFK.D	3 3
step02.20654.20654.3	3.9094	0.1247	2790.467	2789.1326	1	681.0	28.1%	1	K.LDQGGVIQDFINALDQLSNPELLFK.D	3 3

Similarities: gi|13654237|ref|NP_00(4:0)

gi|183583553|ref|NP_6

1.7%

2526

279929

7.4

collagen alpha-5(VI) chain [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13018.13018.2	2.7243	0.1704	1929.967	1930.1522	110	135.3	26.7%	1	K.T#FINKM*INSLPIEANK.Y	2
*	step02.14802.14802.3	3.5044	0.126	2925.148	2926.2551	138	632.8	20.7%	1	K.VIFVISAGETNSLDKDVLRNVS#LRAK.C	3

gi|149192855|ref|NP_0

1.7%

2229

242964

8.3

protein BAT2-like 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.8712.8712.3	4.2693	0.3885	2598.263	2598.8083	3	560.1	29.2%	1	K.SVSNLQKPTQSISQENTNSVPGGPK.S	3
*	step04.14174.14174.2	2.2161	0.1748	1360.729	1360.5785	19	141.4	54.5%	1	R.EERLAACAAKLK.Q	2

gi|138175817|ref|NP_0

1.7%

1845

203702

8.1

zinc finger protein 236 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.10383.10383.2	2.4835	0.085	1749.838	1748.9294	152	242.3	28.6%	1	K.CKLCGRGFVS#SGVLK.S	2
*	step01.9149.9149.2	2.2334	0.1438	2033.133	2032.2161	2	541.6	37.8%	1	R.LHT#GAKPFKCPHCELR.F	2

U	gi\|94966752\|ref\|NP_00	2	2	1.7%	1069	119887	5.8	elongation factor Tu GTP-binding domain-containing protein 1 isoform 2 [Homo sapiens]
U	gi\|94966754\|ref\|NP_07	2	2	1.6%	1120	125430	5.9	elongation factor Tu GTP-binding domain-containing protein 1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.9995.9995.2	2.9225	0.152	1842.493	1841.7007	1	278.8	33.9%	1	K.S#EDFQNSVWT#GPADK.A	2
	step02.11742.11744.2	2.7705	0.0956	2126.875	2128.0295	2	144.5	29.4%	1	K.S#EDFQNSVWTGPADKAS#K.E	2

gi|118498337|ref|NP_0

1.6%

2610

289383

5.4

E3 ubiquitin-protein ligase HECTD1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15007.15007.2	4.4399	0.5193	2315.804	2316.6409	1	2142.6	76.3%	2	R.LPLHLYDTPGSTYNLQILTR.R	2
*	step05.14996.14996.3	3.649	0.2925	2317.493	2316.6409	1	941.0	40.8%	1	R.LPLHLYDTPGSTYNLQILTR.R	3
*	step05.10985.10985.2	2.6858	0.3656	2215.335	2216.4	1	478.1	42.9%	2	R.SDVTHHAVTSQLPQVPAGAGSR.P	2

gi|149158690|ref|NP_5

1.6%

2157

228861

9.5

large proline-rich protein BAT2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.11768.11768.2	2.4351	0.1262	1729.708	1730.9893	2	360.2	53.1%	1	K.RPPAAPENTPLVPSGVK.S	2
*	step03.5652.5652.2	2.3192	0.2521	2009.562	2009.1154	1	229.5	41.2%	1	R.GGPPCKPPAPEDEDEAWR.Q	2

U	gi\|187937176\|ref\|NP_0	2	3	1.6%	1037	118303	6.6	NACHT, LRR and PYD domains-containing protein 7 isoform 3 [Homo sapiens]
U	gi\|8923473\|ref\|NP_060	2	3	1.6%	1062	120515	6.1	NACHT, LRR and PYD domains-containing protein 2 isoform 1 [Homo sapiens]
U	gi\|75709196\|ref\|NP_99	2	3	1.7%	980	111807	6.2	NACHT, LRR and PYD domains-containing protein 7 isoform 2 [Homo sapiens]
U	gi\|46049100\|ref\|NP_63	2	3	1.7%	1009	114845	6.5	NACHT, LRR and PYD domains-containing protein 7 isoform 1 [Homo sapiens]
U	gi\|291463280\|ref\|NP_0	2	3	1.6%	1039	117883	6.2	NACHT, LRR and PYD domains-containing protein 2 isoform 3 [Homo sapiens]
U	gi\|291463278\|ref\|NP_0	2	3	1.6%	1040	118138	5.9	NACHT, LRR and PYD domains-containing protein 2 isoform 2 [Homo sapiens]
U	gi\|291463275\|ref\|NP_0	2	3	1.6%	1062	120515	6.1	NACHT, LRR and PYD domains-containing protein 2 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.526.526.2	2.8364	0.156	1969.71	1970.2302	1	377.4	40.6%	2	R.AKELEATFGCRM*SPDIK.Q	2
	step01.11104.11104.2	2.2867	0.1285	1835.872	1834.9596	19	190.5	33.3%	1	K.ELEATFGCRMS#PDIK.Q	2

gi|169658378|ref|NP_0

1.5%

2968

314520

8.7

trinucleotide repeat-containing gene 18 protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13913.13913.2	2.4083	0.1081	2371.872	2371.4592	3	304.7	26.0%	1	K.LT#PSLLCS#MVAKNS#KAAGGPK.L	2
*	step02.13725.13725.2	3.4809	0.2116	2670.079	2668.8909	5	252.1	25.0%	1	R.LLPPDY#KIQCAEPSPALLVPS#AK.R	2

gi|24308089|ref|NP_05

1.5%

1954

223047

6.2

chromodomain-helicase-DNA-binding protein 5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.5832.5832.2	2.3799	0.1199	1897.611	1897.7227	27	190.8	38.3%	1	R.EES#DFDSAS#IHSASVR.S	2
	step02.19209.19209.2	2.3116	0.1145	1696.056	1695.8397	190	174.3	30.8%	1	R.AS#VEERITQVAKRK.M	2

U	gi\|302699237\|ref\|NP_8	2	3	1.5%	1600	175588	5.3	eukaryotic translation initiation factor 4 gamma 1 isoform 1 [Homo sapiens]
U	gi\|38201627\|ref\|NP_93	2	3	1.6%	1512	166588	5.2	eukaryotic translation initiation factor 4 gamma 1 isoform 2 [Homo sapiens]
U	gi\|38201625\|ref\|NP_93	2	3	1.7%	1435	158516	5.2	eukaryotic translation initiation factor 4 gamma 1 isoform 3 [Homo sapiens]
U	gi\|38201623\|ref\|NP_93	2	3	1.5%	1599	175460	5.3	eukaryotic translation initiation factor 4 gamma 1 isoform 5 [Homo sapiens]
U	gi\|302699247\|ref\|NP_0	2	3	1.5%	1606	176206	5.3	eukaryotic translation initiation factor 4 gamma 1 isoform 6 [Homo sapiens]
U	gi\|302699245\|ref\|NP_0	2	3	1.5%	1606	176206	5.3	eukaryotic translation initiation factor 4 gamma 1 isoform 6 [Homo sapiens]
U	gi\|302699239\|ref\|NP_0	2	3	1.7%	1404	154932	5.2	eukaryotic translation initiation factor 4 gamma 1 isoform 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.275.275.2	2.3256	0.1461	1908.326	1906.9982	4	441.3	30.8%	1	K.T#QDLFRRVRS#ILNK.L	2
	step04.7061.7061.2	2.5372	0.365	935.406	935.06226	1	322.5	72.2%	2	R.GGPPGPPISR.G	2

gi|118572613|ref|NP_0

1.4%

2752

299616

12.1

serine/arginine repetitive matrix protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.11665.11665.2	2.4164	0.2439	1374.325	1373.1803	10	296.7	44.0%	1	R.S#GS#SQPKAKS#R.T	2
*	step03.8296.8296.2	2.8596	0.2839	1380.522	1379.5469	1	636.5	69.2%	2	R.TPQAPASANLVGPR.S	2
*	step01.14742.14742.2	2.2687	0.2412	1483.384	1482.5822	8	313.0	41.0%	1	R.M*APALS#GANLTSPR.V	2

gi|238624188|ref|NP_5

1.4%

1393

151168

5.2

diffuse panbronchiolitis critical region 1 protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.5928.5928.2	2.3455	0.1634	680.741	680.81537	3	558.6	90.0%	1	R.PPELPK.S	2
*	step03.18802.18802.2	2.5904	0.1153	1741.669	1741.796	4	388.5	46.2%	1	K.M*TQVT#EKSTEHPEK.T	2

gi|133778961|ref|NP_1

1.3%

2789

315336

6.2

testis-expressed sequence 15 protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13701.13701.2	2.5626	0.0875	2148.833	2147.9954	118	192.2	21.2%	1	K.DSQS#DLTLHSEIAY#IS#K.P	2
*	step04.14295.14295.2	2.2577	0.1407	2322.17	2321.3384	57	280.5	21.2%	1	K.IVPS#S#CDSLKRNHLT#PKK.V	2

gi|44771211|ref|NP_05

1.3%

2210

242599

6.0

mediator of RNA polymerase II transcription subunit 13-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.12256.12256.2	2.5925	0.2191	1856.017	1854.951	5	252.2	33.3%	1	K.M*EVEDGLGS#PKPEEIK.D	2
*	step03.17147.17147.2	2.9195	0.1129	1752.982	1752.5817	1	401.6	36.4%	1	R.QT#LPCVS#WS#YDR.V	2

U	gi\|14211540\|ref\|NP_06	2	3	1.3%	1003	113671	8.8	putative helicase MOV-10 [Homo sapiens]
U	gi\|194272168\|ref\|NP_0	2	3	1.3%	1003	113671	8.8	putative helicase MOV-10 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.18419.18419.2	2.631	0.2817	1626.984	1627.0342	1	710.5	66.7%	1	R.WLLWPMLFPVAPR.D	2
	step05.17558.17558.2	4.1876	0.438	1642.939	1643.0336	1	710.4	70.8%	2	R.WLLWPM*LFPVAPR.D	2

gi|110347463|ref|NP_0

1.2%

2446

269051

7.0

transcription factor HIVEP2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19446.19446.2	2.3536	0.1405	2020.604	2020.0237	8	223.8	26.7%	1	K.FNS#ES#RQPQIIPSSIR.N	2
*	step02.15630.15630.2	2.2884	0.1545	2032.699	2031.961	120	137.8	21.5%	1	R.VGY#DY#DVCRKPY#KK.W	2

gi|119372317|ref|NP_6

3549

402118

6.3

xin actin-binding repeat-containing protein 2 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.16654.16654.2	2.2313	0.0985	2565.583	2566.4932	94	163.7	19.0%	1	R.S#EQEAIHS#SQVGTSRSSQEMAR.N	2
*	step02.15880.15880.2	2.6793	0.2129	2043.219	2043.0189	170	131.3	23.4%	1	R.ANT#SPS#PPRSRSEQLVR.L	2

gi|118402590|ref|NP_0

3530

395294

9.2

myosin-XV [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.1798.1798.2	2.2141	0.1266	1605.137	1604.7367	37	190.3	28.6%	1	R.LRGS#QKARAGGPAVR.E	2
*	step04.19846.19846.2	2.2825	0.135	1512.704	1512.7583	22	316.3	45.8%	1	K.RFGYKLAGMDPEK.P	2
*	step05.8106.8106.2	2.3766	0.2284	1086.123	1087.2599	2	402.0	83.3%	1	R.RPPAPQPAPR.T	2

gi|150170718|ref|NP_0

2723

304815

7.4

zinc finger protein 292 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.581.581.2	2.2026	0.1504	1721.604	1720.6498	1	429.7	41.7%	1	K.Y#DEENLPIPNS#LR.C	2
*	step02.14097.14098.2	2.7844	0.117	1933.788	1932.9412	99	208.6	25.0%	1	K.VEKAEPASAAELS#S#VRK.E	2

U	gi\|105990514\|ref\|NP_0	2	2	1.1%	2602	278162	5.7	filamin-B isoform 2 [Homo sapiens]
U	gi\|256222415\|ref\|NP_0	2	2	1.1%	2578	275666	5.8	filamin-B isoform 4 [Homo sapiens]
U	gi\|256222413\|ref\|NP_0	2	2	1.1%	2591	276936	5.7	filamin-B isoform 3 [Homo sapiens]
U	gi\|256222411\|ref\|NP_0	2	2	1.1%	2633	281633	5.7	filamin-B isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.7362.7364.2	2.4982	0.0898	1338.682	1337.2964	25	340.2	44.4%	1	R.VKESITRT#S#R.A	2
	step03.10036.10036.2	2.9058	0.2749	1986.536	1986.1532	2	263.2	41.7%	1	K.IPEINSSDMSAHVTSPSGR.V	2

gi|21493024|ref|NP_65

1684

181688

4.4

A-kinase anchor protein 12 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.20614.20614.2	2.2669	0.1263	1370.401	1370.5381	1	666.3	51.5%	1	-.MLGTIT#ITVGQR.D	2
*	step02.13083.13083.2	2.8408	0.0923	2211.186	2211.268	119	293.1	22.2%	1	-.MLGTIT#IT#VGQRDSEDVSK.R	2

U	gi\|197209826\|ref\|NP_1	2	2	1.0%	3258	363391	6.9	protein unc-80 homolog isoform 1 [Homo sapiens]
U	gi\|256818778\|ref\|NP_8	2	2	1.1%	3234	360874	6.9	protein unc-80 homolog isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.12041.12041.2	3.0143	0.1377	1922.04	1921.7968	166	139.3	26.2%	1	K.ECSDKS#CLRT#PS#LK.K	2
	step01.8019.8019.2	2.292	0.0892	2185.314	2185.5068	3	210.9	26.3%	1	R.EGM*LLNLLIPFVLT#VGSGSK.D	2

U	gi\|256017159\|ref\|NP_0	2	2	1.0%	2856	315218	6.8	MAX gene-associated protein isoform 2 [Homo sapiens]
U	gi\|256017163\|ref\|NP_0	2	2	0.9%	3065	336160	6.9	MAX gene-associated protein isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.12522.12522.2	2.3708	0.0827	1529.975	1529.6323	90	143.4	44.4%	1	K.LNSVDPT#M*SIDLK.Y	2
	step01.10115.10115.2	2.2777	0.1036	1792.322	1792.8405	183	178.4	21.7%	1	R.ADVS#LT#TLLTAQASLK.T	2

U	gi\|239748171\|ref\|XP_9	2	2	1.0%	1615	176725	6.2	PREDICTED: roundabout homolog 1-like isoform 2 [Homo sapiens]
U	gi\|4506569\|ref\|NP_002	2	2	1.0%	1651	180928	6.0	roundabout homolog 1 isoform a precursor [Homo sapiens]
U	gi\|294345407\|ref\|NP_5	2	2	1.0%	1606	175835	6.1	roundabout homolog 1 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.8784.8786.2	2.5876	0.0961	1537.186	1536.7782	15	509.5	58.3%	1	K.INEMKTFNSPNLK.D	2
	step06.18871.18871.2	2.9577	0.0968	1945.76	1945.0839	11	431.1	35.6%	1	K.INEMKT#FNSPNLKDGR.F	2

gi|91718902|ref|NP_73

4911

541376

6.5

histone-lysine N-methyltransferase MLL3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14754.14754.2	2.5393	0.1828	2687.265	2687.6294	51	191.7	19.0%	1	K.IINQNSVAVLQT#PPDIQS#EHS#R.D	2
*	step03.15000.15000.2	2.2167	0.1586	2453.998	2454.5503	1	258.6	23.9%	1	K.AS#PPAS#PPIAFPPAFEAAQVEAK.P	2

gi|4507691|ref|NP_003

3830

434416

8.2

transformation/transcription domain-associated protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.8266.8266.2	2.2044	0.0955	1219.406	1218.3485	86	464.9	44.4%	1	K.FGGS#NRKMLK.E	2
*	step06.14594.14594.3	3.6029	0.2494	2757.274	2757.1414	2	579.9	25.8%	1	K.TERAMLIEAGSPFREPLIKFLT#R.H	3

gi|56550039|ref|NP_00

3969

431768

9.1

histone-lysine N-methyltransferase MLL [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.13760.13760.2	2.4355	0.185	1589.519	1588.6875	57	179.3	27.3%	1	K.KANS#MVKS#FFIR.Q	2
*	step04.16896.16896.2	2.5063	0.082	2542.312	2541.3533	4	350.2	20.0%	1	K.ALSSAVQAS#PT#S#PGGSPSSPSSGQR.S	2

gi|110611228|ref|NP_0

3433

394467

5.3

utrophin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.4775.4775.2	2.2365	0.104	1979.824	1980.1925	49	300.3	31.1%	1	K.DLLET#VRVREQAITKK.S	2
*	step05.20717.20717.2	2.3915	0.1906	1551.066	1550.5931	17	505.6	46.2%	1	K.SASIRAHLEAS#AEK.W	2

gi|79749430|ref|NP_99